Towards Adaptive Decision Support: A Perspective from Intelligent and Annotated Visual Analytics for Exploring Big Urban Mobility Data
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Xu, Haowen↗
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ELSI — An open infrastructure for electronic structure solvers
Routine applications of electronic structure theory to molecules and periodic systems need to compute the electron density from given Hamiltonian and, in case of non-orthogonal basis sets, overlap matrices. System sizes can range from few to thousands or, in some examples, millions of atoms. Different discretization schemes (basis sets) and different system geometries (finite non-periodic vs. infinite periodic boundary conditions) yield matrices with different structures. The ELectronic Structure Infrastructure (ELSI) project provides an open-source software interface to facilitate the implementation and optimal use of high-performance solver libraries covering cubic scaling eigensolvers, linear scaling density-matrix-based algorithms, and other reduced scaling methods in between. In this paper, we present recent improvements and developments inside ELSI, mainly covering (1) new solvers connected to the interface, (2) matrix layout and communication adapted for parallel calculations of periodic and/or spin-polarized systems, (3) routines for density matrix extrapolation in geometry optimization and molecular dynamics calculations, and (4) general utilities such as parallel matrix I/O and JSON output. The ELSI interface has been integrated into four electronic structure code projects (DFTB+, DGDFT, FHI-aims, SIESTA), allowing us to rigorously benchmark the performance of the solvers on an equal footing. Based on results of a systematic set of large-scale benchmarks performed with Kohn–Sham density-functional theory and density-functional tight-binding theory, we identify factors that strongly affect the efficiency of the solvers, and propose a decision layer that assists with the solver selection process. As a result, we describe a reverse communication interface encoding matrix-free iterative solver strategies that are amenable, e.g., for use with planewave basis sets.
97 MATHEMATICS AND COMPUTING↗
Tunable surface acoustic wave device using semiconducting MgZnO and piezoelectric NiZnO dual-layer structure on glass
Tunable surface acoustic wave (SAW) devices have attracted considerable interests due to its applications in emerging fields, such as secured wireless communication, adaptive signal processing, and smart sensing systems. We report a dual-input-voltage-controlled tunable SAW built on glass, which uses a ZnO-based dual-layer structure consisting of a piezoelectric Ni- doped ZnO (NZO) and semiconducting Mg-doped ZnO (MZO). The interdigital (IDT) electrodes are buried in the piezoelectric NZO layer to form the delay line for SAW propagation, while the semiconductor MZO layer serves as the channel of a thin film transistor (TFT) to modulate the conductivity. Results show the interface between MZO channel and SiO 2 gate dielectric layer of the TFTT significantly impacts on SAW tuning performances due to Zn diffusion from MZO into SiO 2 . The TFT-SAW device using an ultra-thin MgO layer as interface modification enables SAW frequency tuning of 0.53% under solely V gs control with 0–12 V. The required voltage range is significantly reduced compared regular MZO-NZO TFT-SAW counterpart (Δf/f c ~ 0.25%; V gs –30 to –14 V) without interface modification. With additional control of V ds , the SAW frequency tunability is further expanded from 0.46% to 0.63%. As a result, this dual-input voltage-controlled frequency tuning device on glass is promising for low-voltage, low-cost portable smart sensors and voltage-controlled reconfigurable radio-frequency identification tags.
36 MATERIALS SCIENCE↗
A Risk Assessment Framework for Cyber-Physical Security in Distribution Grids with Grid-Edge DERs
Integration of inverter-based distributed energy resources (DERs) is reshaping the landscape of distribution grids to fulfill the socioeconomic, environmental, and sustainability goals. Addressing the technological challenges of DER grid integration requires an adaptive communication layer for efficient DER management and control. This transition has given rise to a cyberphysical system (CPS) architecture within the distribution system, causing new vulnerabilities for cyberphysical attacks. To better address potential threats, this paper presents a comprehensive risk assessment framework for cyberphysical security in distribution grids with grid-edge DERs. The framework incorporates a detailed CPS model accounting for dynamic DER characteristics within the distribution grid. It identifies vulnerabilities in DER communication systems, models attack scenarios, and addresses communication latency crucial for inverter control timescales. Subsequently, the quantification of attack impacts employs an attack probability model including both the vulnerability and criticality of cyber components. The proposed risk assessment framework was validated through testing on the modified IEEE 13-node and 123-node test feeders.
cyberattack↗
Engineering Terpene Production Pathways in Methylobacterium extorquens AM1
Terpenes are diverse specialized metabolites naturally found within plants and have important roles in inter-species communication, adaptation and interaction with the environment. Their industrial applications span a broad range, including fragrances, flavors, cosmetics, natural colorants to agrochemicals and therapeutics, yet formal chemical synthesis is economically challenging due to structural complexities. Engineering terpene biosynthesis could represent an alternative in microbial biotechnological workhorses, such as Saccharomyces cerevisiae or Escherichi coli, utilizing sugars or complex media as feedstocks. Host species that metabolize renewable and affordable carbon sources may offer unique sustainable biotechnological alternatives. Methylotrophs are bacteria with the capacity to utilize one-carbon feedstocks, such as methanol or formate. They colonize the phyllosphere (above-ground area) of plants, and many accumulate abundant carotenoid pigments. Methylotrophs have the capacity to take up and use a subset of the rare earth elements known as lanthanides. These metals can enhance one-carbon (methylotrophic) metabolism. Here, we investigated whether manipulating the metabolism enables and enhances terpene production. A carotenoid-deficient mutant potentially liberates carbon, which may contribute to bioproduct accumulation. To test this hypothesis, terpene-producing bacterial strains regulated by two distinct promoters were generated. Wildtype Methylobacterium extorquens, ∆Meta1_3665, a methylotrophic mutant lacking the carotenoid pathway, and an E. coli strain were transformed with an exogenous terpene pathway and grown both in the presence and absence of lanthanides. The extraction, and the comparison of analytical profiles, provided evidence that engineered cultured M. extorquens under control of a native, inducible methylotrophic promoter can yield the sesquiterpene patchoulol when supplemented with lanthanide. In contrast, using a moderate-strength constitutive promoter failed to give production. We demonstrated colonization of the phyllosphere with the engineered strains, supporting the future engineering of selected species of the plant microbiome and with promising implications for the synthetic biology of small molecules.
59 BASIC BIOLOGICAL SCIENCES↗
Exascale Multiphysics Nuclear Reactor Simulations for Advanced Designs
ENRICO is a coupled application developed under the U.S. Department of Energy's Exascale Computing Project (ECP) targeting the modeling of advanced nuclear reactors. It couples radiation transport with heat and fluid simulation, including the high-fidelity, highresolution Monte-Carlo code Shift and the Computational fluid dynamics code NekRS. NekRS is a highly-performant open-source code for simulation of incompressible and low-Mach fluid flow, heat transfer, and combustion with a particular focus on turbulent flows in complex domains. It is based on rapidly convergent high-order spectral element discretizations that feature minimal numerical dissipation and dispersion. State-of-the-art multilevel preconditioners, efficient high-order time-splitting methods, and runtime-adaptive communication strategies are built on a fast OCCA-based kernel library, libParanumal, to provide scalability and portability across the spectrum of current and future high-performance computing platforms. On Frontier, Nek5000/RS has recently achieved an unprecedented milestone in breaching over 1 billion spectral elements and 350 billion degrees of freedom. Shift has demonstrated the capability to transport upwards of 1 billion particles per second in full core nuclear reactor simulations featuring complete temperature-dependent, continuous-energy physics on Frontier. Shift achieved a weak-scaling efficiency of 97.8% on 8192 nodes of Frontier and calculated 6 reactions in 214,896 fuel pin regions below 1% statistical error yielding first-of-a-kind resolution for a Monte Carlo transport application.
Hamilton, Steven P.↗
SBIR Phase II Final Report - A Robust Wireless Communication System for Harsh Environments Including Nuclear Facilities
This is the Final Report for the DOE Phase II SBIR project “A Robust Wireless Communication System for Harsh Environments Including Nuclear Facilities.” The topics covered herein include technical progress made, progress against the planned milestones and deliverables, project outcomes, and a discussion on future expectations of deployment and impacts of the results of this work. In brief, all planned work for the project was successfully completed, on or ahead of schedule and on budget. The major accomplishment was the successful development of new sensor/communications systems with wideband (WB)/ultra-wideband (UWB) communications based on the software-defined-radio (SDR) technology to improve sensing and control in nuclear power plants and then a broad range of similar sensing applications. The impacts of these disciplines/focuses of this SBIR include: A new multi-frequency SDR-based architecture with WB/UWB communications integrated with sensors was developed, utilizing 310 MHz, 450 MHz, 915 MHz, and 5 GHz frequencies; Secure communications using Advanced Encryption Standard (AES) algorithm; Sensing possibilities not effectively addressed by previous technologies was addressed; and, The newly developed wireless sensor communications system can adapt its communications parameters to its operational environment for optimal performance. The performance of this system has been evaluated by systematic laboratory and field testing. The field testing was conducted at Massachusetts Institute of Technology (MIT)’s Nuclear Test Reactor, and the McClellan Nuclear center at the University of California Davis (UC Davis), as well as at Oak Ridge National Laboratory (ORNL). The success in this project resulted in DSI being awarded “The DOE’s 2018 SBIR/STTR Small Business of the Year”. This technology has attracted interest from The Rolls Royce company with ongoing discussions under NDA for potential strategic partnership between DSI and Rolls Royce in providing wireless sensor communications in nuclear facilities. Furthermore, the success of this project has attracted significant interest from the United Nations International Atomic Agency (IAEA) in Vienna, Austria, as well as other DOE and DOD offices. Currently, per request from IAEA, DOE’s office of International Safeguards has funded DSI to develop a WB/UWB wireless communication system for real-time transmission of images from IAEA’s safeguards cameras in various nuclear facilities. DSI also has received a Phase II and Phase II.5 SBIR awards from ARMY and NAVY for wireless communications capability for various DOD aircraft.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Predicting cross-barrier communication disruption using adaptive Support Vector Machines.
Abstract not provided.
McCormick, Cameron↗
Reducing Communication Overhead in Federated Learning for Network Anomaly Detection with Adaptive Client Selection
Communication overhead in federated learning (FL) poses a significant challenge for network anomaly detection systems, where the myriad of client configurations and network conditions can severely impact system efficiency and detection accuracy. While existing approaches attempt to address this through individual optimization techniques, they often fail to maintain the delicate balance between reduced overhead and detection performance. This paper presents an adaptive FL framework that dynamically combines batch size optimization, client selection, and asynchronous updates to achieve efficient anomaly detection. Through extensive profiling and experimental analysis on two distinct datasets-UNSW-NBIS for general network traffic and ROAD for automotive networks-our framework reduces communication overhead by 97.6%; (from 700.0s to 16.8s) compared to synchronous baseline approaches while maintaining comparable detection accuracy (95.10%; vs. 95.12%;). Statistical validation using Mann-Whitney U test confirms significant improvements (p < 0.05) over existing FL approaches across both datasets, demonstrating the framework's adaptability to different network security contexts. Detailed profiling analysis reveals the efficiency gains through dramatic reductions in GPU operations and memory transfers while maintaining robust detection performance under varying client conditions.
Marfo, William [University of Texas at El Paso]↗
System and method for compact adaptive free space optical communications
The present disclosure relates to a free-space optical communications system that may make use of a controller and a digital micro mirror (DMM) assembly in communication with the controller. The DMM may have a plurality of independently controllable micromirror elements forming both an emitter and a receiver. A laser is included which is configured to generate an optical beam which may be applied to select ones of the first subpluralities of micromirror elements to generate a transmitted free space optical signal along a selected vector. A detector is included for receiving an incoming free space optical signal imaged by at least one of the micromirror elements.
42 ENGINEERING↗
Syncytia in Fungi
Filamentous fungi typically grow as interconnected multinucleate syncytia that can be microscopic to many hectares in size. Mechanistic details and rules that govern the formation and function of these multinucleate syncytia are largely unexplored, including details on syncytial morphology and the regulatory controls of cellular and molecular processes. Recent discoveries have revealed various adaptations that enable fungal syncytia to accomplish coordinated behaviors, including cell growth, nuclear division, secretion, communication, and adaptation of the hyphal network for mixing nuclear and cytoplasmic organelles. In this review, we highlight recent studies using advanced technologies to define rules that govern organizing principles of hyphal and colony differentiation, including various aspects of nuclear and mitochondrial cooperation versus competition. We place these findings into context with previous foundational literature and present still unanswered questions on mechanistic aspects, function, and morphological diversity of fungal syncytia across the fungal kingdom.
59 BASIC BIOLOGICAL SCIENCES↗
Adapter Signaling Evaluations on EVs [Slides]
In case J3400 and J3400/1 define a basic analog signaling approach for DC charging adapters to communicate over-temperature events to both the EV and EVSE. They also require the EV to implement mitigation and corrective actions in cases where the EVSE does not respond to adapter thermal signals. In this study, multiple production vehicles were evaluated for responsiveness to assess field readiness and ensure consistent performance in accordance with the SAE J1772, J3400 and J3400/1 standards. A series of test cases were developed and executed across different vehicles, using an adapter thermal breakout fixture designed by NLR for evaluations. The results revealed notable variations in behavior: some vehicles expected to comply with J1772 were found to be non-responsive under certain conditions. Additionally, while some EV OEMs appear to align with the J3400 standard, discrepancies exist due to its evolving nature, resulting in inconsistent implementation of the latest requirements. These findings highlight the need for alignment within standards organizations to ensure consistent interpretation, encourage compliance, and reduce potential confusion across implementations.
33 ADVANCED PROPULSION SYSTEMS↗
Designing and prototyping extensions to the Message Passing Interface in MPICH
As HPC system architectures and the applications running on them continue to evolve, the MPI standard itself must evolve. The trend in current and future HPC systems toward powerful nodes with multiple CPU cores and multiple GPU accelerators makes efficient support for hybrid programming critical for applications to achieve high performance. However, the support for hybrid programming in the MPI standard has not kept up with recent trends. The MPICH implementation of MPI provides a platform for implementing and experimenting with new proposals and extensions to fill this gap and to gain valuable experience and feedback before the MPI Forum can consider them for standardization. Here, in this work, we detail six extensions implemented in MPICH to increase MPI interoperability with other runtimes, with a specific focus on heterogeneous architectures. First, the extension to MPI generalized requests lets applications integrate asynchronous tasks into MPI’s progress engine. Second, the iovec extension to datatypes lets applications use MPI datatypes as a general-purpose data layout API beyond just MPI communications. Third, a new MPI object, MPIX_Stream, can be used by applications to identify execution contexts beyond MPI processes, including threads and GPU streams. MPIX stream communicators can be created to make existing MPI functions thread-aware and GPU-aware, thus providing applications with explicit ways to achieve higher performance. Fourth, MPIX Streams are extended to support the enqueue semantics for offloading MPI communications onto a GPU stream context. Fifth, thread communicators allow MPI communicators to be constructed with individual threads, thus providing a new level of interoperability between MPI and on-node runtimes such as OpenMP. Lastly, we present an extension to invoke MPI progress, which lets users spawn progress threads with fine-grained control to adapt the communication performance to their application designs. We describe the design and implementation of these extensions, provide usage examples, and highlight their expected benefits with performance results.
97 MATHEMATICS AND COMPUTING↗
CORE-BFS: Communication-Optimized REctangular-partitioned BFS Achieving 160.845 TeraTEPS on Frontier Supercomputer
Distributed Breadth-First Search (BFS) is fundamental to many large-scale graph applications, but its performance on parallel systems is often limited by high communication overhead. This paper presents CORE-BFS, an extremely scalable GPU-based BFS implementation that introduces a unique rectangular 2D partitioning-based design for Frontier supercomputer. To further improve performance, we propose four key optimizations: (1) Rectangular 2D-partition specific data formats that use two compressed row and one compressed column status array bitmaps combined with a Double Compressed Sparse Row (DCSR) format per partition, reducing memory footprint and inter-rank traffic; (2) Adaptive frontier & communication strategy that unifies top-down and bottom-up traversal on the rectangular layout, uses lazy synchronization in top-down levels, and switches variants based on frontier size to minimize communication overhead; (3) Frontier-split degree-aware update that maps frontier vertices to thread-centric, wavefront-centric, and block-centric kernels based on their degree to improve GPU utilization and memory coalescing; (4) Row-reduction pipeline that overlaps bottom-up adjacency list processing with row-wise bitmap reduction to hide inter-rank latency. Together, these techniques increase parallelism while reducing memory and communication overhead. On the Graph500 benchmark, CORE - BFS scales up to 9,248 Frontier nodes with scale-42 graphs and reaches 160.845 TTEPS, delivering a 5.42 × speedup over our previous Frontier implementation.
Yang, Haoshen [Rutgers University]↗
GASNet-EX Memory Kinds: Support for Device Memory in PGAS Programming Models
There is an emerging need for adaptive, lightweight communication in irregular HPC applications at exascale, where GPU accelerators provide the majority of available compute cycles. To address this need, Lawrence Berkeley National Lab is developing a programming system to support distributed-memory HPC application development using the Partitioned Global Address Space (PGAS) model. This work includes two major components: UPC++ and GASNet-EX. UPC++ is a C++ template library providing Remote Memory Access (RMA) and Remote Procedure Call (RPC) communication interfaces. GASNet-EX is a portable, high-performance communication middleware library, used by the implementations of UPC++ and many other PGAS programming models. We describe recent advances in GASNet-EX to efficiently implement zero-copy Remote Memory Access (RMA) communication to and from memory on accelerator devices such as GPUs. We demonstrate performance improvements via benchmark results from UPC++ (on Summit) and the Legion programming system (on DGX-1), both using GASNet-EX for communication.
Hargrove, Paul H↗
Digital Engineering & Data Acquisition
This is an Intern Poster submission regarding my research in the digital engineering team. My task was to create a software adapter to communicate between a data acquisition system (LabVIEW) and a data warehouse (Deep Lynx) as described in the poster.
99 GENERAL AND MISCELLANEOUS↗
Architecture Design for Remote Operation of Microreactors: Poster
The nuclear sector is pursuing a number of advanced reactor concepts, one of which is the microreactor, an advanced reactor characterized by a power output of less than 20 MWth. These reactors are intended for use in applications where traditional power solutions are economically or logistically impractical. One key feature required for the successful deployment of microreactors is a remote operation capability, which can dramatically cut staffing expenses by eliminating the need for licensed operators to be present at the site of each reactor and instead concentrate in a centrally located operations center. In moving to a remote operations framework for nuclear reactors, the number of potential attack surfaces for a cyber adversary looking to cause harm or disruption increases. Therefore, a robust cybersecurity architecture is required to mitigate these potential vulnerabilities. This paper explores the functional infrastructure, security, and communication requirements to adapt remote operations to nuclear applications. It then presents a reference architecture for remote operations of microreactors that applies best practices in cybersecurity and remote communications in the context of a digital twin remote operation system.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Structured liquid-based reconfigurable all-liquid optical fibers
Quartz optical fibers are brittle, difficult to repair, and lack reconfigurability, limiting their adaptability in underwater communication. To overcome these impediments, here we show reconfigurable all-liquid optical fibers (RAOFs) produced by structured liquid, tuned by the interfacial assembly and jamming of nanoparticle surfactants at the water-oil interface (interfacial tension <10 mN m -1 , refractive index contrast of 0.083). These RAOFs combine the structural stability of the interfacial assemblies with the inherent flexibility of liquids. They support real-time communication on an Ethernet platform (up to 1 Gbps), providing a practical alternative to conventional optical fibers for optical interconnects. Their liquid nature enables broken fibers to be repaired rapidly by a coalescence process. Their softness affords on-demand reconfigurability that enables in-situ fabrication of reconfigurable optical fibers and dynamic manipulation of signal transmission. RAOFs provide a versatile, self-healing, and resilient solution for optical communication systems in dynamic environments.
Zhao, Sai [City University of Hong Kong, Kowloon (↗