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Results for “Application characterization”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Application Characterization at Scale: Lessons learned from developing a distributed Open Community Runtime system for High Performance Computing

Since 2012, the U.S. Department of Energy’s X-Stack program has been developing solutions including runtime systems, programming models, languages, compilers, and tools for the Exascale system software to address crucial performance and power requirements. Fine grain programming models and runtime systems show a great potential to efficiently utilize the underlying hardware. Thus, they are essential to many X-Stack efforts. An abundant amount of small tasks can better utilize the vast parallelism available on current and future machines. Moreover, finer tasks can recover faster and adapt better, due to a decrease in state and control. Nevertheless, current applications have been written to exploit old paradigms (such as Communicating Sequential Processor and Bulk Synchronous Parallel processing). To fully utilize the advantages of these new systems, applications need to be adapted to these new paradigms. As part of the applications’ porting process, in-depth characterization studies, focused on both application characteristics and runtime features, need to take place to fully understand the application performance bottlenecks and how to resolve them. This paper presents a characterization study for a novel high performance runtime system, called the Open Community Runtime, using key HPC kernels as its vehicle. This study has the following contributions: one of the first high performance, fine grain, distributed memory runtime system implementing the OCR standard (version 0.99a); and a characterization study of key HPC kernels in terms of runtime primitives running on both intra and inter node environments. Running on a general purpose cluster, we have found up to 1635x relative speed-up for a parallel tiled Cholesky Kernels on 128 nodes with 16 cores each and a 1864x relative speed-up for a parallel tiled Smith-Waterman kernel on 128 nodes with 30 cores.

Application characterization↗
DOE OSTI2025

Data for "Discovery, Characterization, and Application of Chromosomal Integration Sites in the Hyperthermophilic Archaeon Sulfolobus islandicus"

Sulfolobus islandicus , an emerging archaeal model organism, offers unique advantages for metabolic engineering and synthetic biology applications owing to its ability to thrive in extreme environments. Although several genetic tools have been established for this organism, the lack of well-characterized chromosomal integration sites has limited its potential as a cellular factory. Here, we systematically identified and characterized 13 artificial CRISPR RNAs targeting eight integration sites in S. islandicus using the CRISPR-COPIES pipeline and a multi-omics-informed computational workflow. We leveraged the endogenous CRISPR-Cas system to integrate the reporter gene lacS and validated heterologous expression through a β-galactosidase assay, revealing significant positional effects. As a proof of concept, we utilized these sites to genetically manipulate lipid ether composition by overexpressing glycerol dibiphytanyl glycerol tetraether (GDGT) ring synthase B (GrsB). This study expands the genetic toolbox for S. islandicus and advances its potential as a robust platform for archaeal synthetic biology and industrial biotechnology.

AI/ML↗
DOE OSTI2024

Experimental Characterization Test of a Grid-Forming Inverter for Microgrid Applications

Standardized experimental testing protocols for grid forming (GFM) inverters to ensure expected operation under both normal and contingency conditions do not exist. Such protocols increase the confidence of system owner/operators that an inverter deployed in a proposed system will engage in typical behaviors to ensure interoperability with other units and ancillary equipment (e.g. protection equipment). This paper presents systematic and comprehensive test protocols to evaluate the performance of GFM inverters under the following operational configurations: islanded operation, heterogeneous islanded operation (parallel with a synchronous generator), grid-connected operation, and transition operation. A commercial GFM inverter is used to verify the test protocols and to understand the inverter's performance and functionalities. In particular, required configuration and tuning of the inverter will be explained in the full paper to enrich the testing protocol.

black start↗
DOE OSTI2017

Prediction and characterization of application power use in a high-performance computing environment

Power use in data centers and high-performance computing (HPC) facilities has grown in tandem with increases in the size and number of these facilities. Substantial innovation is needed to enable meaningful reduction in energy footprints in leadership-class HPC systems. In this paper, we focus on characterizing and investigating application-level power usage. We demonstrate potential methods for predicting power usage based on a priori and in situ characteristics. Lastly, we highlight a potential use case of this method through a simulated power-aware scheduler using historical jobs from a real scientific HPC system.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Discovery, characterization, and application of chromosomal integration sites for stable heterologous gene expression in Rhodotorula toruloides

Rhodotorula toruloides is a non-model, oleaginous yeast uniquely suited to produce acetyl-CoA-derived chemicals. However, the lack of well-characterized genomic integration sites has impeded the metabolic engineering of this organism. Here we report a set of computationally predicted and experimentally validated chromosomal integration sites in R. toruloides. We first implemented an in silico platform by integrating essential gene information and transcriptomic data to identify candidate sites that meet stringent criteria. We then conducted a full experimental characterization of these sites, assessing integration efficiency, gene expression levels, impact on cell growth, and long-term expression stability. Among the identified sites, 12 exhibited integration efficiencies of 50% or higher, making them sufficient for most metabolic engineering applications. Using selected high-efficiency sites, we achieved simultaneous double and triple integrations and efficiently integrated long functional pathways (up to 14.7 kb). Additionally, we developed a new inducible marker recycling system that allows multiple rounds of integration at our characterized sites. Here, we validated this system by performing five sequential rounds of GFP integration and three sequential rounds of MaFAR integration for fatty alcohol production, demonstrating, for the first time, precise gene copy number tuning in R. toruloides. These characterized integration sites should significantly advance metabolic engineering efforts and future genetic tool development in R. toruloides.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Data for Discovery, Characterization, and Application of Chromosomal Integration Sites for Stable Heterologous Gene Expression in Rhodotorula toruloides

Rhodotorula toruloides is a non-model, oleaginous yeast uniquely suited to produce acetyl-CoA-derived chemicals. However, the lack of well-characterized genomic integration sites has impeded the metabolic engineering of this organism. Here we report a set of computationally predicted and experimentally validated chromosomal integration sites in R. toruloides . We first implemented an in silico platform by integrating essential gene information and transcriptomic data to identify candidate sites that meet stringent criteria. We then conducted a full experimental characterization of these sites, assessing integration efficiency, gene expression levels, impact on cell growth, and long-term expression stability. Among the identified sites, 12 exhibited integration efficiencies of 50% or higher, making them sufficient for most metabolic engineering applications. Using selected high-efficiency sites, we achieved simultaneous double and triple integrations and efficiently integrated long functional pathways (up to 14.7 kb). Additionally, we developed a new inducible marker recycling system that allows multiple rounds of integration at our characterized sites. We validated this system by performing five sequential rounds of GFP integration and three sequential rounds of MaFAR integration for fatty alcohol production, demonstrating, for the first time, precise gene copy number tuning in R. toruloides . These characterized integration sites should significantly advance metabolic engineering efforts and future genetic tool development in R. toruloides .

Conversion↗
DOE OSTI2016

Nanostructured cerium oxide: preparation, characterization, and application in energy and environmental catalysis

Nanostructured cerium oxide (CeO 2 ) with outstanding physical and chemical properties has attracted extensive interests over the past few decades in environment and energy-related applications. With controllable synthesis of nanostructured CeO 2 , much more features were technologically brought out from defect chemistry to structure-derived effects. This paper highlights recent progress on the synthesis and characterization of nanostructured ceria-based materials as well as the traditional and new applications. Specifically, several typical applications based on the desired ceria nanostructures are focused to showcase the importance of nanostructure-derived effects. Moreover, some challenges and perspectives on the nanostructured ceria are presented, such as defects controlling and retainment, scale-up fabrication, and monolithic devices. Hopefully, this paper can provide an improved understanding of nanostructured CeO 2 and offer new opportunities to promote the further research and applications in the future.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Discovery, characterization, and application of chromosomal integration sites in the hyperthermophilic archaeon Sulfolobus islandicus

Sulfolobus islandicus , an emerging archaeal model organism, offers unique advantages for metabolic engineering and synthetic biology applications owing to its ability to thrive in extreme environments. Although several genetic tools have been established for this organism, the lack of well-characterized chromosomal integration sites has limited its potential as a cellular factory. Here, in this work, we systematically identified and characterized 13 artificial CRISPR RNAs targeting eight integration sites in S. islandicus using the CRISPR-COPIES pipeline and a multi-omics-informed computational workflow. We leveraged the endogenous CRISPR-Cas system to integrate the reporter gene lacS and validated heterologous expression through a β-galactosidase assay, revealing significant positional effects. As a proof of concept, we utilized these sites to genetically manipulate lipid ether composition by overexpressing glycerol dibiphytanyl glycerol tetraether (GDGT) ring synthase B (GrsB). This study expands the genetic toolbox for S. islandicus and advances its potential as a robust platform for archaeal synthetic biology and industrial biotechnology.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Hydrophobic amine-based binary mixtures of active pharmaceutical and food grade ingredients: characterization and application in indium extraction from aqueous hydrochloric acid media

The wide spread use of hazardous and expensive solvents for the liquid-liquid extraction (LLE) of critical metals has been a growing source of waste in the metal refinement industry. We have developed and characterized room temperature liquid hydrophobic binary mixtures based on common pharmaceutical and food grade compounds as sustainable, cost effective alternatives to both ionic liquids and conventional solvents. Additionally, we introduce liquid mixtures with Proton Sponge® (1,8-bis(dimethylamino)naphthalene), one of the strongest known organic bases. These mixtures have been applied to the LLE of indium(III) ions from hydrochloric acid solutions, displaying an extraction efficiency greater than 99% in some systems. Here, a systematic approach to identifying the underlying mechanism of extraction, in particular relating to the charge, solubility, and complexation of the indium species in the organic phase has been developed.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗
DOE OSTI2018

Graphene Oxide/Polyaniline/Manganese Oxide Ternary Nanocomposites, Facile Synthesis, Characterization, and Application for Indigo Carmine Removal

Graphene oxide/polyaniline/manganese oxide ternary nanocomposites (GO/PANI/Mn{sub 2}O{sub 3}) have been successfully synthesized in one-pot method by in situ chemical oxidative polymerization of aniline in acidic medium using MnO{sub 2} as an oxidant. The obtaining nanocomposites have been characterized by transmission electron microscope, Fourier transform infrared, X-ray powder diffraction, and thermogravimetric analysis. The adsorption isotherms of indigo carmine (IC) onto; PANI, GO/PANI, PANI/MnO{sub 2}, and GO/PANI/Mn{sub 2}O{sub 3} have been evaluated under different adsorption conditions. The adsorption isotherm models of Langmuir, Freundlich, and Temkin were applied and the fit linear was obtained with Langmuir model. It was found that adsorption capacities followed the order: GO/PANI > GO/PANI/Mn{sub 2}O{sub 3} > PANI > PANI/MnO{sub 2} with the values of 88.73, 76.40, 60.45 and 22.52 mg/g. Moreover, the kinetics of the adsorption process was investigated and fit linear was obtained with pseudo-second-order model. The adsorption process was exothermic and spontaneous as revealed from the thermodynamic studies.

36 MATERIALS SCIENCE↗
DOE OSTI2018

α- and β-CoNi binary hydroxides nanostructures: Synthesis, characterization, and application as heterogeneous catalysts

The aim of this study is to show that α- and β-CoNi binary hydroxides nanostructures can be used as heterogeneous catalysts in the oxidation of benzyl alcohol, N-formylation of aniline, and the Claisen–Schmidt condensation. The catalysts were synthesized by hydrothermal method and characterized by XRD, FE-SEM/EDX, FT-IR, TGA, UV–vis and N{sub 2} adsorption-desorption techniques. The α-phase is similar to layered double hydroxide (LDH), while β-phase is isostructural with brucite. In all of the three reactions, the conversion enhanced by increasing the amount of catalysts from 10 to 30 mg, and the catalytic activity of α-phase was better than β-phase. In benzyl alcohol oxidation, the best conversion for α- and β-phases was 90% and 80%, respectively, under solvent-free conditions. In N-formylation, the best yield for both catalysts was obtained 95% in solvent-free conditions. However, the time required for α-phase to reach this amount was a quarter of that for β-phase. For the Claisen–Schmidt condensation, the best yield was obtained at 90 °C, which was 70% and 50% for α- and β-CoNi binary hydroxides, respectively. Both catalysts were stable and subsequent to each step of recovery and reuse, no significant loss in activity was observed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

Peptoid-based hierarchically-structured biomimetic nanomaterials: Synthesis, characterization and applications

Peptoids (or poly-N-substituted glycines) is a promising class of bioinspired sequence-defined polymers due to their highly efficient synthesis, high chemical stability, enzyme hydrolysis resistance, and biocompatibility. By tuning the side chain chemistry of peptoids, it allows for a precise control over sequences and achieving a large side-chain diversity. Due to these unique features, in the last several years, many amphiphilic peptoids were designed as highly tunable building blocks for the preparation of biomimetic nanomaterials with well-defined hierarchical structures and desired functionalities. In this paper, we provide an overview of the recent achievements in this area by dividing them into the following three aspects. First, mica- and silica-templated peptoid self-assembly was summarized. Here, the presence of inorganic substrates provides the guarantee of investigating their self-assembly mechanisms and interactions between peptoids and substrates using nanoscale characterization techniques, particularly in situ atomic force spectroscopy (AFM) and AFM-based dynamic force spectroscopy (AFM-DFS). Second, solution-phase self-assembly of peptoids into nanotubes and nanosheets was presented, as well as their self-repair properties. Third, the applications of peptoid based nanomaterials were outlined, including the construction of catalytic nanomaterials as a template and cytosolic delivery as cargoes.

36 MATERIALS SCIENCE↗
DOE OSTI2016

Characterization and application of a laser-driven intense pulsed neutron source using Trident

A team of Los Alamos researchers supported a final campaign to use the Trident laser to produce neutrons, contributed their multidisciplinary expertise to experimentally assess if laser-driven neutron sources can be useful for MaRIE. MaRIE is the Laboratory’s proposed experimental facility for the study of matter-radiation interactions in extremes. Neutrons provide a radiographic probe that is complementary to x-rays and protons, and can address imaging challenges not amenable to those beams. The team's efforts characterize the Laboratory’s responsiveness, flexibility, and ability to apply diverse expertise where needed to perform successful complex experiments.

43 PARTICLE ACCELERATORS↗
DOE OSTI2021

Linker-Free Magnetite-Decorated Gold Nanoparticles (Fe3O4-Au): Synthesis, Characterization, and Application for Electrochemical Detection of Arsenic (III)

Linker-free magnetite nanoparticles (Fe3O4NPs)-decorated gold nanoparticles (AuNPs) were grown using a new protocol that can be used as a new platform for synthesis of other intact metal–metal oxide nanocomposites without the need for linkers. This minimizes the distance between the metal and metal oxide nanoparticles and ensures the optimum combined effects between the two material interfaces. X-ray diffraction (XRD) and Fourier transform infrared (FTIR) spectroscopy confirmed the successful synthesis of the Fe3O4-Au nanocomposite, without any change in the magnetite phase. Characterization, using transmission electron microscopy (TEM), scanning electron microscopy (SEM) and energy dispersive X-ray (EDX) spectroscopy, revealed the composite to consist of AuNPs of 70 ± 10 nm diameter decorated with tiny 10 ± 3 nm diameter Fe3O4NPs in Au:Fe mass ratio of 5:1. The prepared Fe3O4-Au nanocomposite was embedded in ionic liquid (IL) and applied for the modification of glassy carbon electrode (GCE) for the electrochemical detection of As(III) in water. By combining the excellent catalytic properties of the AuNPs with the high adsorption capacity of the tiny Fe3O4NPs towards As(III), as well as the good conductivity of IL, the Fe3O4-Au-IL nanocomposite showed excellent performance in the square wave anodic stripping voltammetry detection of As(III). Under the optimized conditions, a linear range of 1 to 100 μg/L was achieved with a detection limit of 0.22 μg/L (S/N = 3), and no interference from 100-fold higher concentrations of a wide variety of cations and anions found in water. A very low residual standard deviation of 1.16% confirmed the high precision/reproducibility of As(III) analysis and the reliability of the Fe3O4-Au-IL sensing interface. Finally, this proposed sensing interface was successfully applied to analyzing synthetic river and wastewater samples with a 95–101% recovery, demonstrating excellent accuracy, even in complex synthetic river and wastewater samples containing high concentrations of humic acid without any sample pretreatments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Application Deconfliction Characterization and Alternatives Analysis

This report provides an overview of the domain space and solution techniques that could be used to create a robust, flexible app deconfliction service. Three approaches are reviewed with summaries of the characteristics, elements, and results from preliminary demonstrations of solution techniques based on each approach: 1) rules and heuristics, 2) cooperation, and 3) optimization. The strengths and weaknesses of each solution technique were explored through a set of numerical demonstrations on modified IEEE 123 node and 9500 node test feeders. An alternatives analysis of individual deconfliction elements was performed with each solution technique element evaluated against criteria reflecting the dynamic app environment, need to balance app objectives, and scalability issues versus the number of applications, setpoints, and distributed control areas. It is anticipated that a combined solution for a GridAPPS-D Deconfliction Service can be formulated using a combination of elements from each solution technique. The combined solution would combine 1) device control budgets to reduce the size of the solution space by constraining system setpoints to those will not result in accelerated degradation of physical assets, 2) system operations rules to constrain the solution space by eliminating setpoints that result in violations of system limits or operational best practices, 3) contextual status signals shared with or among apps such that they could update their desired setpoints based on the evolving context, 4) a mediator that incentivizes apps to come to a cooperative solution, and 5) Setpoint-informed optimization as a fallback mechanism if a cooperative solution cannot be agreed upon by applications.

24 POWER TRANSMISSION AND DISTRIBUTION↗