Search NASA⌕ Search

SEARCH · Search NASA

Results for “Bayesian classification”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 records

Bayesian classification of falls risk

Background. Prior research in falls risk prediction often relies on qualitative and/or clinical methods. There are two challenges with these methods. First, qualitative methods typically use falls history to determine falls risk. Second, clinical methods do not quantify the uncertainty in the classification decision. In this paper, we propose using Bayesian classification to predict falls risk using vectors of gait variables shown to contribute to falls risk. Research Questions: (1) Using a vector of risk ratios for specific gait variables shown to contribute to falls risk, how can older adults be classified as low or high falls risk? and (2) how can the uncertainty in the classifier decision be quantified when using a vector of gait variables? Methods. Using a pressure sensitive walkway, biomechanical measurements of gait were collected from 854 adults over the age of 65. In our method, we first determine low and high falls risk labels for vectors of risk ratios using the k-means algorithm. Next, the posterior probability of low or high falls risk class membership is obtained from a two component Gaussian mixture model (GMM) of gait vectors, which enables risk assessment directly from the underlying biomechanics. We classify the gait vectors using a threshold based on Youden's J statistic. Results. Through a Monte Carlo simulation and an analysis of the receiver operating characteristic (ROC), we demonstrate that our Bayesian classifier, when compared to the k-means falls risk labels, achieves an accuracy greater than 96% at predicting low or high falls risk. Significance. Our analysis indicates that our approach based on a Bayesian framework and an individual's underlying biomechanics can predict falls risk while quantifying uncertainty in the classification decision.

59 BASIC BIOLOGICAL SCIENCES↗

Scalable optimal Bayesian classification of single-cell trajectories under regulatory model uncertainty

Single-cell gene expression measurements offer opportunities in deriving mechanistic understanding of complex diseases, including cancer. However, due to the complex regulatory machinery of the cell, gene regulatory network (GRN) model inference based on such data still manifests significant uncertainty. The goal of this paper is to develop optimal classification of single-cell trajectories accounting for potential model uncertainty. Partially-observed Boolean dynamical systems (POBDS) are used for modeling gene regulatory networks observed through noisy gene-expression data. We derive the exact optimal Bayesian classifier (OBC) for binary classification of single-cell trajectories. The application of the OBC becomes impractical for large GRNs, due to computational and memory requirements. To address this, we introduce a particle-based single-cell classification method that is highly scalable for large GRNs with much lower complexity than the optimal solution. The performance of the proposed particle-based method is demonstrated through numerical experiments using a POBDS model of the well-known T-cell large granular lymphocyte (T-LGL) leukemia network with noisy time-series gene-expression data.

59 BASIC BIOLOGICAL SCIENCES↗

Multiclass Classification Using Bayesian Multivariate Adaptive Regression Splines

We present a new Bayesian model for the problem of multiclass classification. In this model, the probabilities of class membership of a given observation are determined by the mean of a latent Gaussian distribution. The mean functions of this latent distribution consist of combinations of highly flexible basis functions of the inputs: multivariate adaptive regression splines (MARS), first developed for multiple regression. We use reversible jump Markov chain Monte Carlo to make inference on the classification model, including the number of basis functions. We compare the probabilistic classification performance of our proposed approach to existing methods on simulated and benchmark data, and compare uncertainty estimates on simulated data. Our proposed method compares favorably with existing Bayesian and frequentist multiclass classification methods in out-of-sample probabilistic classification, and uncertainty estimation of these probabilistic classifications. We examine the fit of the proposed method to a data set of hurricane storm surge levels near Delaware Bay, US, and conclude that sea level rise is a key contributor to damage delivered by storm surge.

97 MATHEMATICS AND COMPUTING↗

Bayesian Redshift Classification of Emission-line Galaxies with Photometric Equivalent Widths

We present a Bayesian approach to the redshift classification of emission-line galaxies when only a single emission line is detected spectroscopically. We consider the case of surveys for high-redshift Lyα-emitting galaxies (LAEs), which have traditionally been classified via an inferred rest-frame equivalent width (EW; W{sub Lyα}) greater than 20 Å. Our Bayesian method relies on known prior probabilities in measured emission-line luminosity functions and EW distributions for the galaxy populations, and returns the probability that an object in question is an LAE given the characteristics observed. This approach will be directly relevant for the Hobby–Eberly Telescope Dark Energy Experiment (HETDEX), which seeks to classify ∼10{sup 6} emission-line galaxies into LAEs and low-redshift [O II] emitters. For a simulated HETDEX catalog with realistic measurement noise, our Bayesian method recovers 86% of LAEs missed by the traditional W{sub Lyα} > 20 Å cutoff over 2 < z < 3, outperforming the EW cut in both contamination and incompleteness. This is due to the method’s ability to trade off between the two types of binary classification error by adjusting the stringency of the probability requirement for classifying an observed object as an LAE. In our simulations of HETDEX, this method reduces the uncertainty in cosmological distance measurements by 14% with respect to the EW cut, equivalent to recovering 29% more cosmological information. Rather than using binary object labels, this method enables the use of classification probabilities in large-scale structure analyses. It can be applied to narrowband emission-line surveys as well as upcoming large spectroscopic surveys including Euclid and WFIRST.

79 ASTRONOMY AND ASTROPHYSICS↗

Galaxy Morphology Classification Using Bayesian Neural Networks for LSST

Within the decade, many new ground and space-based observatories will become operational, generating massive amounts of data on short timescales. New surveys like Rubin Observatory's Legacy Survey of Space and Time (LSST) will be capable of observing objects with greater resolution than ever before, but processing and analyzing these datasets optimally will pose a significant challenge. In an effort to prepare for this, we explore how incorporating Deep Neural Networks can better support future data-intensive Astrophysics tasks such as galaxy morphology classification.

79 ASTRONOMY AND ASTROPHYSICS↗

Bayesian inference for heterogeneous caprock permeability based on above zone pressure monitoring

The presence of faults/ fractures or highly permeable zones in the primary sealing caprock of a CO2 storage reservoir can result in leakage of CO2. Monitoring of leakage requires the capability to detect and resolve the onset, location, and volume of leakage in a systematic and timely manner. Pressure-based monitoring possesses such capabilities. This study demonstrates a basis for monitoring network design based on the characterization of CO2 leakage scenarios through an assessment of the integrity and permeability of the caprock inferred from above zone pressure measurements. Four representative heterogeneous fractured seal types are characterized to demonstrate seal permeability ranging from highly permeable to impermeable. Based on Bayesian classification theory, the probability of each fractured caprock scenario given above zone pressure measurements with measurement error is inferred. The sensitivity to injection rate and caprock thickness is also evaluated and the probability of proper classification is calculated. The time required to distinguish between above zone pressure outcomes and the associated leakage scenarios is also computed.

54 ENVIRONMENTAL SCIENCES↗

SU-E-T-49: Automatic Beam Angle Determination for Lung IMRT Planning Using a Beam Configuration Atlas

Purpose: To present a technique to automatically determine beam angle configurations for lung IMRT planning based on the patient-specific anatomy and tumor geometry. Methods: The relationship between individual patient anatomy and proper beam configurations was learned from high quality clinical plans in three steps. First, a beam configuration atlas was obtained by classifying 60 lung IMRT plans into 6 beam configuration clusters based on a dissimilarity measure defined between different beam configurations. A beam configuration template was extracted from each cluster to form an atlas. Second, a beam efficiency index map (EI map) was constructed to characterize the geometry of the tumor relative to the lungs, the body and other OARs along each candidate beam direction. Finally, the EI maps of the clinical cases and the cluster assignments of their beam configurations were paired to train a Bayesian classification model. This technique was validated by leave-one-out cross validation with 16 cases randomly selected from the original dataset. An IMRT plan (autobeam plan) for each test case was generated using the beam configuration template according to the cluster assignment given by the model and was compared with the corresponding clinical plan. Results: The dosimetric parameters (mean±S.D. in percentage of prescription dose) in the auto-beam plans and in the clinical plans, respectively, and the p-values by a paired ttest (in parenthesis) are: lung Dmean: 16.3±9.3, 18.6±7.4 (0.48), esophagus Dmean: 28.4±18, 30.7±19.3 (0.02), Heart Dmean: 21.5±17.5,21.1±17.2 (0.76), Spinal Cord D2%: 48±23, 51.2±21.8 (0.01), PTV dose homogeneity (D2%–D99%): 22±27.4, 20.4±12.8 (0.10).The dose reductions by the autobeam plans in esophagus Dmean and cord D02 are statistically significant but the differences (<4%) may not be clinically significant. The other dosimetric parameters are not statistically different. Conclusion: Plans generated by the automatic beam angle determination method can achieve dosimetric quality equivalent to that of clinical plans. Partially supported by NIH/NCI under grant #R21CA161389 and a master research grant by Varian Medical System.

60 APPLIED LIFE SCIENCES↗

An ensemble model of QSAR tools for regulatory risk assessment

Quantitative structure activity relationships (QSARs) are theoretical models that relate a quantitative measure of chemical structure to a physical property or a biological effect. QSAR predictions can be used for chemical risk assessment for protection of human and environmental health, which makes them interesting to regulators, especially in the absence of experimental data. For compatibility with regulatory use, QSAR models should be transparent, reproducible and optimized to minimize the number of false negatives. In silico QSAR tools are gaining wide acceptance as a faster alternative to otherwise time-consuming clinical and animal testing methods. However, different QSAR tools often make conflicting predictions for a given chemical and may also vary in their predictive performance across different chemical datasets. In a regulatory context, conflicting predictions raise interpretation, validation and adequacy concerns. To address these concerns, ensemble learning techniques in the machine learning paradigm can be used to integrate predictions from multiple tools. By leveraging various underlying QSAR algorithms and training datasets, the resulting consensus prediction should yield better overall predictive ability. We present a novel ensemble QSAR model using Bayesian classification. The model allows for varying a cut-off parameter that allows for a selection in the desirable trade-off between model sensitivity and specificity. The predictive performance of the ensemble model is compared with four in silico tools (Toxtree, Lazar, OECD Toolbox, and Danish QSAR) to predict carcinogenicity for a dataset of air toxins (332 chemicals) and a subset of the gold carcinogenic potency database (480 chemicals). Leave-one-out cross validation results show that the ensemble model achieves the best trade-off between sensitivity and specificity (accuracy: 83.8 % and 80.4 %, and balanced accuracy: 80.6 % and 80.8 %) and highest inter-rater agreement [kappa (κ): 0.63 and 0.62] for both the datasets. The ROC curves demonstrate the utility of the cut-off feature in the predictive ability of the ensemble model. In conclusion, this feature provides an additional control to the regulators in grading a chemical based on the severity of the toxic endpoint under study.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The spectral energy distributions of Fermi blazars

In this paper, multiwavelength data are compiled for a sample of 1425 Fermi blazars to calculate their spectral energy distributions (SEDs). A parabolic function, log(νF{sub ν})=P{sub 1}(logν−P{sub 2}){sup 2}+P{sub 3}, is used for SED fitting. Synchrotron peak frequency (logν{sub p}), spectral curvature (P{sub 1}), peak flux (ν{sub p}F{sub ν{sub p}}), and integrated flux (νF{sub ν}) are successfully obtained for 1392 blazars (461 flat-spectrum radio quasars [FSRQs], 620 BL Lacs [BLs], and 311 blazars of uncertain type [BCUs]; 999 sources have known redshifts). Monochromatic luminosity at radio 1.4 GHz, optical R band, X-ray at 1 keV and γ-ray at 1 GeV, peak luminosity, integrated luminosity, and effective spectral indices of radio to optical (α{sub RO}) and optical to X-ray (α{sub OX}) are calculated. The “Bayesian classification” is employed to log ν{sub p} in the rest frame for 999 blazars with available redshift, and the results show that three components are enough to fit the log ν{sub p} distribution; there is no ultra-high peaked subclass. Based on the three components, the subclasses of blazars using the acronyms of Abdo et al. are classified, and some mutual correlations are also studied. Conclusions are finally drawn as follows: (1) SEDs are successfully obtained for 1392 blazars. The fitted peak frequencies are compared with common sources from available samples. (2) Blazars are classified as low synchrotron peak sources if log ν{sub p}(Hz)⩽14.0, intermediate synchrotron peak sources if 14.0< log ν{sub p}(Hz)⩽15.3, and high synchrotron peak sources if log ν{sub p}(Hz)>15.3. (3) Gamma-ray emissions are strongly correlated with radio emissions. Gamma-ray luminosity is also correlated with synchrotron peak luminosity and integrated luminosity. (4) There is an anticorrelation between peak frequency and peak luminosity within the whole blazar sample. However, there is a marginally positive correlation for high synchrotron peak BL Lacs (HBLs), and no correlations for FSRQs or low synchrotron peak BL Lacs (LBLs). (5) There are anticorrelations between the monochromatic luminosities (γ-ray and radio bands) and the peak frequency within the whole sample and BL Lacs. (6) The optical to X-ray (α{sub OX}) and radio to optical (α{sub RO}) spectral indices are strongly anticorrelated with peak frequency (log ν{sub p}) within the whole sample, but the correlations for subclasses of FSRQs, LBLs, and HBLs are different.

79 ASTRONOMY AND ASTROPHYSICS↗

Scalable Bayesian Nonparametric Clustering and Classification

We develop a scalable multi-step Monte Carlo algorithm for inference under a large class of nonparametric Bayesian models for clustering and classification. Each step is “embarrassingly parallel” and can be implemented using the same Markov chain Monte Carlo sampler. The simplicity and generality of our approach makes inference for a wide range of Bayesian nonparametric mixture models applicable to large datasets. Specifically, we apply the approach to inference under a product partition model with regression on covariates. We show results for inference with two motivating data sets: a large set of electronic health records (EHR) and a bank telemarketing dataset. We find interesting clusters and competitive classification performance relative to other widely used competing classifiers. Supplementary materials for this article are available online.

97 MATHEMATICS AND COMPUTING↗

Bayesian high-redshift quasar classification from optical and MID-IR photometry

We identify 885,503 type 1 quasar candidates to i≲22 using the combination of optical and mid-IR photometry. Optical photometry is taken from the Sloan Digital Sky Survey-III: Baryon Oscillation Spectroscopic Survey (SDSS-III/BOSS), while mid-IR photometry comes from a combination of data from the Wide-field Infrared Survey Explorer (WISE) “AllWISE” data release and several large-area Spitzer Space Telescope fields. Selection is based on a Bayesian kernel density algorithm with a training sample of 157,701 spectroscopically confirmed type 1 quasars with both optical and mid-IR data. Of the quasar candidates, 733,713 lack spectroscopic confirmation (and 305,623 are objects that we have not previously classified as photometric quasar candidates). These candidates include 7874 objects targeted as high-probability potential quasars with 3.5 3.5 than the traditional mid-IR selection “wedges” and to 2.2 3. This catalog paves the way for luminosity-dependent clustering investigations of large numbers of faint, high-redshift quasars and for further machine-learning quasar selection using Spitzer and WISE data combined with other large-area optical imaging surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

Classifier-guided sampling for discrete variable, discontinuous design space exploration: Convergence and computational performance

A classifier-guided sampling (CGS) method is introduced for solving engineering design optimization problems with discrete and/or continuous variables and continuous and/or discontinuous responses. The method merges concepts from metamodel-guided sampling and population-based optimization algorithms. The CGS method uses a Bayesian network classifier for predicting the performance of new designs based on a set of known observations or training points. Unlike most metamodeling techniques, however, the classifier assigns a categorical class label to a new design, rather than predicting the resulting response in continuous space, and thereby accommodates nondifferentiable and discontinuous functions of discrete or categorical variables. The CGS method uses these classifiers to guide a population-based sampling process towards combinations of discrete and/or continuous variable values with a high probability of yielding preferred performance. Accordingly, the CGS method is appropriate for discrete/discontinuous design problems that are ill-suited for conventional metamodeling techniques and too computationally expensive to be solved by population-based algorithms alone. In addition, the rates of convergence and computational properties of the CGS method are investigated when applied to a set of discrete variable optimization problems. Results show that the CGS method significantly improves the rate of convergence towards known global optima, on average, when compared to genetic algorithms.

42 ENGINEERING↗

Adaptive behavior and different thermal experiences of real people: A Bayesian neural network approach to thermal preference prediction and classification

Various observed and unquantifiable factors affect the thermal comfort of occupants in indoor environments and can lead to high uncertainty in the prediction and classification of their thermal preferences. The behavioral adaptation of occupants, by operating window systems for example, changes their thermal experience and expectations and therefore contributes to even higher prediction uncertainty. In this study, we applied a Bayesian neural network (BNN) algorithm to build a predictive model for occupant thermal preference using the ASHRAE Global Thermal Comfort Database II. The Bayesian method allows us to synthesize prior knowledge and available measurements into a unified modeling framework. It also offers a way to express and quantify uncertainty. Here we have performed a systematic study to test the efficiency and robustness of different BNN model configurations. In this study, the results show that the BNN model outperforms conventional thermal comfort models such as Predicted Mean Vote (PMV) and adaptive comfort model. The BNN model tends to produce more confident “prefer cooler” predictions with high possibility and low uncertainty. In contrast, the BNN model produces less certain predictions for “prefer no change” and “prefer warmer” across all occupants. Our findings suggest that linking occupants’ subjective evaluation measures and window opening/closing behavior to thermal comfort modeling effectively improves predictive performance.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Bayesian Models for Life Prediction and Fault-Mode Classification in Solid State Lamps

A new method has been developed for assessment of the onset of degradation in solid state luminaires to classifY failure mechanisms by using metrics beyond lumen degradation that are currently used for identification of failure. Luminous Flux output, Correlated Color Temperature Data on Philips LED Lamps has been gathered under 85°C/85%RH till lamp failure. The acquired data has been used in conjunction with Bayesian Probabilistic Models to identifY luminaires with onset of degradation much prior to failure through identification of decision boundaries between lamps with accrued damage and lamps beyond the failure threshold in the feature space. In addition luminaires with different failure modes have been classified separately from healthy pristine luminaires. It is expected that, the new test technique will allow the development of failure distributions without testing till L 70 life for the manifestation of failure.

Lall, Pradeep↗

Bayesian probabilistic model for life prediction and fault mode classification of solid state luminaires

A new method has been developed for assessment of the onset of degradation in solid state luminaires to classify failure mechanisms by using metrics beyond lumen degradation that are currently used for identification of failure. Luminous Flux output, Correlated Color Temperature Data on Philips LED Lamps has been gathered under 85°C/85%RH till lamp failure. Failure modes of the test population of the lamps have been studied to understand the failure mechanisms in 85°C/85%RH accelerated test. Results indicate that the dominant failure mechanism is the discoloration of the LED encapsulant inside the lamps which is the likely cause for the luminous flux degradation and the color shift. The acquired data has been used in conjunction with Bayesian Probabilistic Models to identify luminaires with onset of degradation much prior to failure through identification of decision boundaries between lamps with accrued damage and lamps beyond the failure threshold in the feature space. In addition luminaires with different failure modes have been classified separately from healthy pristine luminaires. The α-λ plots have been used to evaluate the robustness of the proposed methodology. Results show that the predicted degradation for the lamps tracks the true degradation observed during 85°C/85%RH during accelerated life test fairly closely within the ±20% confidence bounds. Correlation of model prediction with experimental results indicates that the presented methodology allows the early identification of the onset of failure much prior to development of complete failure distributions and can be used for assessing the damage state of SSLs in fairly large deployments. It is expected that, the new prediction technique will allow the development of failure distributions without testing till L70 life for the manifestation of failure.

Bayesian probability↗

Application of Unbiased Estimators to Group Classification Risk Estimation

We consider the problem of construction of point and interval estimators for the Bayesian risk of a group classification decision rule provided that the elements of training samples have distributions belonging to the same one-parameter exponential family. We propose a solution to this problem using the asymptotic normality and efficiency of an unbiased risk estimator. An example of application of the obtained theoretical results is given.

97 MATHEMATICS AND COMPUTING↗

Exploring Data Set Bias and Decision Support with Predictive Uncertainty Through Bayesian Approximations and Convolutional Neural Networks

Individual seismic catalogs can contain multiscale observations from fault level to global scales and associated waveforms from discrete events reflect crustal structure across many different scales and locations. Seismic network aperture, geographic location, and observation distance may not provide informative guidance or intuition on how different catalogs will behave across models trained under different conditions. We rely on uncertainty to provide guardrails for when to trust model decisions, but understanding when our uncertainty is trustworthy is an open challenge. Here, in this work, we explore Bayesian approximation methods for assigning predictive uncertainty in seismic event classification problems. We find that computationally expensive Bayesian approximations do not outperform simple ensemble methods. We also find that when exploiting multiple seismic event catalogs, joint training with data from all the catalogs combined with Bayesian approximations and supervised training for classification can obscure bias and result in less robust uncertainty while also not providing substantial performance benefits compared to training individual models for each catalog.

58 GEOSCIENCES↗