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At least 19 records

Distributed Augmentation, Hypersweeps, and Branch Decomposition of Contour Trees for Scientific Exploration

Contour trees describe the topology of level sets in scalar fields and are widely used in topological data analysis and visualization. A main challenge of utilizing contour trees for large-scale scientific data is their computation at scale using highperformance computing. To address this challenge, recent work has introduced distributed hierarchical contour trees for distributed computation and storage of contour trees. However, effective use of these distributed structures in analysis and visualization requires subsequent computation of geometric properties and branch decomposition to support contour extraction and exploration. In this work, we introduce distributed algorithms for augmentation, hypersweeps, and branch decomposition that enable parallel computation of geometric properties, and support the use of distributed contour trees as query structures for scientific exploration. Finally, we evaluate the parallel performance of these algorithms and apply them to identify and extract important contours for scientific visualization.

97 MATHEMATICS AND COMPUTING

Extremely Scalable Distributed Computation of Contour Trees via Pre-Simplification

Contour trees offer an abstract representation of the level set topology in scalar fields and are widely used in topological data analysis and visualization. However, applying contour trees to large-scale scientific datasets remains challenging due to scalability limitations. Recent developments in distributed hierarchical contour trees have addressed these challenges by enabling scalable computation across distributed systems. Building on these structures, advanced analytical tasks—such as volumetric branch decomposition and contour extraction—have been introduced to facilitate large-scale scientific analysis. Despite these advancements, such analytical tasks substantially increase memory usage, which hampers scalability. In this paper, we propose a pre-simplification strategy to significantly reduce the memory overhead associated with analytical tasks on distributed hierarchical contour trees. We demonstrate enhanced scalability through strong scaling experiments, constructing the largest known contour tree—comprising over half a trillion nodes with complex topology—in under 15 minutes on a dataset containing 550 billion elements.

Li, Mingzhe [University of Utah]

Convex optimization of contour deformations

We discuss various formal aspects of contour deformations used to alleviate sign problems; most importantly, relating these contour deformations to a certain convex optimization problem. As a consequence of this connection we describe a general method for proving upper bounds on the average phase achievable by the contour deformation method. Using this method we show that Abelian lattice Yang-Mills in two spacetime dimensions possesses, for many values of the complex coupling, an exponential sign problem that cannot be removed via any contour deformation. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

On the lapse contour in the gravitational path integral

The gravitational path integral is usually implemented with a covariant action by analogy with other gauge field theories, but the gravitational case is different in important ways. A key difference is that the integrand has an essential singularity, which occurs at zero lapse where the spacetime metric degenerates. The lapse integration contour required to impose the local time reparametrization constraints must run from − ∞ to + ∞ , yet must not pass through zero. This raises the question: for an application—such as a partition function—where the constraints should be imposed, what is the correct integration contour, and why? We study that question by starting with the reduced phase space path integral, which involves no essential singularity. We observe that if the momenta are to be integrated before the lapse, to obtain a configuration space path integral, the lapse contour should pass below the origin in the complex lapse plane. This contour is also consistent with the requirement that quantum field fluctuation amplitudes have the usual short distance vacuum form, and with obtaining the Bekenstein-Hawking horizon entropy from a Lorentzian path integral. Published by the American Physical Society 2025

Banihashemi, Batoul (ORCID:0000000228679209)

Cuts and contours

The traditional formulation of string amplitudes via worldsheet integrals provides a parametrization of the moduli space that fails to expose the complete singularity structure of the amplitudes. This problem is solved by the positive parametrization of string amplitudes given by surfaceology. In this work, we use this formalism to study a number of properties of string amplitudes at tree-level and one-loop. We introduce several global prescriptions for an integration contour for which the integrals are finite everywhere in kinematic space. At tree-level, this is done in two ways: one directly implements the Feynman iε to analytically continue from Euclidean to Lorentzian worldsheets; the other is a generalization of the closed Pochhammer contour to arbitrary number of points. At loop-level, we present a systematic way of extracting cuts directly from the worldsheet integrand. This provides a powerful set of unitarity constraints, which we use to test the consistency of different “stringy” UV regularizations of field theory amplitudes. In addition, we identify the massive threshold expansion of the integrand, which allows us to reduce the problem to a finite set of Feynman integrals in Schwinger parametrization and provide a straightforward contour prescription reminiscent of its field-theory version.

Bosonic Strings

Lorentzian contours for tree-level string amplitudes

We engineer compact contours on the moduli spaces of genus-zero Riemann surfaces that achieve analytic continuation from Euclidean to Lorentzian worldsheets. These generalized Pochhammer contours are based on the combinatorics of associahedra and make the analytic properties of tree-level amplitudes entirely manifest for any number and type of external strings. We use them in practice to perform first numerical computations of open and closed string amplitudes directly in the physical kinematics for n=4,5,6,7,8,9 n = 4 , 5 , 6 , 7 , 8 , 9 . We provide a code that allows anyone to do such computations.

Physics

Identifying Topological Defects in Lamellar Phases through Contour Analysis of Complex Wave Fields

Lamellar phases frequently contain structural imperfections that significantly affect their behaviors and properties. Our previous research successfully reconstructed real-space configurations of defective lamellar phases from diffuse scattering patterns, indicating the presence of phase vortices as a potential method for identifying topological defects disrupting the smectic ordering. Here, this report presents a mathematical framework using regularized wave fields to represent defective lamellar structures in real space. Phase singularities, resulting from the interference of random waves and indicating lamellar order disruption, are identified through a contour integral. These wave fields, derived from coherent scattering in reciprocal space, were validated via computational benchmarks analyzing small-angle neutron scattering data from AOT surfactant solutions, facilitating further statistical analysis of the defects. Our study highlights the potential to extract meaningful information about topological defects in lyotropic phases by inversely analyzing experimentally measured two-point static correlations. Our method allows for detailed structural analysis of various lyotropic phases, both particulate and nonparticulate, in their quiescent states and facilitates quantitative investigation of defects’ role in phase transitions. By integrating small-angle scattering, deep learning, and vortex tangle analysis, our comprehensive approach shows promise in addressing complex challenges in the structural analysis of soft matter systems.

36 MATERIALS SCIENCE

Locating the QCD critical point through contours of constant entropy density

We propose a new method to investigate the existence and location of the conjectured high-temperature critical point of strongly interacting matter via contours of constant entropy density. By approximating these lines as a power series in the baryon chemical potential 𝜇 𝐵 , one can extrapolate them from first-principle results at zero net-baryon density, and use them to locate the quantum chromodynamics (QCD) critical point, including the associated first-order and spinodal lines. As a proof of principle, we employ currently available continuum-extrapolated lattice data from the Wuppertal-Budapest collaboration to find a critical point at a temperature and a baryon chemical potential of 𝑇 𝑐 = 114.3 ± 6.9 MeV and 𝜇 𝐵,𝑐 = 602.1 ± 62.1 MeV, respectively, at expansion order 𝒪⁡(𝜇$^{2}_{𝐵}$). We advocate for a more precise determination of the required expansion coefficients via lattice QCD simulations as a means of pinpointing the location of the critical endpoint in the phase diagram of strongly interacting matter.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS

Contour deformations for nonholomorphic actions

We show how contour deformations may be used to control the sign problem of lattice Monte Carlo calculations with nonholomorphic Boltzmann factors. Such actions arise naturally in quantum mechanical scattering problems. The approach is demonstrated in conjunction with the holomorphic gradient flow. As our central example we compute the real-time evolution of a particle in a one-dimensional analog of the Yukawa potential. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

Elliptically-Contoured Tensor-variate Distributions with Application to Image Learning

Statistical analysis of tensor-valued data has largely used the tensor-variate normal (TVN) distribution that may be inadequate for data arising from distributions with heavier or lighter tails. We study a general family of elliptically contoured (EC) TV distributions and derive its characterizations, moments, marginal, and conditional distributions. We describe procedures for maximum likelihood estimation from data that are (1) uncorrelated draws from an EC distribution, (2) from a scale mixture of the TVN distribution, and (3) from an underlying but unknown EC distribution, for which we extend Tyler’s robust estimator. A detailed simulation study highlights the benefits of choosing an EC distribution over the TVN for heavier-tailed data. We develop TV classification rules using discriminant analysis and EC errors and show that they better predict cats and dogs from images in the Animal Faces-HQ dataset than the TVN-based rules. A novel tensor-on-tensor regression and TV analysis of variance (TANOVA) framework under EC errors is also demonstrated to better characterize gender, age, and ethnic origin than the usual TVN-based TANOVA in the celebrated labeled faces of the wild dataset.

97 MATHEMATICS AND COMPUTING

Joint Contour Location

The joint contour location method is an active learning technique that identifies input configurations that return pre-specified values of multiple independent computer experiments simultaneously. This code works with both Gaussian Processes and Deep Gaussian Processes

Quinlan, KevinR [Lawrence Livermore National Labor

Modeling inter‐reader variability in clinical target volume delineation for soft tissue sarcomas using diffusion model

Abstract Background Accurate delineation of the clinical target volume (CTV) is essential in the radiotherapy treatment of soft tissue sarcomas. However, this process is subject to inter‐reader variability due to the need for clinical assessment of risk and extent of potential microscopic spread. This can lead to inconsistencies in treatment planning, potentially impacting treatment outcomes. Most existing automatic CTV delineation methods do not account for this variability and can only generate a single CTV for each case. Purpose This study aims to develop a deep learning‐based technique to generate multiple CTV contours for each case, simulating the inter‐reader variability in the clinical practice. Methods We employed a publicly available dataset consisting of fluorodeoxyglucose positron emission tomography (FDG‐PET), x‐ray computed tomography (CT), and pre‐contrast T1‐weighted magnetic resonance imaging (MRI) scans from 51 patients with soft tissue sarcoma, along with an independent validation set containing five additional patients. An experienced reader drew a contour of the gross tumor volume (GTV) for each patient based on multi‐modality images. Subsequently, two additional readers, together with the first one, were responsible for contouring three CTVs in total based on the GTV. We developed a diffusion model‐based deep learning method that is capable of generating arbitrary number of different and plausible CTVs to mimic the inter‐reader variability in CTV delineation. The proposed model incorporates a separate encoder to extract features from the GTV masks, leveraging the critical role of GTV information in accurate CTV delineation. Results The proposed diffusion model demonstrated superior performance with the highest Dice Index (0.902 compared to values below 0.881 for state‐of‐the‐art models) and the best generalized energy distance (GED) (0.209 compared to values exceeding 0.221 for state‐of‐the‐art models). It also achieved the second‐highest recall and precision metrics among the compared ambiguous image segmentation models. Results from both datasets exhibited consistent trends, reinforcing the reliability of our findings. Additionally, ablation studies exploring different model structures and input configurations highlighted the significance of incorporating prior GTV information for accurate CTV delineation. Conclusions The proposed diffusion model successfully generates multiple plausible CTV contours for soft tissue sarcomas, effectively capturing inter‐reader variability in CTV delineation.

Dong, Yafei [Yale Biomedical Imaging Institute Yal

Hadamard products and BPS networks

We study examples of fourth-order Picard-Fuchs operators that are Hadamard products of two second-order Picard-Fuchs operators. Each second-order Picard-Fuchs operator is associated with a family of elliptic curves, and the Hadamard product computes period integrals on the fibred product of the two elliptic surfaces. We construct 3-cycles on this geometry as the union of 2-cycles in the fibre over contours on the base. We then use the special Lagrangian condition to constrain the contours on the base. This leads to a construction that is reminiscent of spectral networks and exponential networks that have previously appeared in string theory literature.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

A Gauss-Radau-Laguerre Discrete Variable Representation for Use in Continuum Electron Dynamics

In this work, we detail an implementation, suitable for calculations on highly correlated ionizing systems, of a modified finite element discrete variable representation (FE-DVR) appended with a Gauss-Radau-Laguerre element. The appended element includes exterior complex scaling (ECS) to impose outgoing wave boundary conditions on treatments of processes involving continuum electrons. In this “infinite range” ECS (irECS), the complications that introduce reflections from the end of the grid when the last ECS finite element has finite range are avoided by the use of the Laguerre-weighted exponentially decaying tails, while outgoing wave boundary conditions are still imposed via the ECS transformation. For highly correlated systems in the absence of strong external fields we find that accurate two-electron integrals are essential in this modified FE-DVR. To accurately compute the two-electron integrals over the entire ECS contour, we present a detailed examination of the implications from the boundary terms that arise in a solution of Poisson’s equation with the Radau-Laguerre basis. A boundary term correction is necessary, and when included, the Radau-Laguerre DVR can accurately describe highly correlated states such as the doubly excited states of helium over the entire ECS contour.

elements

Source shape estimation for neutron imaging systems using convolutional neural networks

Neutron imaging systems are important diagnostic tools for characterizing the physics of inertial confinement fusion reactions at the National Ignition Facility (NIF). In particular, neutron images give diagnostic information on the size, symmetry, and shape of the fusion hot spot and surrounding cold fuel. Images are formed via collection of neutron flux from the source using a system of aperture arrays and scintillator-based detectors. Currently, reconstruction of fusion source geometry from the collected neutron images is accomplished by solving a computationally intensive maximum likelihood estimation problem via expectation maximization. In contrast, it is often useful to have simple representations of the overall source geometry that can be computed quickly. In this work, we develop convolutional neural networks (CNNs) to reconstruct the outer contours of simple source geometries. We compare the performance of the CNN for penumbral and pinhole data and provide experimental demonstrations of our methods on both non-noisy and noisy data.

Machine learning, neutron imaging, source reconstr