POWGEN PAC calibration for 2025A CWL 0.8A
POWGEN PAC calibration for 2025A CWL 0.8A
36 MATERIALS SCIENCE↗
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Testing quantum gravity using pulsed optomechanical systems
An interesting idea, dating back to Feynman [Report from Chapel Hill Conference, edited by C. M. DeWitt and D. Rickles (1957)], argues that quantum mechanics may break down for large masses if one entertains the possibility that gravity can be “classical,” thereby leading to predictions different from conventional low-energy quantum gravity. Despite the technical difficulty in testing such deviations, a large number of experimental proposals have been put forward due to the high level of fundamental interest. Here, we consider the Schrödinger-Newton (SN) theory and the correlated worldline (CWL) theory, and show that they can be distinguished from conventional quantum mechanics, as well as each other, by performing pulsed optomechanics experiments. For CWL specifically we develop a framework resembling the commonly used “Heisenberg-picture” treatment of coupled oscillators, allowing one to perform simple calculations for such systems without delving into the deeper path-integral formalism. We find that discriminating between the theories will be very difficult until experimental control over low frequency quantum optomechanical systems is pushed much further. Furthermore, the predicted departures of SN and CWL from quantum mechanics occur at the same scale, so both alternative models could in principle be probed by a single experiment.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Improving coastal water level estimation by merging nadir-only satellite altimetry data into a hydrodynamic model
Providing robust real time flood warnings is of paramount importance to coastal communities. Although state-of-the-art hydrodynamic models are capable of robustly predicting Coastal Water Levels (CWL), unresolved drivers affecting level fluctuations are often not represented by the model governing equations. This work evaluates a novel method to improve the performance of the ADvanced CIRCulation (ADCIRC) hydrodynamic model by assimilating observations from four nadir-only satellite altimetry missions against a set of National Oceanic and Atmospheric Administration (NOAA) gauge stations located across the entire U.S. East Coast. Two different types of simulations were performed – Open Loop (OL) and Data Assimilation (DA). Five different simulations were performed where four different satellite altimetry observations were assimilated individually and combined with two different scenarios – with and without considering the data quality flags. Results indicate that, despite their limited spatial coverage, merging nadir-only observations into ADCIRC from the newly launched Surface Water and Ocean Topography (SWOT)’s nadir altimeter can improve the model performance at 76% of the gauge locations, whereas Sentinel-6 improves 73% of the total locations, Jason-3 74%, and SARAL 21%. Furthermore, combining observations from SWOT-nadir, Jason-3, and Sentinel-6 can improve the ADCIRC performance at more than 80% of the gauge locations for 107-day simulation. Nadir-only satellite altimetry observations can be useful for improving the model performance even if flagged as “poor quality” near the coast. When the flagged data are disregarded, SWOT can improve ADCIRC at 78%, Sentinel-6 at 73%, Jason-3 at 53%, and SARAL at 21% of the gauge locations. The ability to improve the model simulations largely depends on the availability of a satellite overpass nearby. Therefore, model performance can be further enhanced if satellite observations are available during a storm surge event, stressing the importance of frequent satellite overpasses.
Aafnan Bhuiyan, Soelem↗
Decomprolute is a benchmarking platform designed for multiomics-based tumor deconvolution
Tumor deconvolution is a reliable way to disentangle the diverse cell types that comprise solid tumors. To date, however, both the algorithms developed to deconvolve tumor samples, and the gold standard datasets used to assess the algorithms are geared toward the analysis of gene expression (e.g., RNA-seq) rather than protein levels in tumor cells. While gene expression is less expensive to measure, protein levels provide a more accurate view of immune markers. To facilitate the development as well as improve the reproducibility and reusability of multi-omic deconvolution algorithms, we introduce Decomprolute, a Common Workflow Language framework that leverages containerization to compare tumor deconvolution algorithms across multiomic data sets. Decomprolute incorporates the large-scale multiomic data sets produced by the Clinical Proteomic Tumor Analysis Consortium (CPTAC), which include matched mRNA expression and proteomic data from thousands of tumors across multiple cancer types to build a fully open-source, containerized proteogenomic tumor deconvolution benchmarking platform. The platform consists of modular architecture and it comes with well-defined input and output formats at each module. As a result, it is robust and extendable easily with additional algorithms or analyses. The platform is available for access and use at http://pnnl-compbio.github.io/decomprolute.
60 APPLIED LIFE SCIENCES↗