Conformational model of active transport
Monovalent cations active transport model in mitochondria, noting membrane potential as driving force and ion pump omission
Blondin, G. A.↗
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Rotary balance data for an F-15 model with conformal fuel tanks for an angle-of-attack range of 8 deg to 90 deg
Aerodynamic characteristics obtained in a rotational flow environment, utilizing a rotary balance, are presented in plotted form for a 1/12 scale conformal fuel tank equipped F-15 airplane model. The configurations tested included in the buildup of airplane components and the basic airplane with various control deflections. Data are presented for all configurations without analysis for an angle of attack range of 8 to 90 deg, and clockwise and counterclockwise rotations covering an omega b/2V range from 0 to 0.4. Selected configurations are presented over an extended omega b/2V range from 0 to 0.9.
Barnhart, B.↗
The effect of different resistivity models on magnetotail dynamics
Two-dimensional, time-dependent MHD simulations of the interaction between the solar wind and the earth's magnetosphere have been performed to study magnetotail dynamics with varying forms of anomalous resistivity. In general, the resulting models conform to the neutral line model proposed for substorms with near-earth x points and high-speed tailward flows occurring in the magnetotail. However, in the case where Joule heating is included in the physical description of the system, the near-earth x point never moves far down tail, and high-speed tailward flows never stop. Only in the case where there is no Joule heating does the x point move down tail. Simultaneously, the high-speed tailward flows cease. These results indicate that the mechanism of energy dissipation can have an important effect on reconnection processes and the global magnetospheric dynamics.
Lyon, J. G.↗
Experimental investigation of a 0.15 scale model of a conformal variable-ramp inlet for the F-16 airplane
A 0.15 scale model of a proposed conformal variable-ramp inlet for the Multirole Fighter was tested from Mach 0.8 to 2.2 at a wide range of angles of attack and sideslip. Inlet ramp angle was varied to optimize ramp angle as a function of engine airflow, Mach number, angle of attack, and angle of sideslip. Several inlet configuration options were investigated to study their effects on inlet operation and to establish the final flight configuration. These variations were cowl sidewall cutback, cowl lip bluntness, boundary layer bleed, and first-ramp leading edge shape. Diagnostic and engine face instrumentation were used to evaluate inlet operation at various inlet stations and at the inlet/engine interface. Pressure recovery and stability of the inlet were satisfactory for the proposed application. On the basis of an engine stability audit of the worst-case instantaneous distortion patterns, no inlet/engine compatibility problems are expected for normal operations.
Hawkins, J. E.↗
Advanced very high resolution radiometer
The program covered the design, construction, and test of a Breadboard Model, Engineering Model, Protoflight Model, Mechanical/Structural Model, and a Life Test Model. Special bench test and calibration equipment was also developed for use on the program. Initially, the instrument was to operate from a 906 n.mi. orbit and be thermally isolated from the spacecraft. The Breadboard Model and the Mechanical/Structural Model were designed and built to these requirements. The spacecraft altitude was changed to 450 n.mi., IFOVs and spectral characteristics were modified, and spacecraft interfaces were changed. The final spacecraft design provided a temperature-controlled Instrument Mounting Platform (IMP) to carry the AVHRR and other instruments. The design of the AVHRR was modified to these new requirements and the modifications were incorporated in the Engineering Model. The Protoflight Model and the Flight Models conform to this design.
Source record↗
Reply to "Comment on the Paper ''On the Determination of Electron Polytrope Indices Within Coronal Mass Ejections in the Solar Wind'"'
We strongly disagree with the essence of the Osherovich (hereafter Osherovich) comment on one of our papers. The following paragraphs provide the basis of our disagreement and elaborate on why we believe that none of the concluding statements in his Comment are true. Our most important point is that one can apply the model developed by Osherovich and colleagues to real data obtained at a single point in space to determine the polytropic index within magnetic clouds if and only if the highly idealized assumptions of that model conform to physical reality. There is good reason to believe that those assumptions do not provide an accurate physical description of real magnetic clouds in the spherically expanding solar wind.
Gosling, J. T.↗
Conformational Characteristics of Poly(tetrafluoroethylene) (PTFE) Based Upon Ab Initio Electronic Structure Calculations on Model Molecules
Conformational energy contours of perfluoroalkanes, determined from ab initio calculations, confirm the well-known spitting of trans states into two minima at plus or minus 17 degrees but also show that the gauche states split as well, with minima at plus or minus 124 degrees and plus or minus 84 in order to relieve steric crowding. The directions of such split distortions from the perfectly staggered states are strongly coupled for adjacent pairs of bonds in a manner identical to the intradyad pair for poly (isobutylene) chains. These conformational characteristics are fully represented by a six-state rotational isomeric state (RIS) model for PTFE comprised of t(+), t(-), g(sup +)+, g(sup +)-, g(sup -) + and g(sup -)-states, located at the split energy minima. The resultant 6 x 6 statistical weight matrix is described by first-order interaction parameters for the g+(+) (ca. 0.6 kcal/mol) and g+- (ca. 2.0 kcal/mol) states, and second order parameters for the g(sup +)+g(sup +)+ (ca 0.6 kcal/mol) and g(sup +)+g(sup -)+ (ca. 1.0 kcal/mol) states. This six-state RIS model, without adjustment of the geometric or energy parameters as determined from the ab initio calculations, predicts the unperturbed chain dimensions and the fraction of gauche bonds as a function of temperature for PTFE in good agreement with available experimental values.
Smith, Grant D.↗
Electromagnetic Modeling for the Conformal Lightweight Antenna System for Aeronautical Communications Technologies (CLAS-ACT) Program: Final Report
A series of electromagnetic simulations was conducted for the Conformal Lightweight Antenna System for Aeronautical Communications Technologies (CLAS-ACT) Program. The program designed, built, and flight tested a 14.25 GHz conformal patch array antenna for satellite communications on a T-34C airplane. Various studies were performed to evaluate the effects of antenna element spacing, array shape, signal taper, phased array pointing angle, null steering coefficients, antenna platform, and location on the airplane. This report documents the methods and some of the results of tests done over a 2 ½ year period.
Mackenzie, Anne I.↗
Modeling of a possible conformational change associated with the catalytic mechanism in the hammerhead ribozyme
Here we describe a possible model of the cleavage mechanism in the hammerhead ribozyme. In this model, the 2' hydroxyl of C17 is moved into an appropriate orientation for an in-line attack on the G1.1 phosphate through a change in its sugar pucker from C3' endo to C2' endo. This conformational change in the active site is caused by a change in the uridine turn placing the N2 and N3 atoms of G5 of the conserved core in hydrogen bonding geometry with the N3 and N2 atoms on the conserved G16.2 residue. The observed conformational change in the uridine turn suggests an explanation for the conservation of G5. In the crystal structure of H.M. Pley et al., Nature 372, 68-74 (1994), G5 is situated 5.3A away from G16.2. However, the uridine turn is sufficiently flexible to allow this conformational change with relatively modest changes in the backbone torsion angles (average change of 14.2 degrees). Two magnesium ions were modeled into the active site with positions analogous to those described in the functionally similar Klenow fragment 3'-5' exonuclease (L.S. Beese and T.A. Steitz, EMBO J. 10, 25-33 (1991)), the Group I intron (T.A. Steitz and J.A. Steitz, P.N.A.S. U.S.A. 90, 6498-6502 (1993); R.F. Setlik et al., J. Biomol. Str. Dyn. 10, 945-972 (1993)) and other phosphotransferases. Comparison of this model with one in which the uridine turn conformation was not changed showed that although the changes in the C17 sugar pucker could be modeled, insufficient space existed for the magnesium ions in the active site.
Non-NASA Center↗
Monte Carlo lattice models for adsorbed polymer conformation
The adhesion between a polymer film and a metal surface is of great technological interest. However, the prediction of adhesion and wear properties of polymer coated metals is quite difficult because a fundamental understanding of the polymer surface interaction does not yet exist. A computer model for the conformation of a polymer molecule adsorbed on a surface is discussed. The chain conformation is assumed to be described by a partially directed random walk on a three dimensional simple cubic lattice. An attractive surface potential is incorporated into the model through the use of a random walk step probability distribution that is anisotropic in the direction normal to the attractive surface. The effects of variations in potential characteristics are qualitatively included by varying both the degree of anisotropy of the step distribution and the range of the anisotropy. Polymer conformation is characterized by the average end to end distance, average radius of gyration, and average number of chain segments adsorbed on the surface.
Good, B. S.↗
A finite element-boundary integral method for conformal antenna arrays on a circular cylinder
Conformal antenna arrays offer many cost and weight advantages over conventional antenna systems. In the past, antenna designers have had to resort to expensive measurements in order to develop a conformal array design. This was due to the lack of rigorous mathematical models for conformal antenna arrays. As a result, the design of conformal arrays was primarily based on planar antenna design concepts. Recently, we have found the finite element-boundary integral method to be very successful in modeling large planar arrays of arbitrary composition in a metallic plane. We are extending this formulation to conformal arrays on large metallic cylinders. In doing so, we will develop a mathematical formulation. In particular, we discuss the finite element equations, the shape elements, and the boundary integral evaluation. It is shown how this formulation can be applied with minimal computation and memory requirements.
Kempel, Leo C.↗
A finite element-boundary integral method for conformal antenna arrays on a circular cylinder
Conformal antenna arrays offer many cost and weight advantages over conventional antenna systems. In the past, antenna designers have had to resort to expensive measurements in order to develop a conformal array design. This is due to the lack of rigorous mathematical models for conformal antenna arrays, and as a result the design of conformal arrays is primarily based on planar antenna design concepts. Recently, we have found the finite element-boundary integral method to be very successful in modeling large planar arrays of arbitrary composition in a metallic plane. Herewith we shall extend this formulation for conformal arrays on large metallic cylinders. In this we develop the mathematical formulation. In particular we discuss the finite element equations, the shape elements, and the boundary integral evaluation, and it is shown how this formulation can be applied with minimal computation and memory requirements. The implementation shall be discussed in a later report.
Kempel, Leo C.↗
A finite element-boundary integral method for cavities in a circular cylinder
Conformal antenna arrays offer many cost and weight advantages over conventional antenna systems. However, due to a lack of rigorous mathematical models for conformal antenna arrays, antenna designers resort to measurement and planar antenna concepts for designing non-planar conformal antennas. Recently, we have found the finite element-boundary integral method to be very successful in modeling large planar arrays of arbitrary composition in a metallic plane. We extend this formulation to conformal arrays on large metallic cylinders. In this report, we develop the mathematical formulation. In particular, we discuss the shape functions, the resulting finite elements and the boundary integral equations, and the solution of the conformal finite element-boundary integral system. Some validation results are presented and we further show how this formulation can be applied with minimal computational and memory resources.
Kempel, Leo C.↗
Structural models of the MscL gating mechanism
Three-dimensional structural models of the mechanosensitive channel of large conductance, MscL, from the bacteria Mycobacterium tuberculosis and Escherichia coli were developed for closed, intermediate, and open conformations. The modeling began with the crystal structure of M. tuberculosis MscL, a homopentamer with two transmembrane alpha-helices, M1 and M2, per subunit. The first 12 N-terminal residues, not resolved in the crystal structure, were modeled as an amphipathic alpha-helix, called S1. A bundle of five parallel S1 helices are postulated to form a cytoplasmic gate. As membrane tension induces expansion, the tilts of M1 and M2 are postulated to increase as they move away from the axis of the pore. Substantial expansion is postulated to occur before the increased stress in the S1 to M1 linkers pulls the S1 bundle apart. During the opening transition, the S1 helices and C-terminus amphipathic alpha-helices, S3, are postulated to dock parallel to the membrane surface on the perimeter of the complex. The proposed gating mechanism reveals critical spatial relationships between the expandable transmembrane barrel formed by M1 and M2, the gate formed by S1 helices, and "strings" that link S1s to M1s. These models are consistent with numerous experimental results and modeling criteria.
NASA Discipline Cell Biology↗
Supercritical tests of a self-optimizing, variable-Camber wind tunnel model
A testing procedure was used in a 16-foot Transonic Propulsion Wind Tunnel which leads to optimum wing airfoil sections without stopping the tunnel for model changes. Being experimental, the optimum shapes obtained incorporate various three-dimensional and nonlinear viscous and transonic effects not included in analytical optimization methods. The method is a closed-loop, computer-controlled, interactive procedure and employs a Self-Optimizing Flexible Technology wing semispan model that conformally adapts the airfoil section at two spanwise control stations to maximize or minimize various prescribed merit functions subject to both equality and inequality constraints. The model, which employed twelve independent hydraulic actuator systems and flexible skins, was also used for conventional testing. Although six of seven optimizations attempted were at least partially convergent, further improvements in model skin smoothness and hydraulic reliability are required to make the technique fully operational.
Levinsky, E. S.↗
Microwave solar limb brightening
Previous models of microwave limb brightening have omitted the alignment of spicules along supergranule boundaries, have neglected the high temperature sheath around spicules, and have assumed an interspicular medium which was averaged over chromospheric network and nonnetwork regions. A model is presented here which includes these factors. Constraining the model to conform to results from earlier UV and optical studies in effect leaves two free parameters: the temperature at the core of the spicules and (at solar minimum) the interspicular chromospheric network density model of the lower transition zone. The absence of limb brightening at the short millimeter wavelengths implies a temperature at the core of the spicules less than approximately 6000 K. Differences between the model and certain deconvolved observations near 9 mm are expected as a consequence of an extension of emission beyond the optical limb, predicted by the model, which affects the accuracy of the deconvolution technique. Unlike models which assume homogeneous spicules in a random distribution, the model presented here does not require an abnormally high spicule area.
Ahmad, I. A.↗
Plan-graph Based Heuristics for Conformant Probabilistic Planning
In this paper, we introduce plan-graph based heuristics to solve a variation of the conformant probabilistic planning (CPP) problem. In many real-world problems, it is the case that the sensors are unreliable or take too many resources to provide knowledge about the environment. These domains are better modeled as conformant planning problems. POMDP based techniques are currently the most successful approach for solving CPP but have the limitation of state- space explosion. Recent advances in deterministic and conformant planning have shown that plan-graphs can be used to enhance the performance significantly. We show that this enhancement can also be translated to CPP. We describe our process for developing the plan-graph heuristics and estimating the probability of a partial plan. We compare the performance of our planner PVHPOP when used with different heuristics. We also perform a comparison with a POMDP solver to show over a order of magnitude improvement in performance.
Ramakrishnan, Salesh↗
Emergence of a replicating species from an in vitro RNA evolution reaction
The technique of self-sustained sequence replication allows isothermal amplification of DNA and RNA molecules in vitro. This method relies on the activities of a reverse transcriptase and a DNA-dependent RNA polymerase to amplify specific nucleic acid sequences. We have modified this protocol to allow selective amplification of RNAs that catalyze a particular chemical reaction. During an in vitro RNA evolution experiment employing this modified system, a unique class of "selfish" RNAs emerged and replicated to the exclusion of the intended RNAs. Members of this class of selfish molecules, termed RNA Z, amplify efficiently despite their inability to catalyze the target chemical reaction. Their amplification requires the action of both reverse transcriptase and RNA polymerase and involves the synthesis of both DNA and RNA replication intermediates. The proposed amplification mechanism for RNA Z involves the formation of a DNA hairpin that functions as a template for transcription by RNA polymerase. This arrangement links the two strands of the DNA, resulting in the production of RNA transcripts that contain an embedded RNA polymerase promoter sequence.
Non-NASA Center↗