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Results for “Conformational dynamics”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
NASA NTRS2004

Towards Measurement of the Time-resolved Heat Release of Protein Conformation Dynamics

We present a way to observe time-resolved heat release using a laminar flow diffusional mixer coupled with a highly sensitive infrared camera which measures the temperature change of the solvent. There are significant benefits to the use of laminar flow mixers for time-resolved calorimetry: (1) The thermal signal can be made position and time- stationary to allow for signal integration; (2) Extremely small volumes (nl/s) of sample are required for a measurement; (3) The same mixing environment can be observed spectroscopically to obtain state occupation information; (4) The mixer allows one to do out of equilibrium dynamic studies. The hope is that these measurements will allow us probe the non-equilibrium thermodynamics as a protein moves along a free energy trajectory from one state to another.

Puchalla, Jason↗
NASA NTRS1994

Dielectric Properties of Poly(ethylene oxide) from Molecular Dynamics Simulations

The order, conformations and dynamics of poly(oxyethylene) (POE) melts have been investigated through molecular dynamics simulations. The potential energy functions were determined from detailed ab initio electronic structure calculations of the conformational energies of the model molecules 1,2-dimethoxyethane (DME) and diethylether. The x-ray structure factor for POE from simulation will be compared to experiment. In terms of conformation, simulations reveal that chains are extended in the melt relative to isolated chains due to the presence of strong intermolecular O...H interactions, which occur at the expense of intramolecular O...H interactions. Conformational dynamics about the C-C bond were found to be significantly faster than in polymethylene, while conformational dynamics about the C-O bond even faster than the C-C dynamics. The faster local dynamics in POE relative to polymethylene is consistent with C-13 NMR spin-lattice relaxation experiments. Conformational transitions showed significant second-neighbor correlation, as was found for polymethylene. This correlation of transitions with C-C neighbors was found to be reduced relative to C-O neighbors. Dielectric relaxation from simulation will also be compared with experiment.

Smith, Grant D.↗
NASA NTRS1994

Equilibrium and Dynamics Properties of Poly(oxyethylene) Melts and Related Poly(alkylethers) from Simulations and Ab Initio Calculations

Molecular dynamics simulations of POE melts have been performed utilizing a potential force field parameterized to reproduce conformer energies and rotational energy barriers in dimethoxyethane as determined from ab initio electronic structure calculations. Chain conformations and dimensions of POE from the simulations were found to be in good agreement with predictions of a rotational isomeric state (RIS) model based upon the ab initio conformational. energies. The melt chains were found to be somewhat extended relative to chains at theta conditions. This effect will be discussed in light of neutron scattering experiments which indicate that POE chains are extended in the melt relative to theta solutions. The conformational characteristics of POE chains will also be compared with those of other poly (alkylethers), namely poly(oxymethylene), poly(oxytrimethylene) and poly(oxytetramethylene). Local conformational dynamics were found to be more rapid than in polymethylene. Calculated C-H vector correlation times were found to be in reasonable agreement with experimental values from C-13 NMR spin-lattice relaxation times. The influence of ionic salts on local conformations and dynamics will also be discussed.

Smith, Grant D.↗
NASA NTRS1995

X-Antenna: A graphical interface for antenna analysis codes

This report serves as the user's manual for the X-Antenna code. X-Antenna is intended to simplify the analysis of antennas by giving the user graphical interfaces in which to enter all relevant antenna and analysis code data. Essentially, X-Antenna creates a Motif interface to the user's antenna analysis codes. A command-file allows new antennas and codes to be added to the application. The menu system and graphical interface screens are created dynamically to conform to the data in the command-file. Antenna data can be saved and retrieved from disk. X-Antenna checks all antenna and code values to ensure they are of the correct type, writes an output file, and runs the appropriate antenna analysis code. Volumetric pattern data may be viewed in 3D space with an external viewer run directly from the application. Currently, X-Antenna includes analysis codes for thin wire antennas (dipoles, loops, and helices), rectangular microstrip antennas, and thin slot antennas.

Goldstein, B. L.↗
NASA NTRS1999

Two Dimensional Dendritic Crystal Growth for Weak Undercooling

We discuss the framework and issues brought forth in the recent work of Kunka, Foster & Tanveer, which incorporates small but nonzero surface energy effects in the nonlinear dynamics of a conformal mapping function z(zeta,t) that maps the upper-half zeta plane into the exterior of a dendrite. In this paper, surface energy effects on the singularities of z(zeta,t) in the lower-half plane were examined, as they move toward the real axis from below. In particular, the dynamics of complex singularities manifests itself in predictions on nature and growth rate of disturbances, as well as of coarsening.

Tanveer, S.↗
NASA NTRS2018

Dynamic Cloud-Based Data Collection System

A schema-less cloud-based distributed data collection system with dynamic validation and comprehensive system status and alerting provided a reconfigurable data collection system to solve evolving incoming data schemas. Successful adaptation of the dynamic validation was useful in conforming to the evolution of incoming data.

dynamic data collection↗
NASA NTRS2018

Gravitational Potential and Non-relativistic Lagrangian in Modified Gravity with Varying G

We have recently shown that the baryonic Tully-Fisher (BTF) and Faber-Jackson (BFJ) relations imply that the gravitational "constant" G in the force law vary with acceleration alpha as 1/alpha . Here we derive the converse from first principles. First we obtain the gravitational potential for all accelerations and we formulate the Lagrangian for the central-force problem. Then action minimization implies the BTF/BFJ relations in the deep MOND limit as well as weak-field Weyl gravity in the Newtonian limit. The results show how we can properly formulate a nonrelativistic conformal theory of modified dynamics that reduces to MOND in its low-acceleration limit and to Weyl gravity in the opposite limit. An unavoidable conclusion is that alpha-0 , the transitional acceleration in modified dynamics, does not have a cosmological origin and it may not even be constant among galaxies and galaxy clusters.

Christodoulou, Dimitris M.↗
NASA NTRS1983

A survey of grid generation techniques in computational fluid dynamics

The use of numerically-generated body-conforming coordinate systems has become well-established in computational fluid dynamics, allowing general codes to be written which can treat boundaries of arbitrary shape. There is now a rapidly increasing interest in the dynamic coupling of the grid with the physical solution so that the grid lines continually move to achieve concentration in regions of strong variation of the physical solution and alignment with shocks, flame fronts, etc. Such adaptive coordinate systems have been developed using a variety of techniques for sensing and reacting to the developing regions of concentration and/or alignment. This paper reviews the techniques and applications of these dynamically adaptive systems and other systems.

Thompson, J. F.↗
NASA NTRS1997

Comparison of Chain Conformation of Poly(vinyl alcohol) in Solutions and Melts from Quantum Chemistry Based Molecular Dynamics Simulations

Confirmations of 2,4-dihydroxypentane (DHP), a model molecule for poly(vinyl alcohol), have been studied by quantum chemistry (QC) calculations and molecular dynamics (MD) simulations. QC calculations at the 6-311G MP2 level show the meso tt conformer to be lowest in energy followed by the racemic tg, due to intramolecular hydrogen bond between the hydroxy groups. The Dreiding force field has been modified to reproduce the QC conformer energies for DHP. MD simulations using this force field have been carried out for DHP molecules in the gas phase, melt, and CHCl3 and water solutions. Extensive intramolecular hydrogen bonding is observed for the gas phase and CHCl3 solution, but not for the melt or aqueous solution, Such a condensed phase effect due to intermolecular interactions results in a drastic change in chain conformations, in agreement with experiments.

Jaffe, Richard↗
NASA NTRS2000

Development of a Enhanced Thermal Barrier for RSRM Nozzle Joints

A carbon fiber rope is being considered as replacement for the RTV thermal barrier that is currently used to protect o-rings in RSRM nozzle joints, Performance requirements include its ability to cool propellant gases filter slag and particulates, and conform to various joint assembly conditions as well as dynamic flight motion. Testing has shown its superior heat resistance, even in oxidative and corrosive environments. Testing has also demonstrated excellent performance of this system in sub-scale motors. Cold flow testing, has demonstrated its ability to conform to motor dynamics. Manufacture and assembly testing have demonstrated the ease of gland machining as well as assembly in a full-scale nozzle.

Bauer, P. H.↗
NASA NTRS1987

Blade-vortex interaction

A conformal transformation and discrete vortex dynamics are used to calculate the interaction of a blade with vortices drifting with the free stream. An unsteady Kutta condition is employed to dictate the strength of vortices shed at the trailing edge. Instantaneous pressure distributions are calculated and compared with earlier experimental and analytical data.

Poling, David R.↗
NASA NTRS2022

Resolving the fine structure in the energy landscapes of repeat proteins

Ankyrin (ANK) repeat proteins are coded by tandem occurrences of patterns with around 33 amino acids. They often mediate protein–protein interactions in a diversity of biological systems. These proteins have an elongated non-globular shape and often display complex folding mechanisms. This work investigates the energy landscape of representative proteins of this class made up of 3, 4 and 6 ANK repeats using the energy-landscape visualisation method (ELViM). By combining biased and unbiased coarse-grained molecular dynamics AWSEM simulations that sample conformations along the folding trajectories with the ELViM structure-based phase space, one finds a three-dimensional representation of the globally funnelled energy surface. In this representation, it is possible to delineate distinct folding pathways. We show that ELViMs can project, in a natural way, the intricacies of the highly dimensional energy landscapes encoded by the highly symmetric ankyrin repeat proteins into useful low-dimensional representations. These projections can discriminate between multiplicities of specific parallel folding mechanisms that otherwise can be hidden in oversimplified depictions.

Murilo N. Sanches↗
NASA NTRS2020

Conformance Monitoring in Air Traffic Control

This report consists of a primer on airspace operations and a survey of previous research in the area of conformance monitoring. The report provides an overview of the topics of airspace operations, air navigation services, and conformance monitoring. Airspace operations are described in terms of missions, aircraft, and environments, including surrounding environment and technical operational environment. Air navigation services support flight crews with information and guidance to complete their flight missions safely and efficiently in a shared, dynamic, and possibly unfamiliar operational environment. Conformance monitoring is an air traffic control function to ensure that aircraft in controlled airspace adhere to assigned clearances. The report also includes a survey of previous research in the area of conformance monitoring.

Wilfredo Torres-Pomales↗
NASA NTRS1994

Performance results of cooperating expert systems in a distributed real-time monitoring system

There are numerous definitions for real-time systems, the most stringent of which involve guaranteeing correct system response within a domain-dependent or situationally defined period of time. For applications such as diagnosis, in which the time required to produce a solution can be non-deterministic, this requirement poses a unique set of challenges in dynamic modification of solution strategy that conforms with maximum possible latencies. However, another definition of real time is relevant in the case of monitoring systems where failure to supply a response in the proper (and often infinitesimal) amount of time allowed does not make the solution less useful (or, in the extreme example of a monitoring system responsible for detecting and deflecting enemy missiles, completely irrelevant). This more casual definition involves responding to data at the same rate at which it is produced, and is more appropriate for monitoring applications with softer real-time constraints, such as interplanetary exploration, which results in massive quantities of data transmitted at the speed of light for a number of hours before it even reaches the monitoring system. The latter definition of real time has been applied to the MARVEL system for automated monitoring and diagnosis of spacecraft telemetry. An early version of this system has been in continuous operational use since it was first deployed in 1989 for the Voyager encounter with Neptune. This system remained under incremental development until 1991 and has been under routine maintenance in operations since then, while continuing to serve as an artificial intelligence (AI) testbed in the laboratory. The system architecture has been designed to facilitate concurrent and cooperative processing by multiple diagnostic expert systems in a hierarchical organization. The diagnostic modules adhere to concepts of data-driven reasoning, constrained but complete nonoverlapping domains, metaknowledge of global consequences of anomalous data, hierarchical reporting of problems that extend beyond a single domain, and shared responsibility for problems that overlap domains. The system enables efficient diagnosis of complex system failures in real-time environments with high data volumes and moderate failure rates, as indicated by extensive performance measurements.

Schwuttke, U. M.↗