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1D-Convolutional Neural Network Architecture for Generalized Time-Segmentation Tasks

Time segmentation of experimental data is a common and often difficult task. Consequently, it is of interest to automate this type of segmentation to reduce manual inputs, which are labor intensive and less consistent. However, simple thresholding algorithms are often insufficiently robust due either to noise or inconsistent data. This paper proposes a simple 1D convolutional neural net (CNN) architecture as a generalized solution for typical time segmentation tasks. The layer architecture, training methods, and methods for simple customization are described as well as the results of application to three separate arc jet data streams: facility condition segmentation, video highlight segmentation, and calorimeter time-series segmentation.

Machine learning↗

1D-Convolutional Neural Network Architecture for Generalized Time-series Segmentation

Time segmentation of experimental data is a common and often difficult task. Consequently, it is of interest to automate this type of segmentation to reduce manual inputs, which are labor intensive and less consistent. However, simple thresholding algorithms are often insufficiently robust due either to noise or inconsistent data. This paper proposes a simple 1D convolutional neural net (CNN) architecture as a generalized solution for typical time segmentation tasks. The layer architecture, training methods, and methods for simple customization will be described as well as the results of application to three separate data streams: facility condition segmentation, video highlight segmentation, and calorimeter time-series segmentation. In all three test cases the 1D-CNN performs better than tailored integral/derivative/thresholding algorithms across a range of signal-to-noise levels.

CNN↗

1D-Convolutional Neural Network Architecture for Generalized Time-series Segmentation

Time segmentation of experimental data is a common and often difficult task. Consequently, it is of interest to automate this type of segmentation to reduce manual inputs, which are labor intensive and less consistent. However, simple thresholding algorithms are often insufficiently robust due either to noise or inconsistent data. This paper proposes a simple 1D convolutional neural net (CNN) architecture as a generalized solution for typical time segmentation tasks. The layer architecture, training methods, and methods for simple customization will be described as well as the results of application to three separate data streams: facility condition segmentation, video highlight segmentation, and calorimeter time-series segmentation. In all three test cases the 1D-CNN performs better than tailored integral/derivative/thresholding algorithms across a range of signal-to-noise levels.

CNN↗

1D-Convolutional Neural Network Architecture for Generalized Time-Segmentation Tasks

Time segmentation of experimental data is a common and often difficult task. Consequently, it is of interest to automate this type of segmentation to reduce manual inputs, which are labor intensive and less consistent. However, simple thresholding algorithms are often insufficiently robust due either to noise or inconsistent data. This paper proposes a simple 1D CNN architecture as a generalized solution for typical time segmentation tasks. The layer architecture, training methods, and methods for simple customization are described as well as the results of application to three separate arc jet data streams: facility condition segmentation, video highlight segmentation, and calorimeter time-series segmentation.

Machine learning↗

1d-Convolutional Neural Network Architecture for Generalized Time-Segmentation Tasks

Time segmentation of experimental data is a common and often difficult task. Consequently, it is of interest to automate this type of segmentation to reduce manual inputs, which are labor intensive and less consistent. However, simple thresholding algorithms are often insufficiently robust due either to noise or inconsistent data. This paper proposes a simple 1D CNN architecture as a generalized solution for typical time segmentation tasks. The layer architecture, training methods, and methods for simple customization are described as well as the results of application to three separate arc jet data streams: facility condition segmentation, video highlight segmentation, and calorimeter time-series segmentation.

Machine learning↗

Automated Cardiovascular Pathology Assessment using Semantic Segmentation and Ensemble Learning

Cardiac magnetic resonance imaging provides high spatial resolution, enabling improved extraction of important functional and morphological features for cardiovascular disease staging. Segmentation of ventricular cavities and myocardium in cardiac cine sequencing provides a basis to quantify cardiac measures such as ejection fraction. A method is presented that curtails the expense and observer bias of manual cardiac evaluation by combining semantic segmentation and disease classification into a fully automatic processing pipeline. The initial processing element consists of a robust dilated convolutional neural network architecture for voxel-wise segmentation of the myocardium and ventricular cavities. The resulting comprehensive volumetric feature matrix captures diagnostic clinical procedure data and is utilized by the final processing element to model a cardiac pathology classifier. Our approach evaluated anonymized cardiac images from a training data set of 100 patients (4 pathology groups, 1 healthy group, 20 patients per group) examined at the University Hospital of Dijon. The top average Dice index scores achieved were 0.940, 0.886, 0.849 for structure segmentation of the left ventricle (LV), myocardium and right ventricle (RV) respectively. A 5-ary pathology classification accuracy of 90% was recorded on an independent test set using the trained model. Performance results demonstrate potential for advanced machine learning methods to deliver accurate, efficient and reproducible cardiac pathological assessment.

Semantic Segmentation↗

Automated Semantic Segmentation for Volumetric Cardiovascular Feature Quantification and Pathology Assessment

We present a pipeline method that curtails the expense and observer bias of manual cardiac evaluation by combining semantic segmentation and disease classification as a fully automatic processing pipeline. The initial element consists of a 2D U-Net convolutional neural network architecture for voxel-wise segmentation of the myocardium and ventricular cavities. The results of the segmentation were used to compute a comprehensive volumetric feature matrix that captured diagnostic clinical procedure data and that was used to model a cardiac pathology classifier.Our approach evaluated anonymized parasternal MRI cardiac images from a database of 100 patients (4 pathology groups, 1 healthy group, 20 patients per group) examined at the University Hospital of Dijon. We achieved top average Dice index scores of 0.939, 0.849, 0.886 for structure segmentation of the left ventricle (LV), right ventricle (RV) and myocardium respectively. A 5-ary pathology classification accuracy of 90% was recorded on an independent test set using our trained model.

Lindsey, Tony↗

Amino Acid Encoding for Deep Learning Applications

Background: The number of applications of deep learning algorithms in bioinformatics is increasing as they usually achieve superior performance over classical approaches, especially, when bigger training datasets are available. In deep learning applications, discrete data, e.g. words or n-grams in language, or amino acids or nucleotides in bioinformatics, are generally represented as a continuous vector through an embedding matrix. Recently, learning this embedding matrix directly from the data as part of the continuous iteration of the model to optimize the target prediction – a process called ‘end-to-end learning’ – has led to state-of-the-art results in many fields. Although usage of embeddings is well described in the bioinformatics literature, the potential of end-to-end learning for single amino acids, as compared to more classical manually-curated encoding strategies, has not been systematically addressed. To this end, we compared classical encoding matrices, namely one-hot, VHSE8 and BLOSUM62, to end-to-end learning of amino acid embeddings for two different prediction tasks using three widely used architectures, namely recurrent neural networks (RNN), convolutional neural networks (CNN), and the hybrid CNN-RNN. Results: By using different deep learning architectures, we show that end-to-end learning is on par with classical encodings for embeddings of the same dimension even when limited training data is available, and might allow for a reduction in the embedding dimension without performance loss, which is critical when deploying the models to devices with limited computational capacities. We found that the embedding dimension is a major factor in controlling the model performance. Surprisingly, we observed that deep learning models are capable of learning from random vectors of appropriate dimension. Conclusion: Our study shows that end-to-end learning is a flexible and powerful method for amino acid encoding. Further, due to the flexibility of deep learning systems, amino acid encoding schemes should be benchmarked against random vectors of the same dimension to disentangle the information content provided by the encoding scheme from the distinguishability effect provided by the scheme.

Deep-learning↗

Amino Acid Encoding for Deep Learning Applications

Background: The number of applications of deep learning algorithms in bioinformatics is increasing as they usually achieve superior performance over classical approaches, especially, when bigger training datasets are available. In deep learning applications, discrete data, e.g. words or n-grams in language, or amino acids or nucleotides in bioinformatics, are generally represented as a continuous vector through an embedding matrix. Recently, learning this embedding matrix directly from the data as part of the continuous iteration of the model to optimize the target prediction – a process called ‘end-to-end learning’ – has led to state-ofthe-art results in many fields. Although usage of embeddings is well described in the bioinformatics literature, the potential of end-to-end learning for single amino acids, as compared to more classical manually-curated encoding strategies, has not been systematically addressed. To this end, we compared classical encoding matrices, namely one-hot, VHSE8 and BLOSUM62, to end-to-end learning of amino acid embeddings for two different prediction tasks using three widely used architectures, namely recurrent neural networks (RNN), convolutional neural networks (CNN), and the hybrid CNN-RNN. Results: By using different deep learning architectures, we show that end-to-end learning is on par with classical encodings for embeddings of the same dimension even when limited training data is available, and might allow for a reduction in the embedding dimension without performance loss, which is critical when deploying the models to devices with limited computational capacities. We found that the embedding dimension is a major factor in controlling the model performance. Surprisingly, we observed that deep learning models are capable of learning from random vectors of appropriate dimension. Conclusion: Our study shows that end-to-end learning is a flexible and powerful method for amino acid encoding. Further, due to the flexibility of deep learning systems, amino acid encoding schemes should be benchmarked against random vectors of the same dimension to disentangle the information content provided by the encoding scheme from the distinguishability effect provided by the scheme.

Hesham ElAbd↗

Flood Mapping Using UAVSAR and Convolutional Neural Networks

We have mapped flooded areas in data collected by the NASA/JPL Uninhabited Aerial Vehicle Synthetic Aperture Radar (UAVSAR) using two convolutional neural network (CNN) image classifier architectures: U-Net and SegNet. Our study area was a region around Houston, TX, USA affected by widespread flooding in 2017 due to Hurricane Harvey. To train and test the classifiers, we manually labelled over 10000 image segments in two flight lines. Both U-Net and SegNet yielded higher accuracy than a previous non-machine learning classifier we used as a baseline. U-Net had slightly higher accuracy than SegNet. The classifiers performed better in areas with more homogeneous land cover. To independently validate the classifier accuracy we used NOAA aerial imagery, with overall accuracy around 80%. Future work includes assessing the classifier robustness in other study areas, assessing the classifier dependence on UAVSAR incidence angle, particularly for open water and bare ground, and collecting more training data, particularly in urban areas. This study demonstrates the potential of CNN image classifiers for mapping flooded areas in airborne polarimetric SAR imagery, and for land cover classification of polarimetric SAR imagery more generally.

Denbina, Michael W↗

Predicting Adverse Events and their Precursors in Aviation Using Multi-Class Multiple-Instance Learning

In recent years, there has been a rapid growth in the application of machine learning techniques that leverage aviation data collected from commercial airline operations to improve safety. Anomaly detection and predictive maintenance have been the main targets for machine learning applications. However, this paper focuses on the identification of precursors, which is a relatively newer application. Precursors are events correlated with adverse events that happen prior to the adverse event itself. Therefore, precursor mining provides many benefits including understanding the reasons behind a safety incident and the ability to identify signatures, which can be tracked throughout a flight to alert the operators of an potential upcoming adverse event. This work proposes using the multiple-instance learning (MIL) framework, a weakly supervised learning task, combined with a carefully designed Multi-Head Convolutional Neural Networks-Recurrent Neural Networks (MHCNN-RNN) architecture to predict different type of adverse events for any given flights and identify their precursors with little to no post-processing.Results obtained show that the MHCNN-RNN is able to accurately forecast high speed and high path angle events during the approach, and that it is also capable of determining the aircraft’s parameters that are correlated to these events. These parameters can be considered precursors to the events.

multiple instance learning↗

Object and Gas Source Detection with Robotic Platforms in Perceptually-Degraded Environments

In exploration-oriented robotic missions for disaster relief in unknown subterranean environments, it is of prime importance for a human supervisor to rapidly gain situational awareness of salient objects within the environment. In this paper we present an automated object detection pipeline that is adaptable to heterogeneous robots with arbitrary sensor configurations. It has been deployed in time-critical scenarios with multiple collaborative robots in a variety of demanding underground environments. For visually observable objects, detections are made in both the visible and thermal spectra using a state-of-the-art machine learning framework for object detection and classification. Our pipeline can be rapidly adapted to a specific task by using a small, structured dataset to fine-tune a pre-trained convolutional neural network (CNN). Relative localization is separated from the CNN for speed of operation. A robust architecture for localization is used with outlier rejection and a hierarchy of fall-back distance measurement methods. Point-source objects such as gas and WiFi hotspots can also be detected, by tracking signal strength over time and presenting an intuitive visualization on a map. Observations of each object types are presented to the operator in ranked confidence order for final evaluation.

Agha-mohammadi, Ali-akbar↗

Towards Surrogate Modeling of Subgrid Turbulent Transport for 3D Radiative Hydrodynamic Simulations of the Quiet Sun

In this work, we investigate the use of deep learn-ing techniques as surrogate models, to enhance the estimationof effects of subgrid turbulent transport for 3D radiatuve hy-drodynamic simulations of the quiet Sun. We develop two dis-tinct 3D Convolutional Neural Networks (3DCNNs) to capturespatio-temporal dependencies in 3D velocity fields, leveragingdifferent activation functions and architectural designs. Thesemodels integrate both averaged velocity vector components andscalar features such as plasma density to enhance predictionaccuracy. Additionally, a Multilayer Perceptron (MLP) modelis employed to approximate complex nonlinear relationships,offering a comparison in performance between convolutionaland fully connected architectures. Logarithmic transformationis applied to the targets to handle heavily skewed data, im-proving model performance. All models are compared againsta physics-based Gradient Model. Results show that the 3DCNNmodels excel at approximating Reynolds stress tensors, makingthem a candidate for assisting in producing reduced resolutionsimulations, and thereby reducing computational overheadwhile maintaining higher accuracy than the baseline. Thesefindings demonstrate the potential of deep learning, particu-larly CNNs, to advance scalable and accurate simulations ofsolar dynamics, offering a promising alternative to traditionalturbulence models.

Heliophysics↗

PERSIANN-Unet: A Global Deep Learning Framework for Near-Real-Time Precipitation Estimation Using Infrared Data

Access to high-quality, high-resolution, near-real-time precipitation data is essential for hydrological and meteorological research and disaster mitigation. Traditional tools such as rain gauges and radar networks, though effective, have limitations, including sparse coverage in remote areas and high operational costs. Satellite data, with its global coverage and high spatial and temporal resolutions, mitigates limitations in coverage. Satellite precipitation products like Hydro Estimator (HE), Integrated Multi-satellitE Retrievals for Global Precipitation Measurement (IMERG), and Precipitation Estimation from Remotely Sensed Information using Artificial Neural Networks (PERSIANN) utilize both geosynchronous thermal infrared (IR) and passive microwave (PMW) data in their operation. PMW sensors offer detailed atmospheric profiles but suffer from higher latency, whereas IR sensors provide lower latency but only capture cloud-top information. Despite this constraint, IR data remains attractive for low-latency precipitation estimation. Recent advances in deep learning, particularly convolutional neural networks (CNNs), have further improved satellite precipitation retrievals. This study introduces PERSIANN-Unet (PUnet or PERSIANN V3), a quasi-global algorithm covering 60°N–60°S that combines IR data, monthly climatology, and the UNet architecture to produce half-hourly precipitation estimates at 0.04° resolution. The product is evaluated against HE, IMERG, and PDIR-Now for 2022–2023. Results show that PUnet closely matches its training target, IMERG V07 Final, at the global scale, and performance is further evaluated against Stage IV as a reference over CONUS. Training PUnet on IMERG (2016–2021) leverages a high-quality, integrated PMW IR-gauge precipitation product while developing an IR-based framework not reliant on PMW availability. By operating on a single global image, PUnet avoids tile partitioning and blending steps, reducing edge discontinuities, and produces more spatially consistent precipitation fields across hemispheres.

Phu Nguyen↗

Machine Vision based Sample-Tube Localization for Mars Sample Return

A potential Mars Sample Return (MSR) architecture is being jointly studied by NASA and ESA. As currently envisioned, the MSR campaign consists of a series of 3 missions: sample cache, fetch and return to Earth. In this paper, we focus on the fetch part of the MSR, and more specifically the problem of autonomously detecting and localizing sample tubes deposited on the Martian surface. Towards this end, we study two machine-vision based approaches: First, a geometrydriven approach based on template matching that uses hardcoded filters and a 3D shape model of the tube; and second, a data-driven approach based on convolutional neural networks (CNNs) and learned features. Furthermore, we present a large benchmark dataset of sample-tube images, collected in representative outdoor environments and annotated with ground truth segmentation masks and locations. The dataset was acquired systematically across different terrain, illumination conditions and dust-coverage; and benchmarking was performed to study the feasibility of each approach, their relative strengths and weaknesses, and robustness in the presence of adverse environmental conditions.

Detry, R.↗

Data fusion with artificial neural networks (ANN) for classification of earth surface from microwave satellite measurements

A data fusion system with artificial neural networks (ANN) is used for fast and accurate classification of five earth surface conditions and surface changes, based on seven SSMI multichannel microwave satellite measurements. The measurements include brightness temperatures at 19, 22, 37, and 85 GHz at both H and V polarizations (only V at 22 GHz). The seven channel measurements are processed through a convolution computation such that all measurements are located at same grid. Five surface classes including non-scattering surface, precipitation over land, over ocean, snow, and desert are identified from ground-truth observations. The system processes sensory data in three consecutive phases: (1) pre-processing to extract feature vectors and enhance separability among detected classes; (2) preliminary classification of Earth surface patterns using two separate and parallely acting classifiers: back-propagation neural network and binary decision tree classifiers; and (3) data fusion of results from preliminary classifiers to obtain the optimal performance in overall classification. Both the binary decision tree classifier and the fusion processing centers are implemented by neural network architectures. The fusion system configuration is a hierarchical neural network architecture, in which each functional neural net will handle different processing phases in a pipelined fashion. There is a total of around 13,500 samples for this analysis, of which 4 percent are used as the training set and 96 percent as the testing set. After training, this classification system is able to bring up the detection accuracy to 94 percent compared with 88 percent for back-propagation artificial neural networks and 80 percent for binary decision tree classifiers. The neural network data fusion classification is currently under progress to be integrated in an image processing system at NOAA and to be implemented in a prototype of a massively parallel and dynamically reconfigurable Modular Neural Ring (MNR).

Lure, Y. M. Fleming↗

Proactive Wildfire Management: A Remote Sensing and Multimodal CNN-MLP Architecture for Ignition Risk Forecasting

As the frequency and intensity of wildfires increase, with fire seasons now starting earlier and ending later than they have over the past decades, current monitoring systems, such as lookout towers and satellites, are hindered by cloud cover, low-resolution imagery, and static data gaps that fail to track vegetation moisture levels fast enough to catch rapid pre-ignition changes. This report proposes a Machine Learning-enabled Wildfire Ignition Prediction framework that combines satellite monitoring with dynamic and high-resolution remote sensing from Unmanned Aerial Vehicle (UAV) swarms. The method would use multispectral and thermal data from the Landsat program to create a baseline for vegetation health, calculating a two-band Enhanced Vegetation Index (EVI2) and the moisture content of the vegetation. These inputs will later be fused with microscale UAV weather data, including thermal hotspots found through thick canopies, hyperspectral chemical signatures of pre-visual combustion, and local weather streams. The multispectral satellite, multispectral Light Detection and Ranging (LiDAR), and thermal data would then be processed through a Convolutional Neural Network (CNN), alongside a Multilayer Perceptron (MLP) for the micro-weather telemetry. The outputs of these networks would be fused into a single feature representation and passed through a final prediction network to generate real-time ignition risk scores and hotspot alerts. Model performance would be assessed using standard classification metrics, including a Receiver Operating Characteristic - Area Under the Curve (ROC AUC) and F1 score. This system would allow first responders to identify high-risk zones and intervene before ignition occurs, improving emergency response time compared to current approaches.

machine learning↗

Sensor Fault Detection in Smart Extraterrestrial Habitats Using Unsupervised Learning

Various types of sensors are needed to monitor the health state of smart deep-space habitats. However, measured data can be affected by sensor faults, which influence the health management system and consequently the decision-making. In this paper, an unsupervised learning approach based on convolutional autoencoders (CAEs) is developed to detect anomalies in temperature and pressure sensors. The proposed method is systematically investigated using a habitat simulator (HabSim). Several illustrative examples are demonstrated in the nominal and hazardous states of the habitat, including micrometeorite impact and fire scenarios. The performance of the proposed method using CAEs is compared with that of existing methods using auto-associative neural networks (AANNs) and variational autoencoders. This comparison is based on typical evaluation metrics, including precision, recall, F1 score, training time, and testing time. The effect of temperature–pressure coupling on the detection performance of CAEs and AANNs is explored by training different data-driven models, including one with temperature sensors, one with pressure sensors, and one with both temperature and pressure sensors. The effect of the number of faulty sensors on the performance of CAEs is studied, as with an increase in the number of faulty sensors, redundant information among the sensors is reduced. The capability of CAEs to change the number of sensors without redesigning the network architecture and retraining the neural network is investigated and demonstrated. The capabilities and limitations of the proposed solution are discussed.

Zixin Wang↗