Lidar Wind Cube / Raw Data
This dataset contains raw data from DOE Buoy 140 deployed during WFIP3. Wind Cube
17 WIND ENERGY↗
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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An iterative method to deblend AGN-Host contributions for Integral Field spectroscopic observations
ABSTRACT We present a new iterative deblending method to separate the host galaxy (HG) and their Active Galactic Nuclei (AGNs) emission with the use of Integral Field spectroscopic (IFS) data. The method decomposes the resolved HG emission from the unresolved AGN emission by modelling the two-dimensional surface brightness (SB) profile of the point-spread function (PSF) and the two-dimensional SB HG continuum simultaneously per each monochromatic slide. Our method does not require any prior information about the observed SB profile or a detailed fitting of the PSF, making it ideal for the automatic analysis of large galaxy samples. In this work, we test the quality of our method, its advantages, and its disadvantages. We test our method by using a set of IFS mock data cubes to quantify the reliability of our deblending process and further compare our method with the qdblend3d analysis tool. Furthermore, we applied our method to three data cubes selected from the MaNGA survey according to the dominance of either its HG or its AGN. We show that our deblending method is capable of disengaging the bright, non-resolved AGN emission from the HG continuum and its narrow emission lines. However, the decoupling depends on how well the IFS spatially resolves the PSF, and on the relative flux intensity of the HG-AGN. Therefore, the method is ideal for disentangling the bright-flux contribution from AGN-dominated spectra.
Ibarra-Medel, H. (ORCID:0000000297906313)↗
Lidar Wind Cube / Processed Data
This dataset contains processed and standardized data from DOE Buoy 140 deployed during WFIP3.
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A Workflow for Accelerating Multimodal Data Collection for Electrodeposited Films
Abstract Future machine learning strategies for materials process optimization will likely replace human capital-intensive artisan research with autonomous and/or accelerated approaches. Such automation enables accelerated multimodal characterization that simultaneously minimizes human errors, lowers costs, enhances statistical sampling, and allows scientists to allocate their time to critical thinking instead of repetitive manual tasks. Previous acceleration efforts to synthesize and evaluate materials have often employed elaborate robotic self-driving laboratories or used specialized strategies that are difficult to generalize. Herein we describe an implemented workflow for accelerating the multimodal characterization of a combinatorial set of 915 electroplated Ni and Ni–Fe thin films resulting in a data cube with over 160,000 individual data files. Our acceleration strategies do not require manufacturing-scale resources and are thus amenable to typical materials research facilities in academic, government, or commercial laboratories. The workflow demonstrated the acceleration of six characterization modalities: optical microscopy, laser profilometry, X-ray diffraction, X-ray fluorescence, nanoindentation, and tribological (friction and wear) testing, each with speedup factors ranging from 13–46x. In addition, automated data upload to a repository using FAIR data principles was accelerated by 64x.
36 MATERIALS SCIENCE↗
FAIRLinked: Data FAIRification Tools for Materials Data Science
FAIRLinked is a software package created to support the FAIRification of materials science data, ensuring proper alignment with FAIR principles: Findable, Accessible, Interoperable, and Reusable. It is built to be compatible with MDS-Onto, an ontology designed to capture the semantics of various types of materials data, enabling integration and sharing across different research workflows. The package is subdivided into three subpackages: InterfaceMDS, RDFTableConversion, and QBWorkflow. The first subpackage, InterfaceMDS allows users to search for terms using either string search or various filters, explore different domains and subdomains, and add terms to MDS-Onto. RDFTableConversion is used for serialization and deserialization of data from CSV into JSONLDs and vice versa in a way that captures the semantics of the data using MDS-Onto. Lastly, QBWorkflow is a serialization and deserialization workflow that incorporates RDF Data Cube vocabulary, useful for working with multidimensional datasets. By offering these packages, FAIRLinked lowers the barrier of creating FAIR, machine-actionable data for researchers in the materials science community.
FAIR↗
Gulf of Mexico Miocene CO2 Site Characterization Mega Transect
The project Gulf of Mexico Miocene CO2 Site Characterization Mega Transect is one of 9 site characterization projects that were implemented as part of ARRA (American Recovery and Reinvestment Act). Data from this project was used to improve resolution of data in NATCARB in the area of study. Data related to this study has already been incorporated in NATCARB Atlas. The University of Texas at Austin study focused on (1) collecting high-resolution, 3-D (HR3D) seismic datasets of the shallow geologic section to evaluate the capacity of potential reservoirs and the sealing capacity of the confining system, and (2) producing a regional CO2 atlas of Miocene age units of the upper Texas coast submerged lands (southeast Texas). The goal of the study was to evaluate the capability of the Miocene age geologic section of Texas submerged lands to permanently store large volumes of anthropogenic CO2. The geographic locations of three HR3D, “P-Cable” seismic surveys collected in the near-shore waters of southeast Texas offers a vertical and horizontal view (data “cube”) example from the second survey. The dataset's high quality allowed for defining recognizable geologic morphologies (shapes) and possible fluid content, which are important for determining an area’s prospects for geologic storage. The regional CO2 atlas of Miocene age units highlights several topics, including: (1) a regional analyses of petroleum systems as analogs for CO2 storage; (2) petrography, petrology, and extent of confining systems of the Miocene section; (3) static capacity estimate; and (4) examples of characterization methodologies of prospect areas. The HR3D datasets and regional analyses within the CO2 atlas of the offshore Texas Miocene provide a sound basis for a future generation of specific CO2 prospects in the study area.
.las↗
LLNL Wind Cube V2 Lidar / Raw Data
This dataset contains vertical profiling lidar datafrom AWAKEN site A1. This is the WindCube v2 lidar. The Windcube v2 replaced the ZX300 at this location at the end of March 2023.
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Estimation and Visualization of Isosurface Uncertainty from Linear and High-Order Interpolation Methods
Isosurface visualization is fundamental for exploring and analyzing 3D volumetric data. Marching cubes (MC) algorithms with linear interpolation are commonly used for isosurface extraction and visualization. Although linear interpolation is easy to implement, it has limitations when the underlying data is complex and high-order, which is the case for most real-world data. Linear interpolation can output vertices at the wrong location. Its inability to deal with sharp features and features smaller than grid cells can lead to an incorrect isosurface with holes and broken pieces. Despite these limitations, isosurface visualizations typically do not include insight into the spatial location and the magnitude of these errors. We utilize high-order interpolation methods with MC algorithms and interactive visualization to highlight these uncertainties. Our visualization tool helps identify the regions of high interpolation errors. It also allows users to query local areas for details and compare the differences between isosurfaces from different interpolation methods. In addition, we employ high-order methods to identify and reconstruct possible features that linear methods cannot detect. We showcase how our visualization tool helps explore and understand the extracted isosurface errors through synthetic and real-world data.
Ouermi, Timbwaoga↗
Data-Driven Computation of Probabilistic Marching Cubes for Efficient Visualization of Level-Set Uncertainty
Uncertainty visualization is an important emerging research area. Being able to visualize data uncertainty can help scientists improve trust in analysis and decision-making. However, visualizing uncertainty can add computational overhead, which can hinder the efficiency of analysis. In this paper, we propose novel data-driven techniques to reduce the computational requirements of the probabilistic marching cubes (PMC) algorithm. PMC is an uncertainty visualization technique that studies how uncertainty in data affects level-set positions. However, the algorithm relies on expensive Monte Carlo (MC) sampling for the multivariate Gaussian uncertainty model because no closed-form solution exists for the integration of multivariate Gaussian. In this work, we propose the eigenvalue decomposition and adaptive probability model techniques that reduce the amount of MC sampling in the original PMC algorithm and hence speed up the computations. Our proposed methods produce results that show negligible differences compared with the original PMC algorithm demonstrated through metrics, including root mean squared error, maximum error, and difference images. We demonstrate the performance and accuracy evaluations of our data-driven methods through experiments on synthetic and real datasets.
Athawale, Tushar↗
MAGIC: M arching Cubes Isosurface Uncertainty Visualization for G auss i an Uncertain Data With Spatial C orrelation
Here, in this paper, we study the propagation of data uncertainty through the marching cubes algorithm for isosurface visualization for correlated uncertain data. Consideration of correlation has been shown paramount for avoiding errors in uncertainty quantification and visualization in multiple prior studies. Although the problem of isosurface uncertainty with spatial data correlation has been previously addressed, there are two major limitations to prior treatments. First, there are no analytical formulations for uncertainty quantification of isosurfaces when the data uncertainty is characterized by a Gaussian distribution with spatial correlation. Second, as a consequence of the lack of analytical formulations,existing techniques resort to a Monte Carlo sampling approach, which is expensive and difficult to integrate into visualization tools. To address these limitations, we present a closed-form framework to efficiently derive uncertainty in marching cubes level-sets for Gaussian uncertain data with spatial correlation (MAGIC). To derive closed-form solutions, we leverage the Hinkley's derivation on the ratio of Gaussian distributions. With our analytical framework, we achieve a significant speed-up and enhanced accuracy of uncertainty quantification over classical Monte Carlo methods. We further accelerate our analytical solutions using many-core processors to achieve speed-ups up to 585× and integrability with production visualization tools for broader impact. We demonstrate the effectiveness of our correlation-aware uncertainty framework through experiments on meteorology, urban flow, and astrophysics simulation datasets.
Gaussian↗
Characterization of ORNL PSD ASIC
The performance of the ORNL ASIC and its readout system was tested with pixelated organic scintillators. We use a pixelated trans-Stilbene scintillator array from Inrad Optics and a pixelated organic glass scintillator array developed at Sandia National Laboratories to characterize the energy and timing resolutions and the pulse-shape discrimination (PSD) figure-of-merit (FoM). The results are compared to previous work in which the same metrics were measured on waveforms digitized at 250 MHz with 14-bit resolution. We found that the PSD FoM at 340 keVee of the ASIC configuration compared to waveform data varied with the scintillator type. We measured a PSD FoM of 1.12 ± 0.14 with the ASIC configuration versus 1.39 ± 0.23 with waveform data using the trans-Stilbene array. We measured a PSD FoM of 0.52 ± 0.18 with the ASIC configuration versus 1.25 ± 0.19 with waveform data using the the organic glass scintillator array. The coincidence timing resolution was measured using two 6x6x6 mm 3 cubes of trans-Stilbene. It was measured to be 805 ± 9 ps with the ASIC configuration versus 300 ps on average with waveform data.
42 ENGINEERING↗
Nucleation rate controlled grain boundary and lattice creep
Nucleation versus diffusion rate-limited bicrystal and single crystal creep exhibit different scaling dependencies that enable the mechanisms to be isolated when measured as a function of sample size. It has recently been suggested that nucleation rate-limited kinetic models generally describe the non-Newtonian portion of the creep response well, but more direct evidence is required. This work analyzes the grain boundary creep response of UO 2 , a pyrochlore high entropy oxide, silver, and palladium, along with the lattice creep of silver using small-scale in situ loading in the transmission electron microscope. At small sizes, each system exhibits scale dependence associated with nucleation rate-limited kinetics. Fits of the data produce activation volumes on the order of a few Burgers vectors cubed with positive temperature coefficients as expected for nucleation kinetics. The activation enthalpies fall in the range of about 0.4 eV to 1.7 eV, being lower for the metals and higher for the oxides.
36 MATERIALS SCIENCE↗
HostSub_GP: Precise Galaxy Background Subtraction in Transient Long-slit Spectroscopy with Gaussian Processes
We present a novel host galaxy subtraction technique in long-slit spectroscopy for extragalactic transients. Unlike classic methods which generally estimate the background using simple interpolation of local galaxy flux in the 2D spectrum, our approach leverages multi-band archival images of the host galaxies to model the background emission from the galaxy in the 2D spectrum. Such imaging encodes the wavelength-dependent galaxy profile along the slit, and is readily accessible through wide-field imaging surveys. We construct a smooth prior for the 2D galaxy profile with a Gaussian process (GP) based on these reference images, and use another GP to model the correlated deviations from the prior in the observed spectrum. This enables accurate inference of the galaxy flux blended with the transient. On synthetic long-slit data of a spiral galaxy extracted from a Multi Unit Spectroscopic Explorer hyper-spectral cube, the GP method remains robust as long as the host galaxy is spatially resolved and consistently outperforms classic methods. We apply the method to archival Keck spectra of two real transients, SN 2019eix and AT 2019qiz, to further demonstrate how the method uniquely recovers weak spectral features amid strong galaxy contamination, enabling refined constraints on the properties of both transients. We have released the software implementation, HostSub_GP, a scalable toolkit that leverages JAX, with an MIT license.
79 ASTRONOMY AND ASTROPHYSICS↗
Automatic Point Cloud Building Envelope Segmentation (AutoCuBES)
The Auto-CuBES algorithm is based on unsupervised machine learning that automatically labels 3D point cloud data and reduces the time spent in manual segmentation. The algorithm can process high-resolution point clouds and generate a wire-frame building envelope model with a small set of calibration parameters. The algorithm inputs a 3D point cloud generated by commonly available surveying equipment and outputs a wire-frame model of the building envelope. Unsupervised machine learning methods were used to identify facades, windows, and doors while minimizing the number of calibration parameters.
Puente, BryanMaldonado↗
Chloroform Fumigation Extraction for Microbial Biomass and Dissolved Organic Carbon from SPRUCE, Marcell Experimental Forest, Minnesota, 2021, 2022, and 2024
This data set provides the results for chloroform fumigation extraction (CFE) of peat samples collected from ambient and experimental plots in the Spruce and Peatland Responses Under Environmental Change (SPRUCE) Experiment site in June and August of 2021, June of 2022, and June, August, and October of 2024. The SPRUCE Experiment site is in the Marcell Experimental Forest in northern Minnesota, USA. The data set includes values for microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), dissolved organic carbon (DOC), dissolved nitrogen (DN), moisture content (MC, available for 2021 and 2022 only) and gravimetric water content (GWC) at 11 depth increments of two-meter peat cores taken from 12 sampling sites at SPRUCE (10 temperature treatment enclosures, 2 ambient temperature treatment enclosures). The sample analysis followed standard methods. The samples were analyzed using a Shimadzu Total Organic Carbon/Nitrogen (TOC/N) analyzer (TOC-V and TOC-L; 2021-2022) or an Elementar vario TOC Cube (2024), liquid catalytic oxidation combustion analyzers for total carbon and nitrogen analysis. This dataset contains two data files in comma separate (.csv) format. Additional metadata are provided: two data dictionaries and a file-level metadata file in comma separate (.csv) format and a user guide in PDF (*.pdf) format.
dissolved nitrogen↗
High strain-rate strength response of single crystal tantalum through in-situ hole closure imaging experiments
The properties of crystalline materials often depend on directionality and operating conditions. Specifically, the strength of materials can depend anisotropically on crystal direction and the loading condition. To probe these effects, a preliminary series of high strain-rate (> 105/s) strength plate-impact hole closure experiments were performed on high purity single crystal Tantalum cubes. The orientation of the single crystals with respect to impact/loading were varied to provide data to inform crystal plasticity modeling efforts. The experiments consist of in-situ high-resolution X-ray radiographic imaging of the hole collapse under dynamic compression conditions to infer the material strength via its resistance to closure at increasing levels of plastic strain. The experiments are compared against hydrocode simulation predictions. Here, a comparison with simple elastic perfectly plastic strength model predictions is presented to elucidate the response of the different crystal orientations at high strain-rate and large plastic strains.
36 MATERIALS SCIENCE↗
Gauging nexus between topological and fracton phases
Coupled layer constructions are a valuable tool for capturing the universal properties of certain interacting quantum phases of matter in terms of the simpler data that characterizes the underlying layers. In the study of fracton phases, the X-Cube model in 3+1D can be realized via such a construction by starting with a stack of 2+1D Toric Codes and turning on a coupling which condenses a composite "particle-string" object. In a recent work [Phys. Rev. B 112, 125124 (2025)], we have demonstrated that in fact, the particle-string can be viewed as a symmetry defect of a topological 1-form symmetry. In this paper, we study the result of gauging this symmetry in depth. We unveil a rich gauging web relating the X-Cube model to symmetry protected topological (SPT) phases protected by a mix of subsystem and higher-form symmetries, subsystem symmetry fractionalization in the 3+1D Toric Code, and non-trivial extensions of topological symmetries by subsystem symmetries. Here, our work emphasizes the importance of topological symmetries in non-topological, geometric phases of matter.
Anyons↗
h5bench: A unified benchmark suite for evaluating HDF5 I/O performance on pre‐exascale platforms
Summary Parallel I/O is a critical technique for moving data between compute and storage subsystems of supercomputers. With massive amounts of data produced or consumed by compute nodes, high‐performant parallel I/O is essential. I/O benchmarks play an important role in this process; however, there is a scarcity of I/O benchmarks representative of current workloads on HPC systems. Toward creating representative I/O kernels from real‐world applications, we have created h5bench , a set of I/O kernels that exercise hierarchical data format version 5 (HDF5) I/O on parallel file systems in numerous dimensions. Our focus on HDF5 is due to the parallel I/O library's heavy usage in various scientific applications running on supercomputing systems. The various tests benchmarked in the h5bench suite include I/O operations (read and write), data locality (arrays of basic data types and arrays of structures), array dimensionality (one‐dimensional arrays, two‐dimensional meshes, three‐dimensional cubes), I/O modes (synchronous and asynchronous). In this paper, we present the observed performance of h5bench executed along several of these dimensions on existing supercomputers (Cori and Summit) and pre‐exascale platforms (Perlmutter, Theta, and Polaris). h5bench measurements can be used to identify performance bottlenecks and their root causes and evaluate I/O optimizations. As the I/O patterns of h5bench are diverse and capture the I/O behaviors of various HPC applications, this study will be helpful to the broader supercomputing and I/O community.
97 MATHEMATICS AND COMPUTING↗