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Results for “Decarboxylation”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Catalase protects against nonenzymatic decarboxylations during photorespiration in Arabidopsis thaliana

Abstract Photorespiration recovers carbon that would be otherwise lost following the oxygenation reaction of rubisco and production of glycolate. Photorespiration is essential in plants and recycles glycolate into usable metabolic products through reactions spanning the chloroplast, mitochondrion, and peroxisome. Catalase in peroxisomes plays an important role in this process by disproportionating H 2 O 2 resulting from glycolate oxidation into O 2 and water. We hypothesize that catalase in the peroxisome also protects against nonenzymatic decarboxylations between hydrogen peroxide and photorespiratory intermediates (glyoxylate and/or hydroxypyruvate). We test this hypothesis by detailed gas exchange and biochemical analysis of Arabidopsis thaliana mutants lacking peroxisomal catalase. Our results strongly support this hypothesis, with catalase mutants showing gas exchange evidence for an increased stoichiometry of CO 2 release from photorespiration, specifically an increase in the CO 2 compensation point, a photorespiratory‐dependent decrease in the quantum efficiency of CO 2 assimilation, increase in the 12 CO 2 released in a 13 CO 2 background, and an increase in the postillumination CO 2 burst. Further metabolic evidence suggests this excess CO 2 release occurred via the nonenzymatic decarboxylation of hydroxypyruvate. Specifically, the catalase mutant showed an accumulation of photorespiratory intermediates during a transient increase in rubisco oxygenation consistent with this hypothesis. Additionally, end products of alternative hypotheses explaining this excess release were similar between wild type and catalase mutants. Furthermore, the calculated rate of hydroxypyruvate decarboxylation in catalase mutant is much higher than that of glyoxylate decarboxylation. This work provides evidence that these nonenzymatic decarboxylation reactions, predominately hydroxypyruvate decarboxylation, can occur in vivo when photorespiratory metabolism is genetically disrupted.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

On the Mechanism of Catalytic Decarboxylation of Carboxylic Acids on Carbon-Supported Palladium Hydride

The high chemical stability of aliphatic carboxylic acid makes catalytic decarboxylation at low temperatures challenging. We show that arylaliphatic acids (Ar-CnH2n-COOH, n = 1) decarboxylate on carbon-supported Pd nanoparticles (Pd/C) at 90 °C with 100% selectivity. In situ XANES during decarboxylation of preadsorbed substrates indicates that the active phase is a-phase palladium hydride (a-PdHx). The reaction rate is enhanced by one order of magnitude when hydrogen is preadsorbed. Tracing deuterium labeling positions, it is concluded that carboxylic acid (Ar-CnH2n-COOH) undergoes an a-C-H bond dissociation on the Pd surface to the Ar-(CH2)n-1-CH*-COO* intermediate in the first step, followed by the C-COO scission, and finally, Ar-(CH2)n-1- CH* reacts with two sorbed H to produce Ar-(CH2)n-1-CH3. The high rates are related to the concentration of hydride present on the catalyst particles to complete the catalytic cycle in a Mars-van Krevelen-type mechanism and the rate of H/D exchange at the a-C- H position.

Pd/C catalyst, palladium hydride, arylaliphatic ca↗
DOE OSTI2025

Decarboxylation-Triggered Polymer Deconstruction

Decarboxylation is an emerging strategy to remediate plastic waste. Herein, we discuss recent advances that leverage activated ester or carboxylic acid decarboxylation to deconstruct polymers. Specifically, we address state-of-the-art strategies that rely on thermolytic, photolytic, or electrolytic stimuli to induce decarboxylation. Throughout, we highlight the key advances of each report and provide our insight on future directions for the field. We anticipate that continued developments in the field will lead to strategies for the controlled deconstruction of versatile polymeric materials.

chemical recycling↗
DOE OSTI2022

Electrocatalytic decarboxylation of carboxylic acids over RuO 2 and Pt nanoparticles

Here, we report electrocatalytic decarboxylation (ECDX) of valeric acid into paraffins, olefins, and alcohols via (non-)Kolbe electrolysis on electrodes with RuO 2 and Pt nanoparticles (NPs) as a greener alternative to thermocatalytic decarboxylation. The turnover frequency of ECDX increases, while the specific activity peaks as RuO 2 NP size increases. These opposing trends make the particle size of ∼ 12 nm the optimum size for ECDX on RuO 2 . Bulk Pt was active for ECDX, while Pt NPs were only active for the oxygen evolution reaction under our conditions. ECDX current efficiency remained constant in the studied potential range on RuO 2 NPs. Esterification was the favored reaction at 2.5 V vs. RHE; however, Kolbe electrolysis was the favored reaction at the expense of the esterification at 4.5 V vs. RHE. This work highlights the performance of nanostructured materials as an alternative to bulk materials as anodes for oxidative upgrading of carboxylic acids.

Kolbe electrolysis↗
DOE OSTI2022

A Unified Approach to Decarboxylative Halogenation of (Hetero)aryl Carboxylic Acids

Aryl halides are a fundamental motif in synthetic chemistry, playing a critical role in metal-mediated cross-coupling reactions and serving as important scaffolds in drug discovery. Although thermal decarboxylative functionalization of aryl carboxylic acids has been extensively explored, the scope of existing halodecarboxylation methods remains limited, and there currently exists no unified strategy that provides access to any type of aryl halide from an aryl carboxylic acid precursor. Herein, we report a general catalytic method for direct decarboxylative halogenation of (hetero)aryl carboxylic acids via ligand-to-metal charge transfer. This strategy accommodates an exceptionally broad scope of substrates. Here, we leverage an aryl radical intermediate toward divergent functionalization pathways: (1) atom transfer to access bromo- or iodo(hetero)arenes or (2) radical capture by copper and subsequent reductive elimination to generate chloro- or fluoro(hetero)arenes. The proposed ligand-to-metal charge transfer mechanism is supported through an array of spectroscopic studies.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

The thermally induced decarboxylation mechanism of a mixed-oxidation state carboxylate-based iron metal–organic framework

Investigations into a thermally generated decarboxylation mechanism for metal site activation and the generation of mesopores in a carboxylate iron-based MOF, PCN-250, have been conducted. PCN-250 exhibits an interesting oxidation state change during thermal treatment under inert atmospheres or vacuum conditions, transitioning from an Fe(III)3 cluster to a Fe(II)Fe(III) 2 cluster. To probe this redox event and discern a mechanism of activation, a combination of thermogravimetric analysis, gas sorption, scanning electron microscopy, 57 Fe Mössbauer spectroscopy, gas chromatography-mass spectrometry, and X-ray diffraction studies were conducted. The results suggest that the iron-site activation occurs due to ligand decarboxylation above 200 °C. This is also consistent with the generation of a missing cluster mesoporous defect in the framework. The resulting mesoporous PCN-250 maintains high thermal stability, preserving crystallinity after multiple consecutive high-temperature regeneration cycles. Additionally, the thermally reduced PCN-250 shows improvements in the total uptake capacity of methane and CO 2 .

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Copper(ii)-photocatalyzed decarboxylative oxygenation of carboxylic acids

Showcasing the concept of light-induced homolysis for the generation of radicals, the Cu II -photocatalyzed decarboxylative oxygenation of carboxylic acids with molecular oxygen as the terminal oxidant is described. Here, two Cu II -carboxylate complexes with different coordination geometries were synthesized and characterized by X-ray analysis, correlating their structure with their ability to initiate light-induced decarboxylations.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2026

Tunable Conversion of Poly(Acrylic Acid) to Vinyl Methyl Ether Copolymers via Electrochemical Decarboxylation

Recognizing the potential of polymer-to-polymer transformations for plastics valorization, a new electrochemical strategy for the decarboxylative functionalization of polyacrylates has been developed. In contrast to most electrochemical approaches to plastic waste valorization that use small-molecule mediators or only form deconstruction products, this report describes one of the first direct electrochemical redox upconversions of a commodity polymer and involves activation of poly(acrylic acid), a material commonly found in disposable diapers and other personal hygiene products. Via electrochemical decarboxylation, poly(acrylic acid) is converted to methyl ether-containing copolymers. Although methods to prepare the 1:1 regularly alternating poly(vinyl methyl ether-alt-maleic anhydride) are known, routes to generate copolymers with variable levels of vinyl methyl ether and acrylate moieties are unknown, but such polymers may have utility in similar applications, such as dentifrices. Tunable conversions with up to 62 mol% vinyl methyl ether content were achieved via controlled-current electrolyses at >100 mA. This approach enables efficient access to copolymers with broad range of comonomer content from a common waste polymer starting material.

Dauzvardis, Fabian [University of Delaware, Newark↗
DOE OSTI2019

Decarboxylation and electrophilic substitution in 3-tert-butyl-4-oxopyrazolo[5,1-c][1,2,4]triazines

Reactivity of 7-R-3-tert-butyl-4-oxo-4,6-dihydropyrazolo[5,1-c][1,2,4]triazine-8-carboxylic acids (R = NH{sub 2}, N{sub 3}, H) and products of their decarboxylation towards different electrophilic agents (chloroacetone, Boc{sub 2}O/NaN{sub 3}, DMF/POCl{sub 3}, TMSBr, N-halosuccinimides, and HNO{sub 2}) was studied. A selective synthesis of new C(7),C(8)-functionalized and N(1)-tert-butyloxycarbonyl-substituted 4-oxopyrazolo[5,1-c][1,2,4]triazines was performed. The structures of the synthesized compounds were confirmed by IR and NMR spectroscopy, high resolution mass spectrometry and single crystal X-ray diffraction analysis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2018

Effects of Cashew Nut Shell Liquid and Its Decarboxylated Form on the Properties of Natural Rubber

Effects of addition of raw cashew nut shell liquid (CNSL) or its decarboxylated form (D-CNSL or cardanol) on curing characteristics, physical properties and temperature scanned stress relaxation were investigated. The study revealed that the CNSL containing high anacardic acid concentration acts as an acid activator and strongly affects curing behavior of NR compounds. The effective curing rate and curing efficiency, i.e., torque difference, crosslink density, and activation energy for curing, clearly increased with 2–5 phr of CNSL. Furthermore, physical properties and thermal stability also improved. However, when the acidity was removed by forming D-CNSL, the effects were totally different from those of the CNSL. The D-CNSL behaves like a plasticizer improving chain flexibility and might show dilution effects if used at a high content in the compound formulation. These effects are clearly seen in decreased curing rate and curing efficiency, together with slight losses of tensile properties, tear strength, and thermal stability, with D-CNSL addition.

36 MATERIALS SCIENCE↗
DOE OSTI2023

Common Photo-oxidative Decarboxylation Mechanism in Iron Hydroxy Carboxylate Complexes

Photochemical oxidation of dissolved organic matter is a crucial component of carbon cycling in surface waters. Photo-oxidation of iron(III)-carboxylate complexes is of particular interest because complexation with iron(III) can sensitize this functional group to photodecarboxylation. Further, the photo-oxidation mechanism of ferrioxalate has been extensively characterized, but it is unclear whether the mechanism or timing is similar for other more complex carboxylates. In this study, we use time-resolved infrared spectroscopy to demonstrate that Fe(III)-citrate, an aliphatic carboxylate, and Fe(III)-salicylate, an aromatic carboxylate, follow the same photo-oxidation kinetics as ferrioxalate. Hence the data suggest a common mechanism for decarboxylation of iron hydroxy carbonates. Differences in the CO 2 yield within 50 ps are qualitatively similar to the long-time-scale quantum yield for Fe(II) production.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Decarboxylation of the Catalytic Lysine Residue by the C5α-Methyl-Substituted Carbapenem NA-1-157 Leads to Potent Inhibition of the OXA-58 Carbapenemase

Antibiotic resistance in bacteria is a major global health concern. The wide spread of carbapenemases, bacterial enzymes that degrade the last-resort carbapenem antibiotics, is responsible for multidrug resistance in bacterial pathogens and has further significantly exacerbated this problem. Acinetobacter baumannii is one of the leading nosocomial pathogens due to the acquisition and wide dissemination of carbapenem-hydrolyzing class D β-lactamases, which have dramatically diminished available therapeutic options. Thus, new antibiotics that are active against multidrug-resistantA. baumannii and carbapenemase inhibitors are urgently needed. Here we report characterization of the interaction of the C5α-methyl-substituted carbapenem NA-1-157 with one of the clinically important class D carbapenemases, OXA-58. Antibiotic susceptibility testing shows that the compound is more potent than commercial carbapenems against OXA-58-producingA. baumannii, with a clinically sensitive MIC value of 1 μg/mL. Kinetic studies demonstrate that NA-1-157 is a very poor substrate of the enzyme due mainly to a significantly reduced deacylation rate. Mass spectrometry analysis shows that inhibition of OXA-58 by NA-1-157 proceeds through both the classical acyl-enzyme intermediate and a reversible covalent species. Time-resolved X-ray crystallographic studies reveal that upon acylation of the enzyme, the compound causes progressive decarboxylation of the catalytic lysine residue, thus severely impairing deacylation. Overall, this study demonstrates that the carbapenem NA-1-157 is highly resistant to degradation by the OXA-58 carbapenemase.

Acinetobactor↗
DOE OSTI2019

Substrate-Triggered Formation of a Peroxo-Fe 2 (III/III) Intermediate during Fatty Acid Decarboxylation by UndA

The iron-dependent oxidase UndA cleaves one C3–H bond and the C1–C2 bond of dodecanoic acid to produce 1-undecene and CO 2 . A published X-ray crystal structure showed that UndA has a heme-oxygenase-like fold, thus associating it with a structural superfamily that includes known and postulated non-heme diiron proteins, but revealed only a single iron ion in the active site. Mechanisms proposed for initiation of decarboxylation by cleavage of the C3–H bond using a monoiron cofactor to activate O 2 necessarily invoked unusual or potentially unfeasible steps. Here we present spectroscopic, crystallographic, and biochemical evidence that the cofactor of Pseudomonas fluorescens Pf-5 UndA is actually a diiron cluster and show that binding of the substrate triggers rapid addition of O 2 to the Fe 2 (II/II) cofactor to produce a transient peroxo-Fe 2 (III/III) intermediate. Finally, the observations of a diiron cofactor and substrate-triggered formation of a peroxo-Fe 2 (III/III) intermediate suggest a small set of possible mechanisms for O 2 , C3–H and C1–C2 activation by UndA; these routes obviate the problematic steps of the earlier hypotheses that invoked a single iron.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Conversion of biomass by efficient base-catalyzed decarboxylation reaction

Highly efficient and universal biomass conversion methods are described. Methods utilize a base-catalyzed decarboxylation reaction in a conversion process carried out in the presence of excess base to overcome carbonate formation from CO2. Methods can efficiently convert all components of a biomass feedstock to liquid hydrocarbons and carbon dioxide byproduct. The process has several versions: hydrolysis and alcoholysis, etc. The chemical process can be carried out with nearly 100% conversion for any type of biomass feedstock and requires no expensive or complicated pretreatment. The conversion reactions can be carried out at moderate temperatures of 170-300° C. and form a product that can include a mixture of hydrocarbons and oxygenated hydrocarbons, including alcohols and phenol derivatives.

09 BIOMASS FUELS↗
DOE OSTI2020

N-Terminal Decarboxylation as a Probe for Intramolecular Contact Formation in $γ$-Glu-(Pro) n -Met Peptides

The kinetics of intramolecular-contact formation between remote functional groups in peptides with restricted conformational flexibility were examined using designed peptides with variable-length proline bridges. As probes for this motion, free radicals were produced using the • OH-induced oxidation at the C-terminal methionine residue of γ-Glu-(Pro) n -Met peptides ( n = 0–3). The progress of the radicals’ motion along the proline bridges was monitored as the radicals underwent reactions along the peptides’ backbones. Of particular interest was the reaction between the sulfur atom located in the side chain of the oxidized Met residue and the unprotonated amino group of the glutamic acid moiety. Interactions between them were probed by the radiation-chemical yields (expressed as G values) of the formation of C-centered, α-aminoalkyl radicals (αN) on the Glu residue. These radicals were monitored directly or via their reaction with p -nitroacetophenone (PNAP) to generate the optically detected PNAP •– radical anions. The yields of these αN radicals were found to be linearly dependent on the number of Pro residues. A constant decrease by 0.09 μM J –1 per spacing Pro residue of the radiation-chemical yields of G (αN) was observed. Previous reports support the conclusion that the αN radicals in these cases would have to result from (S$\therefore$N) + -bonded cyclic radical cations that arose as a result from direct contact between the ends of the peptides. Furthermore, by analogy with the rate constants for the formation of intramolecularly (S$\therefore$S) + -bonded radical cations in Met-(Pro) n -Met peptides ( J. Phys. Chem. B 2016 , 120 , 9732), the rate constants for the formation of intramolecularly (S$\therefore$N) + -bonded radical cations are activated to the same extent for all of the γ-Glu-(Pro) n -Met peptides. Thus, the continuous decrease of G (αN) with the number of Pro residues (from 0 to 3) suggests that the formation of a contact between the S-atom in the C-terminal Met residue and the N-atom of a deprotonated N-terminal amino group of Glu is controlled in peptides with 0 to 3 Pro residues by the relative diffusion of the S •+ and unoxidized N-atom. The overall rate constants of cyclization to form the (S$\therefore$N)-bonded radical cations were estimated to be 3.8 × 10 6 , 1.8 × 10 6 , and 8.1 × 10 5 s –1 for peptides with n = 0, 1, and 2 Pro residues, respectively. If activation is the same for all of the peptides, then these rate constants are a direct indication for the end-to-end dynamics along the chain.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗