A practical approach for estimating the escape ratio of near-infrared solar-induced chlorophyll fluorescence
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The possibility of broaching, or the release of fluids at the seafloor due to a damaged or faulty well, is a hazard that must be assessed in the well permitting process. Here, this paper describes a numerical simulation study of a real-life scenario where a complex, permeable sandy formation, connected to the seafloor via known chimneys/seeps, is intersected by a damaged production well that drains another deeper, gas-bearing formation. The objective of the study is to determine the transport and fate of hydrocarbon reservoir fluids (gas and brines) escaping into the sandy formation through the casing shoe of the failed well, and to determine the time it takes for these contaminants to reach the ocean floor. We conducted a detailed simulation study to represent the conditions, properties, and behavior of the system under such failure conditions, and we investigated the migration of gas and brine for a range of reservoir and chimney properties. A key conclusion is that, for such complex systems, modeling the three-dimensional geometry of the system in detail is the key to describing transport and assessing the time and magnitude of potential releases. For the system studied here, transport times range from under 2 years (highest permeabilities) to many decades, ensuring significant time to respond to potential broaching hazards. Lastly, under the conditions investigated in this study, we also determine that gas-dominated releases associated with low rates of water flow into the sandy formation are likely to cause hydrate formation that can reduce permeabilities in the colder, upper regions of the chimneys and possibly mitigate releases.
Shallow convection plays an important role in Earth's climate system by regulating the vertical transport of heat, moisture, and momentum in the lower troposphere. Aerosols, large-scale meteorology, and low-level convergence influence the spatiotemporal variability in shallow convection, and the coastal urban area of Houston, Texas, is an ideal laboratory to investigate these complex interactions. Here, geostationary satellite and ground-based radar observations from June to September 2022 during the TRacking Aerosol Convection interactions ExpeRiment (TRACER) and Experiment of Sea Breeze Convection, Aerosols, Precipitation, and Environment (ESCAPE) field campaigns are used to characterize the spatial coverage, vertical extent, and precipitation fraction of shallow convective clouds. The fused operational remote sensing datasets over a 250 km × 250 km domain are evaluated against profiling observations. The domain-wide diurnal shallow cloud fractions are used to identify four distinct modes of shallow convection. In all clusters, the domain-wide cloud fractions are consistently higher than the domain-wide precipitation fractions, and shallow cloud fractions are higher over water than they are over land, while the shallow precipitation fractions show the opposite behavior. In the two modes with minimal deep cloud activity, shallow cloud frequency is highest over ocean in the early morning, and there is a transition to higher shallow cloud frequency over land by the afternoon in one cluster or to high shallow cloud frequencies everywhere by the afternoon in the other. Lastly, we find regions with higher shallow cloud top heights and a large region along the coastline where shallow clouds are more likely to precipitate.
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ABSTRACT Intrinsic magnetic fields have long been thought to shield planets from atmospheric erosion via stellar winds; however, the influence of the plasma environment on atmospheric escape is complex. Here we study the influence of a weak intrinsic dipolar planetary magnetic field on the plasma environment and subsequent ion escape from a Mars-sized planet in a global three-dimensional hybrid simulation. We find that increasing the strength of a planet’s magnetic field enhances ion escape until the magnetic dipole’s standoff distance reaches the induced magnetosphere boundary. After this point increasing the planetary magnetic field begins to inhibit ion escape. This reflects a balance between shielding of the Southern hemisphere from ‘misaligned’ ion pickup forces and trapping of escaping ions by an equatorial plasmasphere. Thus, the planetary magnetic field associated with the peak ion escape rate is critically dependent on the stellar wind pressure. Where possible we have fit power laws for the variation of fundamental parameters (escape rate, escape power, polar cap opening angle, and effective interaction area) with magnetic field, and assessed upper and lower limits for the relationships.
The X-ray escape peaks are clearly visible in the high-resolution gamma spectra acquired by CsPbBr 3 , credit to the rapidly improving energy resolution of perovskite gamma detectors. But it also raises concerns. If this peak remains as significant as it is, perovskite gamma detectors would have very limited use in complex gamma spectrometry applications. This paper discusses the origin of the escape peaks in CsPbBr 3 detectors, benchmarked against Ge and CZT detectors. The Pb escape peak consists of four escape peaks that are merged together, while the Cs and Br escape peaks are hidden inside the photopeak of 137 Cs (662 keV). These combined effects either create a noticeable gamma peak observed to the left of the 662 keV photopeak when acquired using a high-resolution CsPbBr 3 detector or raise the left slope of the photopeak. We also explore potential methods to mitigate these peaks, such as applying anti-coincidence method. The height of the escape peaks diminishes as the detector volume increases but will not go away entirely. The relationship between the observed Pb escape peak and the detector's dimensions is demonstrated through Monte Carlo simulation.
The widespread application of recombinant DNA and synthetic biology approaches for microbial metabolic engineering pursuits has motivated the development of biocontainment strategies, targeting safe and secure deployment of genetically modified microorganisms (GMMs). However, the design rules and mechanistic drivers governing biocontainment efficacy, as well as impacts of biocontainment upon microbial fitness, remain to be comprehensively evaluated, hindering predictive design and application of these strategies. We have developed a platform for high-resolution analysis of a transactivated kill switch in laboratory and industrial strains of Saccharomyces cerevisiae to assess modes of biocontainment escape and establish design rules for development of kill switch systems in diverse microbes. A camphor-regulated, RelE toxin system was systematically deployed to assess the impacts of differential kill switch copy number and ploidy in laboratory vs industrial strains. CRISPR-mediated integration of the biocontainment system at various loci revealed rapid escape events driven, in part, by mutations to both the Cam-transactivator (cam-TA) and RelE toxin. Genetic engineering enabled recapitulation of escape phenotypes, confirming mechanisms of escape and establishing structure-function relationships in the cam-TA system. Interestingly, genomic resequencing of escape mutants also revealed a series of off-target mutations, implicating additional modes of kill switch escape. Multi-copy integration of the kill switch system mitigated these effects by orders of magnitude, without compromising the biosynthetic capacity of the microbes, but proved insufficient to establish sustained biocontainment. The resultant data define a series of key design rules for next-generation biocontainment strategies and add to a growing foundational knowledge base targeting establishment of secure biosystems designs.
An ideal therapeutic anti-SARS-CoV-2 antibody would resist viral escape 1,2,3 , have activity against diverse sarbecoviruses 4,5,6,7 , and be highly protective through viral neutralization 8,9,10,11 and effector functions 12,13 . Understanding how these properties relate to each other and vary across epitopes would aid the development of therapeutic antibodies and guide vaccine design. Here we comprehensively characterize escape, breadth and potency across a panel of SARS-CoV-2 antibodies targeting the receptor-binding domain (RBD). Despite a trade-off between in vitro neutralization potency and breadth of sarbecovirus binding, we identify neutralizing antibodies with exceptional sarbecovirus breadth and a corresponding resistance to SARS-CoV-2 escape. One of these antibodies, S2H97, binds with high affinity across all sarbecovirus clades to a cryptic epitope and prophylactically protects hamsters from viral challenge. Antibodies that target the angiotensin-converting enzyme 2 (ACE2) receptor-binding motif (RBM) typically have poor breadth and are readily escaped by mutations despite high neutralization potency. Nevertheless, we also characterize a potent RBM antibody (S2E12 8 ) with breadth across sarbecoviruses related to SARS-CoV-2 and a high barrier to viral escape. These data highlight principles underlying variation in escape, breadth and potency among antibodies that target the RBD, and identify epitopes and features to prioritize for therapeutic development against the current and potential future pandemics.
Direct detection experiments have set increasingly stringent limits on the cross section for spin-independent dark matter-nucleon interactions. In obtaining such limits, experiments primarily assume the standard halo model (SHM) as the distribution of dark matter in our Milky Way. Three astrophysical parameters are required to define the SHM: the local dark matter escape velocity, the local dark matter density and the circular velocity of the sun around the center of the galaxy. This paper studies the effect of the uncertainties in these three astrophysical parameters on the XENON1T exclusion limits using the publicly available DDCalc code. We compare limits obtained using the widely assumed escape velocity from the RAVE survey and the newly calculated escape velocity by Monari et al. using Gaia data. Our study finds that the astrophysical uncertainties are dominated by the uncertainty in the escape velocity (independent of the best fit value) at dark matter masses below 6 GeV and can lead to a variation of nearly 6 orders of magnitude in the exclusion limits at 4 GeV. Above a WIMP mass of 6 GeV, the uncertainty becomes dominated by the local dark matter density, leading to uncertainties of factors of ~10 (3) at 6 (15) GeV WIMP mass in the exclusion limits. Additionally, this work finds that the updated best fit value for the escape velocity based on Gaia data leads to only very minor changes to the effects of the astrophysical uncertainties on the XENON1T exclusion limits.
Successful intracellular delivery of nucleic acids (NAs) hinges on many factors, one of them being NAs’ efficacious escape from endosomes. As competent NA vectors, pH-responsive gemini surfactants (GSs) might achieve high efficacy by facilitating endosomal escape. However, how the GSs assist the escape remains debated as many proposed mechanisms still lack experimental support, which hinders replication and further improvement of the efficient delivery. Here, via UV, fluorescence spectroscopy, and small-angle neutron scattering (SANS), we examined a pH-responsive GS's and a pH-unresponsive GS's capabilities to compact DNA and withstand binding competition, and their interactions with model endosomal and lysosomal membranes, at varied pHs. Acidification-driven enhancement of DNA-compaction capability and of stability against binding competition were found specific to the pH-responsive GS. Alongside the pH-responsive GS's structural perturbation to the membranes as observed with SANS, the features suggest that pH-responsive GSs facilitate endosomal escape by releasing excess GS molecules from DNA-GS complexes upon acidification in endosome maturation, with the released GS molecules disrupting endosomal and lysosomal membranes and thereby assisting the escape. Here a general design principle for NA vectors is proposed on the basis of this experimental finding.
Narrow escape from confinement through a nano-channel is the critical step of complex transport processes including size exclusion-based separations, oil and gas extraction from the microporous subsurface environment, and RNA translocation through nuclear pore complex channels. While narrow escape has been studied using theoretical and computational methods, experimental quantification is rare because of the difficulty in confining a particle into a microscopic space through a nanoscale hole. In this paper, we studied narrow escape in the context of continuous nanoparticle diffusion within the liquid-filled void space of an ordered porous material. Specifically, we quantified the spatial dependence of nanoparticle motion and the sojourn times of individual particles in the interconnected confined cavities of a liquid-filled inverse opal film. We found that nanoparticle motion was inhibited near cavity walls and cavity escape was slower than predicted by existing theories and random-walk simulations. Here, a combined computational-experimental analysis indicated that translocation through a nano-channel is barrier-controlled rather than diffusion-controlled.
Container escapes enable the adversary to execute code on the host from inside an isolated container. Notably, these high severity escape vulnerabilities originate from three sources: (1) container profile misconfigurations, (2) Linux kernel bugs, and (3) container runtime vulnerabilities. While the first two cases have been studied in the literature, no works have investigated the impact of container runtime vulnerabilities. In this paper, to fill this gap, we study 59 CVEs for 11 different container runtimes. As a result of our study, we found that five of the 11 runtimes had nine publicly available PoC container escape exploits covering 13 CVEs. Our further analysis revealed all nine exploits are the result of a host component leaked into the container. Here, we apply a user namespace container defense to prevent the adversary from leveraging leaked host components and demonstrate that the defense stops seven of the nine container escape exploits.
Most previously authorized clinical antibodies against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have lost neutralizing activity to recent variants due to rapid viral evolution. To mitigate such escape, we preemptively enhance AZD3152, an antibody authorized for prophylaxis in immunocompromised individuals. Using deep mutational scanning (DMS) on the SARS-CoV-2 antigen, we identify AZD3152 vulnerabilities at antigen positions F456 and D420. Through two iterations of computational antibody design that integrates structure-based modeling, machine-learning, and experimental validation, we co-optimize AZD3152 against 24 contemporary and previous SARS-CoV-2 variants, as well as 20 potential future escape variants. Our top candidate, 3152-1142, restores full potency (100-fold improvement) against the more recently emerged XBB.1.5+F456L variant that escaped AZD3152, maintains potency against previous variants of concern, and shows no additional vulnerability as assessed by DMS. This preemptive mitigation demonstrates a generalizable approach for optimizing existing antibodies against potential future viral escape.
Convective clouds play an important role in Earth’s climate system and are a known source of extreme weather. Gaps in our understanding of convective vertical motions, microphysics, and precipitation across a full range of aerosol and meteorological regimes continue to limit our ability to predict the occurrence and intensity of these cloud systems. To improve predictability, the National Science Foundation (NSF) sponsored a large field experiment entitled “Experiment of Sea Breeze Convection, Aerosols, Precipitation, and Environment (ESCAPE).” ESCAPE took place between 30 May and 30 September 2022 in the vicinity of Houston, Texas, because this area frequently experiences isolated deep convection that interacts with the region’s mesoscale circulations and its range of aerosol conditions. ESCAPE focused on collecting observations of isolated deep convection through innovative sampling and developing novel analysis techniques. This included the deployment of two research aircraft, the National Research Council of Canada Convair-580 and the Stratton Park Engineering Company Learjet, which combined conducted 24 research flights from 30 May to 17 June. On the ground, three mobile X-band radars and one mobile Doppler lidar truck equipped with soundings were deployed from 30 May to 28 June. From 1 August to 30 September 2022, a dual-polarization C-band radar was deployed and operated using a novel, multisensor agile adaptive sampling strategy to track the entire life cycle of isolated convective clouds. Analysis of the ESCAPE observations has already yielded preliminary findings on how aerosols and environmental conditions impact the convective life cycle.
The Experiment of Sea-Breeze Convection, Aerosols, Precipitation and Environment (ESCAPE) field project deployed two aircraft and ground-based assets in the vicinity of Houston, Texas, between 27 May and 2 July 2022, examining how meteorological conditions, dynamics, and aerosols control the initiation, early growth stage, and evolution of coastal convective clouds. To ensure that airborne- and ground-based assets were deployed appropriately, a forecasting and nowcasting team was formed. Daily forecasts guided real-time decision-making by assessing synoptic weather conditions, environmental aerosol, and a variety of atmospheric modeling data to assign a probability for meeting specific ESCAPE campaign objectives. During the research flights, a small team of forecasters provided “nowcasting” support by analyzing radar, satellite, and new model data in real time. The nowcasting team proved invaluable to the campaign operation, as sometimes changing environmental conditions affected, for example, the timing of convective initiation. In addition to the success of the forecasting and nowcasting teams, the ESCAPE campaign offered a unique “testbed” opportunity where in-person and virtual support both contributed to campaign objectives. The forecasting and nowcasting teams were each composed of new and experienced forecasters alike, where new forecasters were given invaluable experience that would otherwise be difficult to attain. Both teams received training on forecast models, map analysis, Hybrid Single-Particle Lagrangian Integrated Trajectory model (HYSPLIT), and thermodynamic sounding analysis before the beginning of the campaign. In this article, the ESCAPE forecasting and nowcasting teams reflect on these experiences, providing potentially useful advice for future field campaigns requiring forecasting and nowcasting support in a hybrid virtual/in-person framework.
Abstract Measuring the escape velocity of the Milky Way is critical in obtaining the mass of the Milky Way, understanding the dark matter velocity distribution, and building the dark matter density profile. In Necib & Lin, we introduced a strategy to robustly measure the escape velocity. Our approach takes into account the presence of kinematic substructures by modeling the tail of the stellar distribution with multiple components, including the stellar halo and the debris flow called the Gaia Sausage (Enceladus). In doing so, we can test the robustness of the escape velocity measurement for different definitions of the “tail” of the velocity distribution and the consistency of the data with different underlying models. In this paper, we apply this method to the Gaia eDR3 data release and find that a model with two components is preferred, although results from a single-component fit are also consistent. Based on a fit to retrograde data with two bound components to account for the relaxed halo and the Gaia Sausage, we find the escape velocity of the Milky Way at the solar position to be v esc = 445 − 8 + 25 km s −1 . A fit with a single component to the same data gives v esc = 472 − 12 + 17 km s −1 . Assuming a Navarro−Frenck−White dark matter profile, we find a Milky Way concentration of c 200 = 19 − 7 + 11 and a mass of M 200 = 4.6 − 0.8 + 1.5 × 10 11 M ⊙ , which is considerably lighter than previous measurements.
Abstract The escape velocity profile of the Milky Way offers a crucial and independent measurement of its underlying mass distribution and dark matter (DM) properties. Using a sample of stars from the third data release of Gaia with 6D kinematics and strict quality cuts, we obtain an escape velocity profile of the Milky Way from 4 to 11 kpc in Galactocentric radius. To infer the escape velocity in radial bins, we model the tail of the stellar speed distribution with both traditional power-law models and a new functional form that we introduce. While power-law models tend to rely on extrapolation to high speeds, we find our new functional form gives the most faithful representation of the observed distribution. Using this for the escape velocity profile, we constrain the properties of the Milky Way’s DM halo modeled as a Navarro–Frenck–White profile. Combined with constraints from the circular velocity at the solar position, we obtain a concentration and mass of c 200 c DM = 13.9 − 4.3 + 6.2 and M 200 c DM = 0.55 − 0.14 + 0.15 × 10 12 M ⊙ . This corresponds to a total Milky Way mass of M 200 c = 0.64 − 0.14 + 0.15 × 10 12 M ⊙ , which is on the low end of the historic range of the galaxy’s mass, but in line with other recent estimates.