Hot moments in ecosystem fluxes: High GPP anomalies exert outsized influence on the carbon cycle and are differentially driven by moisture availability across biomes
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Steven A Kannenberg↗
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Sources of variation in nitrous oxide flux from Amazonian ecosystems
Nitrous oxide flux and soil nutrient characteristics were measured in three undisturbed tropical ecosystem types, in cleared and burned areas, and in areas of forest converted to pasture near Manaus, Brazil. Nitrogen mineralization, nitrification, and soil nitrogen pools were high in upland forests on clay soils (terra firme) and low in the sand-type and floodplain (varzea) soils. Nitrous oxide flux followed the same pattern, with an average flux of 1.9 ng/sq cm per hr in terra firme, 0.3 in sand types, and 0.1 in varzea. Flux from recently cleared and burned areas did not differ from terra firme forest, but pastures had significantly elevated fluxes (10.3 ng/sq cm per hr). These data were combined with satellite data-based areal estimates of land cover classes to estimate total N2O-N flux from the intensive study area used by the Amazon Boundary Layer Experiment. Total N2O-N flux from the area was 22.9 kg/h; pastures covered 11 percent of the area but accounted for over 40 percent of the flux.
Matson, P. A.↗
One-Dimensional Coupled Ecosystem-Carbon Flux Model for the Simulation of Biogeochemical Parameters at Ocean Weather Station P
In this Technical Publication, we describe the model functionality and analyze its application to the seasonal and interannual variations of phytoplankton, nutrients, pCO2 and CO2 concentrations in the eastern subarctic Pacific at Ocean Weather Station P (OWSP, 50 deg. N 145 deg. W). We use a verified one-dimensional ecosystem model, coupled with newly incorporated carbon flux and carbon chemistry components, to simulate 22 years (1958-1980) of pCO2 and CO2 variability at Ocean Weather Station P (OWS P). This relatively long period of simulation verifies and extends the findings of previous studies using an explicit approach for the biological component and realistic coupling with the carbon flux dynamics. The slow currents and the horizontally homogeneous ocean in the subarctic Pacific make OWS P one of the best available candidates for modeling the chemistry of the upper ocean in one dimension. The chlorophyll and ocean currents composite for 1998 illustrates this premise. The chlorophyll concentration map was derived from SeaWiFS data and the currents are from an OGCM simulation (from R. Murtugudde).
Signorini, S.↗
Sources of Uncertainty in Predicting Land Surface Fluxes Using Diverse Data and Models
In the domain of predicting land surface fluxes, models are used to bring data from large observation networks and satellite remote sensing together to make predictions about present and future states of the Earth. Characterizing the uncertainty about such predictions is a complex process and one that is not yet fully understood. Uncertainty exists about initialization, measurement and interpolation of input variables; model parameters; model structure; and mixed spatial and temporal supports. Multiple models or structures often exist to describe the same processes. Uncertainty about structure is currently addressed by running an ensemble of different models and examining the distribution of model outputs. To illustrate structural uncertainty, a multi-model ensemble experiment we have been conducting using the Terrestrial Observation and Prediction System (TOPS) will be discussed. TOPS uses public versions of process-based ecosystem models that use satellite-derived inputs along with surface climate data and land surface characterization to produce predictions of ecosystem fluxes including gross and net primary production and net ecosystem exchange. Using the TOPS framework, we have explored the uncertainty arising from the application of models with different assumptions, structures, parameters, and variable definitions. With a small number of models, this only begins to capture the range of possible spatial fields of ecosystem fluxes. Few attempts have been made to systematically address the components of uncertainty in such a framework. We discuss the characterization of uncertainty for this approach including both quantifiable and poorly known aspects.
Dungan, Jennifer L.↗
Biocrust contribution to ecosystem carbon fluxes varies along an elevational gradient
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Eva Dettweiler‐Robinson↗
Source Decomposition of Eddy-Covariance CO 2 Flux Measurements for Evaluating a High-Resolution Urban CO 2 Emissions Inventory
We present the comparison of source-partitioned CO2 flux measurements with a high-resolution urban CO 2 emissions inventory (Hestia). Tower-based measurements of CO and 14 C are used to partition net CO 2 flux measurements into fossil and biogenic components. A flux footprint model is used to quantify spatial variation in flux measurements. We compare the daily cycle and spatial structure of Hestia and eddy-covariance derived fossil fuel CO 2 emissions on a seasonal basis. Hestia inventory emissions exceed the eddy-covariance measured emissions by 0.36 µ mol m −2 s −1 (3.2%) in the cold season and 0.62 µ mol m −2 s −1 (9.1%) in the warm season. The daily cycle of fluxes in both products matches closely, with correlations in the hourly mean fluxes of 0.86 (cold season) and 0.93 (warm season). The spatially averaged fluxes also agree in each season and a persistent spatial pattern in the differences during both seasons that may suggest a bias related to residential heating emissions. In addition, in the cold season, the magnitudes of average daytime biological uptake and nighttime respiration at this flux site are approximately 15% and 27% of the mean fossil fuel CO 2 emissions over the same time period, contradicting common assumptions of no significant biological CO 2 exchange in northern cities during winter. This work demonstrates the effectiveness of using trace gas ratios to adapt eddy-covariance flux measurements in urban environments for disaggregating anthropogenic CO 2 emissions and urban ecosystem fluxes at high spatial and temporal resolution.
eddy-covariance flux measurements↗
Dense Feature Tracking of Atmospheric Winds with Deep Optical Flow
Atmospheric winds are a key physical phenomenon impacting natural hazards, energy transport, ocean currents, large-scale circulation, and ecosystem fluxes. Observing winds is a complex process and presents a large gap in NASA’s Earth Observation System. Atmospheric motion vectors (AMVs) aim to fill this gap by making numerical estimates of cloud movement between sequences of multi-spectral satellite images, tracking clouds and water vapor. Recent imaging hardware and software advancements have enabled the use of numerical optical flow techniques to produce accurate and dense vector fields outperforming traditional methods. This work presents WindFlow as the first machine learning based system for feature tracking atmospheric motion using optical flow. Due to the lack of large-scale satellite-based observations, we leverage high-resolution numerical simulations from NASA's GEOS-5 Nature Run to perform supervised learning and transfer to satellite images. We demonstrate that our approach using deep learning based optical flow scales to ultra-high-resolution images of size 2881x5760 with less than 1 m/s bias and 2.5 m/s average error. Four network and learning architectures are compared and it is found that recurrent all-pairs field transforms (RAFT) produces the lowest errors on all metrics for wind speed and direction. Results on held out numerical outputs shows RAFT's good performance in each of the spatial, temporal, and physical dimensions. A comparison between WindFlow and an operational AMV product against rawinsonde observations show that RAFT transfers across simulations and thermal infrared satellite observations. This work shows that machine learning based optical flow is an efficient approach to generating robust feature tracking for AMVs consistently over large regions.
Atmospheric winds↗
Cross-system comparisons of soil nitrogen transformations and nitrous oxide flux in tropical forest ecosystems
Soil nitrogen transformations and nitrous oxide flux across the soil-air interface have been measured in a variety of tropical forest sites and correlated with patterns of nitrogen circulation. Nitrogen mineralizaton and nitrification potentials were found to be high in the relatively fertile Costa Rica sites and the Amazonian oxisol/ultisols, intermediate in Amazonian white sand soils, and low in the Hawaiian montane sites. Nitrous oxide fluxes ranged from 0 to 6.2 ng/sq cm per h, and the mean flux per site was shown to be highly correlated with mean nitrogen mineralization.
Matson, Pamela A.↗
FLUXNET-CH4 Synthesis Activity: Objectives, Observations, and Future Directions
This paper describes the formation of, and initial results for, a new FLUXNET coordination network for ecosystem-scale methane (CH4) measurements at 60 sites globally, organized by the Global Carbon Project in partnership with other initiatives and regional flux tower networks. The objectives of the effort are presented along with an overview of the coverage of eddy covariance (EC) CH4 flux measurements globally, initial results comparing CH4 fluxes across the sites, and future research directions and needs. Annual estimates of net CH4 fluxes across sites ranged from −0.2 ± 0.02 g C m(exp -2) yr(exp -1) for an upland forest site to 114.9 ± 13.4 g C m(exp -2) yr(exp -1) for an estuarine freshwater marsh, with fluxes exceeding 40 g C m(exp -2) yr(exp -1) at multiple sites. Average annual soil and air temperatures were found to be the strongest predictor of annual CH4 flux across wetland sites globally. Water table position was positively correlated with annual CH4 emissions, although only for wetland sites that were not consistently inundated throughout the year. The ratio of annual CH4 fluxes to ecosystem respiration increased significantly with mean site temperature. Uncertainties in annual CH4 estimates due to gap-filling and random errors were on average ±1.6 g C m(exp -2) yr(exp -1) at 95% confidence, with the relative error decreasing exponentially with increasing flux magnitude across sites. Through the analysis and synthesis of a growing EC CH4 flux database, the controls on ecosystem CH4 fluxes can be better understood, used to inform and validate Earth system models, and reconcile differences between land surface model- and atmospheric-based estimates of CH4 emissions.
Knox, Sara H.↗
Seasonal nitrous oxide flux from an intensively managed pasture in a humid subtropical ecosystem
Nitrous oxide (N2O) flux from vented chambers was measured over intensively and minimally managed bermuda grass hay meadows in a humid, subtropical ecosystem for several years during scheduled sampling protocol following harvest, fertilization and rainfall events while measuring diel N2O emissions once during each of 5 seasonal day growth cycles which divided each calendar year. Soil pools of nitrite NO2(-), nitrate NO3(-), and ammonia (NH3) were measured in soil samples taken at 2 and 10 cm depths during each emission collection to determine transformations of the nitrogen pools coupled with N2O emissions. The highest diel N2O emission occur midday in the Spring cycle, measuring 9.0 g N/ha/d only for several weeks, while emissions dropped to less than 1.0 g N/ha/day during hot, dry, and colder months. Intensively managed meadows (4 fertilizations and harvests per year plus pest management) induced higher seasonal N2O emissions than minimal treatment (1 fertilization and harvest) averaging 2.75 and 5.97 g N/ha/day. Nitrous oxide emission data as responses to soil parameters and environmental parameters were also measured where air temperature, soil moisture, and fertilization were the most powerful factors.
Brams, Eugene A.↗
Ecosystem age-class dynamics and distribution in the LPJ-wsl v2.0 global ecosystem model
Forest ecosystem processes follow classic responses with age, peaking production around canopy closure and declining thereafter. Although age dynamics might be more dominant in certain regions over others, demographic effects on net primary production (NPP) and heterotrophic respiration (Rh) are bound to exist. Yet, explicit representation of ecosystem demography is notably absent in many global ecosystem models. This is concerning because the global community relies on these models to regularly update our collective understanding of the global carbon cycle. This paper aims to present the technical developments of a computationally efficient approach for representing age-class dynamics within a global ecosystem model, the Lund–Potsdam–Jena – Wald, Schnee, Landschaft version 2.0 (LPJ-wsl v2.0) dynamic global vegetation model and to determine if explicit representation of demography influenced ecosystem stocks and fluxes at global scales or at the level of a grid cell. The modeled age classes are initially created by simulated fire and prescribed wood harvesting or abandonment of managed land, otherwise aging naturally until an additional disturbance is simulated or prescribed. In this paper, we show that the age module can capture classic demographic patterns in stem density and tree height compared to inventory data, and that simulated patterns of ecosystem function follow classic responses with age. We also present two scientific applications of the model to assess the modeled age-class distribution over time and to determine the demographic effect on ecosystem fluxes relative to climate. Simulations show that, between 1860 and 2016, zonal age distribution on Earth was driven predominately by fire, causing a 45- to 60-year difference in ages between older boreal (50–90° N) and younger tropical (23° S–23° N) ecosystems. Between simulation years 1860 and 2016, land-use change and land management were responsible for a decrease in zonal age by −6 years in boreal and by −21 years in both temperate (23–50° N) and tropical latitudes, with the anthropogenic effect on zonal age distribution increasing over time. A statistical model helped to reduce LPJ-wsl v2.0 complexity by predicting per-grid-cell annual NPP and Rh fluxes by three terms: precipitation, temperature, and age class; at global scales, R2 was between 0.95 and 0.98. As determined by the statistical model, the demographic effect on ecosystem function was often less than 0.10 kg C/sq. myr but as high as 0.60 kg C/sq. myr where the effect was greatest. In the eastern forests of North America, the simulated demographic effect was of similar magnitude, or greater than, the effects of climate; simulated demographic effects were similarly important in large regions of every vegetated continent. Simulated spatial datasets are provided for global ecosystem ages and the estimated coefficients for effects of precipitation, temperature and demography on ecosystem function. The discussion focuses on our finding of an increasing role of demography in the global carbon cycle, the effect of demography on relaxation times (resilience) following a disturbance event and its implications at global scales, and a finding of a 40 Pg C increase in biomass turnover when including age dynamics at global scales. Whereas time is the only mechanism that increases ecosystem age, any additional disturbance not explicitly modeled will decrease age. The LPJ-wsl v2.0 age module represents another step forward towards understanding the role of demography in global ecosystems.
LPJ-wsl↗
Terrestrial Carbon Sinks in the Brazilian Amazon and Cerrado Region Predicted from MODIS Satellite Data and Ecosystem Modeling
A simulation model based on satellite observations of monthly vegetation cover from the Moderate Resolution Imaging Spectroradiometer (MODIS) was used to estimate monthly carbon fluxes in terrestrial ecosystems of Brazilian Amazon and Cerrado regions over the period 2000-2004. Net ecosystem production (NEP) flux for atmospheric CO2 in the region for these years was estimated. Consistently high carbon sink fluxes in terrestrial ecosystems on a yearly basis were found in the western portions of the states of Acre and Rondonia and the northern portions of the state of Par a. These areas were not significantly impacted by the 2002-2003 El Nino event in terms of net annual carbon gains. Areas of the region that show periodically high carbon source fluxes from terrestrial ecosystems to the atmosphere on yearly basis were found throughout the state of Maranhao and the southern portions of the state of Amazonas. As demonstrated though tower site comparisons, NEP modeled with monthly MODIS Enhanced Vegetation Index (EVI) inputs closely resembles the measured seasonal carbon fluxes at the LBA Tapajos tower site. Modeling results suggest that the capacity for use of MODIS Enhanced Vegetation Index (EVI) data to predict seasonal uptake rates of CO2 in Amazon forests and Cerrado woodlands is strong.
Potter, C.↗
Comparative Model Evaluation Studies of Biogenic Trace Gas Fluxes in Tropical Forests
Simulation modeling can play a number of important roles in large-scale ecosystem studies, including synthesis of patterns and changes in carbon and nutrient cycling dynamics, scaling up to regional estimates, and formulation of testable hypotheses for process studies. Recent comparative studies have shown that ecosystem models of soil trace gas exchange with the atmosphere are evolving into several distinct simulation approaches. Different levels of detail exist among process models in the treatment of physical controls on ecosystem nutrient fluxes and organic substrate transformations leading to gas emissions. These differences are is in part from distinct objectives of scaling and extrapolation. Parameter requirements for initialization scalings, boundary conditions, and time-series driven therefore vary among ecosystem simulation models, such that the design of field experiments for integration with modeling should consider a consolidated series of measurements that will satisfy most of the various model requirements. For example, variables that provide information on soil moisture holding capacity, moisture retention characteristics, potential evapotranspiration and drainage rates, and rooting depth appear to be of the first order in model evaluation trials for tropical moist forest ecosystems. The amount and nutrient content of labile organic matter in the soil, based on accurate plant production estimates, are also key parameters that determine emission model response. Based on comparative model results, it is possible to construct a preliminary evaluation matrix along categories of key diagnostic parameters and temporal domains. Nevertheless, as large-scale studied are planned, it is notable that few existing models age designed to simulate transient states of ecosystem change, a feature which will be essential for assessment of anthropogenic disturbance on regional gas budgets, and effects of long-term climate variability on biosphere-atmosphere exchange.
Potter, C. S.↗
A Preliminary Study of CO2 Flux Measurements by Lidar
A mechanistic understanding of the global carbon cycle requires quantification of terrestrial ecosystem CO2 fluxes at regional scales. In this paper, we analyze the potential of a Doppler DIAL system to make flux measurements of atmospheric CO2 using the eddy-covariance and boundary layer budget methods and present results from a ground based experiment. The goal of this study is to put CO2 flux point measurements in a mesoscale context. In June 2007, a field experiment combining a 2-m Doppler Heterodyne Differential Absorption Lidar (HDIAL) and in-situ sensors of a 447-m tall tower (WLEF) took place in Wisconsin. The HDIAL measures simultaneously: 1) CO2 mixing ratio, 2) atmosphere structure via aerosol backscatter and 3) radial velocity. We demonstrate how to synthesize these data into regional flux estimates. Lidar-inferred fluxes are compared with eddy-covariance fluxes obtained in-situ at 396m AGL from the tower. In cases where the lidar was not yet able to measure the fluxes with acceptable precision, we discuss possible modifications to improve system performance.
Gibert, Fabien↗
Role of Boreal Vegetation in Controlling Ecosystem Processes and Feedbacks to Climate
In the field, dark respiration rates are greatest in cores from more northerly locations. This is due in part to greater amounts of dwarf shrub biomass in the more northerly cores, but also to differences in soil organic matter quality. Laboratory incubations of these soils under common conditions show some evidence for greater pools of available carbon in soils from more northerly tundra sites, although the most northerly site does not fit this pattern for reasons which are unclear at this time. While field measurements of cores transplanted among different vegetation types at the same location (Toolik Lake) show relatively small differences in whole ecosystem carbon flux, laboratory incubation of these same soils shows that there are large differences in soil respiration rates under common conditions. This is presumably due to differences in organic matter quality. Microenvironmental site factors (temperature, soil moisture, degree of anaerobiosis, etc.) may be responsible for evening out these differences in the field. These site factors, which differ with slope, aspect, and drainage within a given location along the latitudinal gradient, appear to exert at least as strong a control over carbon fluxes as do macroclimatic factors among sites across the latitudinal gradient. While our field measurements indicate that, in the short term, warming will tend to increase ecosystem losses Of CO2 via respiration more than they will increase plant gross assimilation, the degree to which different topographically-defined plant communities will respond is likely to vary.
Chapin, F. S., III↗
Driving terrestrial ecosystem models from space
Regional air pollution, land-use conversion, and projected climate change all affect ecosystem processes at large scales. Changes in vegetation cover and growth dynamics can impact the functioning of ecosystems, carbon fluxes, and climate. As a result, there is a need to assess and monitor vegetation structure and function comprehensively at regional to global scales. To provide a test of our present understanding of how ecosystems operate at large scales we can compare model predictions of CO2, O2, and methane exchange with the atmosphere against regional measurements of interannual variation in the atmospheric concentration of these gases. Recent advances in remote sensing of the Earth's surface are beginning to provide methods for estimating important ecosystem variables at large scales. Ecologists attempting to generalize across landscapes have made extensive use of models and remote sensing technology. The success of such ventures is dependent on merging insights and expertise from two distinct fields. Ecologists must provide the understanding of how well models emulate important biological variables and their interactions; experts in remote sensing must provide the biophysical interpretation of complex optical reflectance and radar backscatter data.
Waring, R. H.↗
Field Micrometeorological Measurements, Process-Level Studies and Modeling of Methane and Carbon Dioxide Fluxes in a Boreal Wetland Ecosystem
The main instrumentation platform consisted of eddy correlation sensors mounted on a scaffold tower at a height of 4.2 m above the peat surface. The sensors were attached to a boom assembly which could be rotated into the prevailing winds. The boom assembly was mounted on a movable sled which, when extended, allowed sensors to be up to 2 m away from the scaffolding structure to minimize flow distortion. When retracted, the sensors could easily be installed, serviced or rotated. An electronic level with linear actuators allowed the sensors to be remotely levelled once the sled was extended. Two instrument arrays were installed. A primary (fast-response) array consisted of a three-dimensional sonic anemometer, a methane sensor (tunable diode laser spectrometer), a carbon dioxide/water vapor sensor, a fine wire thermocouple and a backup one-dimensional sonic anemometer. The secondary array consisted of a one-dimensional sonic anemometer, a fine wire thermocouple and a Krypton hygrometer. Descriptions of these sensors may be found in other reports (e.g., Verma; Suyker and Verma). Slow-response sensors provided supporting measurements including mean air temperature and humidity, mean horizontal windspeed and direction, incoming and reflected solar radiation, net radiation, incoming and reflected photosynthetically active radiation (PAR), soil heat flux, peat temperature, water-table elevation and precipitation. A data acquisition system (consisting of an IBM compatible microcomputer, amplifiers and a 16 bit analog-to-digital converter), housed in a small trailer, was used to record the fast response signals. These signals were low-pass filtered (using 8-pole Butterworth active filters with a 12.5 Hz cutoff frequency) and sampled at 25 Hz. Slow-response signals were sampled every 5 s using a network of CR21X (Campbell Scientific, Inc., Logan Utah) data loggers installed in the fen. All signals were averaged over 30-minute periods (runs).
Verma, S. B.↗
Hourly Carbon Fluxes Estimation Using the GOES Advanced Baseline Imager (ABI) Data Over the Conterminous USA
Tremendous efforts by Fluxnet scientists over the past few decades have made thousands of site-years of carbon flux observations available for advancing our understanding of carbon cycling in terrestrial ecosystems. One of key Fluxnet measurements is net ecosystem exchange (NEE) as it is directly related to carbon budget of terrestrial ecosystems. However, carbon flux estimation studies using satellite remote sensing have focused mainly on daily Gross Primary Production (GPP). The satellite based carbon flux estimation used the polar orbiting satellite sensors (e.g., Moderate Resolution Imaging Spectroradiometer (MODIS)), which allow us to observe target regions only once during the day. Because daily NEE is close to zero value, the carbon flux models using the polar orbiting satellite data have not been well used for NEE estimation. The new generation of geostationary satellite sensors (e.g., GOES Advanced Baesline Imager (ABI) and Himawari Advanced Himawari Imager (AHI)) provide frequent observations, often less than every 10 minutes. Here, we use GOES ABI data to estimate hourly NEE over the conterminous USA. We used the Terrestrial Observation Prediction System (TOPS) model for estimating hourly NEE. TOPS is a diagnostic ecosystem process model that simulates the fluxes of carbon and water through vegetation in response to climate variability. For the climate input, we developed hourly climate data using the same algorithm with NASA Earth Exchange Gridded Daily Meteorology (NEX-GDM) datasets based on machine learning techniques. The hourly climate data includes precipitation, maximum temperature, minimum temperature, dew point temperature, and, in particular, solar radiation that is directly derived from the Geostationary observations. The spatial patterns of ecosystem parameters used in TOPS are optimized using satellite Solar Induced Fluorescence (SIF) data. The high frequency GPP estimations from geostationary satellite sensors make it comparable to the instantaneous SIF data than daily GPP. We also used Fluxnet data for optimization of model parameters and the validation of the output. The derived data addresses the diurnal dynamics of carbon cycling at large scales and should help in reducing the uncertainties in carbon budget studies.
Geostationary satellite↗