Results for “FAIR Digital Object”

DOE OSTI2022

Challenges for Implementing FAIR Digital Objects with High Performance Workflows

New types of workflows are being used in science that couple traditional distributed and high-performance computing (HPC) with data-intensive approaches, and orchestrate ensembles of numerical simulations and artificial intelligence (AI) models. Such workflows may use AI models to supplement computation where numerical simulations may be too computationally expensive, to automate trivial yet time consuming operations, to perform preliminary selections among intractable numbers of combinations in domains as diverse as protein binding, fine-grid climate simulations, and drug discovery.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Making digital objects FAIR in high energy physics: An implementation for Universal FeynRules Output (UFO) models

Research in the data-intensive discipline of high energy physics (HEP) often relies on domain-specific digital contents. Reproducibility of research relies on proper preservation of these digital objects. This paper reflects on the interpretation of principles of Findability, Accessibility, Interoperability, and Reusability (FAIR) in such context and demonstrates its implementation by describing the development of an end-to-end support infrastructure for preserving and accessing Universal FeynRules Output (UFO) models guided by the FAIR principles. UFO models are custom-made python libraries used by the HEP community for Monte Carlo simulation of collider physics events. Our framework provides simple but robust tools to preserve and access the UFO models and corresponding metadata in accordance with the FAIR principles.

Neubauer, Mark S.↗

DOE OSTI2023

Enhancing Scientific Research with FAIR Digital Objects in the National Science Data Fabric

Not Available

97 MATHEMATICS AND COMPUTING↗

NASA NTRS1979

Convective rainfall estimation from digital GOES-1 infrared data

An investigation was conducted to determine the feasibility of developing and objective technique for estimating convective rainfall from digital GOES-1 infrared data. The study area was a 240 km by 240 km box centered on College Station, Texas (Texas A and M University). The Scofield and Oliver (1977) rainfall estimation scheme was adapted and used with the digital geostationary satellite data. The concept of enhancement curves with respect to rainfall approximation is discussed. Raingage rainfall analyses and satellite-derived rainfall estimation analyses were compared. The correlation for the station data pairs (observed versus estimated rainfall amounts) for the convective portion of the storm was 0.92. It was demonstrated that a fairly accurate objective rainfall technique using digital geostationary infrared satellite data is feasible. The rawinsonde and some synoptic data that were used in this investigation came from NASA's Atmospheric Variability Experiment, AVE 7.

Sickler, G. L.↗

DOE OSTI2022

F*** workflows: when parts of FAIR are missing

The FAIR principles for scientific data (Findable, Accessible, Interoperable, Reusable) are also relevant to other digital objects such as research software and scientific workflows that operate on scientific data. The FAIR principles can be applied to the data being handled by a scientific workflow as well as the processes, software, and other infrastructure which are necessary to specify and execute a workflow. The FAIR principles were designed as guidelines, rather than rules, that would allow for differences in standards for different communities and for different degrees of compliance. There are many practical considerations which impact the level of FAIR-ness that can actually be achieved, including policies, traditions, and technologies. Because of these considerations, obstacles are often encountered during the workflow lifecycle that trace directly to shortcomings in the implementation of the FAIR principles. Here, we detail some cases, without naming names, in which data and workflows were Findable but otherwise lacking in areas commonly needed and expected by modern FAIR methods, tools, and users. We describe how some of these problems, all of which were overcome successfully, have motivated us to push on systems and approaches for fully FAIR workflows.

Wilkinson, Sean↗

DOE OSTI2025

Applying the FAIR Principles to computational workflows

Recent trends within computational and data sciences show an increasing recognition and adoption of computational workflows as tools for productivity and reproducibility that also democratize access to platforms and processing know-how. As digital objects to be shared, discovered, and reused, computational workflows benefit from the FAIR principles, which stand for Findable, Accessible, Interoperable, and Reusable. The Workflows Community Initiative’s FAIR Workflows Working Group (WCI-FW), a global and open community of researchers and developers working with computational workflows across disciplines and domains, has systematically addressed the application of both FAIR data and software principles to computational workflows. We present recommendations with commentary that reflects our discussions and justifies our choices and adaptations. These are offered to workflow users and authors, workflow management system developers, and providers of workflow services as guidelines for adoption and fodder for discussion. The FAIR recommendations for workflows that we propose in this paper will maximize their value as research assets and facilitate their adoption by the wider community.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Codebase release 2.0 for UFOManager

Research in the data-intensive discipline of high energy physics (HEP) often relies on domain-specific digital contents. Reproducibility of research relies on proper preservation of these digital objects. This paper reflects on the interpretation of principles of Findability, Accessibility, Interoperability, and Reusability (FAIR) in such context and demonstrates its implementation by describing the development of an end-to-end support infrastructure for preserving and accessing Universal FeynRules Output (UFO) models guided by the FAIR principles. UFO models are custom-made python libraries used by the HEP community for Monte Carlo simulation of collider physics events. Our framework provides simple but robust tools to preserve and access the UFO models and corresponding metadata in accordance with the FAIR principles.

Neubauer, Mark S.↗

NASA NTRSDate not supplied

NASA’s Safety, Reliability, and Mission Assurance Digital Future

The evolution from “document-centric” to “data-centric” and “model-centric” information leveraging structured data and model-based approaches is at the heart of digital engineering transformational efforts underway across industry and government. It is these approaches that pave the way for data lakes, Authoritative Sources of Truth (ASOTs), and systems- of-systems interoperability and the corresponding transformational benefits thereof. Such benefits include increased data availability, data access equity, data traceability, real-time analytics, batch analytics, and (most importantly) acceleration of the time-to-value and time-to-insights associated with engineering products and analyses. The longer-term benefits of reusability, customization and traceability are even more promising. For Safety and Mission Assurance (SMA), and Mission Success (SMS) activities; realization of such benefits is essential to provide engineers and analysts alike vital information when needed to support critical decision making throughout the entire life cycle. The SMA community often operate in parallel with engineering activities, for which information exchange with relevant context is paramount. Far too often, such information lags key decision points and/or is absent of the robust, integrated, knowledge needed, given inherent barriers associated with traditional document-centric means to data sharing, analysis, and reporting. This paper provides an overview of how NASA’s Office of Safety and Mission Assurance (OSMA) is evolving its policies, standards, guidance, and training to transform to eliminate such barriers, thus realizing the benefits emerging in this new digital era. A roadmap for achieving this digital future is presented along with key building blocks involving use and implementation of concepts such as: Objectives-Hierarchies, Objective-Driven Requirements, Accepted Standards, Safety and Assurance Cases, data digitization (i.e., ontologies, structured data, and model-centric data), FAIR (Findable, Accessible, Interoperable, & Reusable) and/or FAIRUST (Findable, Accessible, Interoperable, Reusable, Understandable, Secure, and Trusted) principles [1]. This paper also describes how OSMA, leveraging the Agency’s overall commitment to Digital Transformation (DT), is using the power of Policy, “Digital” Domain representation, Product Evolution, and Community Outreach and Engagement as part of a strategic vision and roadmap to evolve and transform its SMA organizations to become better able to serve its stakeholders and customers. Future publications will elaborate on these building blocks and deeper concepts.

Authoritative Source of Truth (ASOT),↗

DOE OSTI2023

KBase Credit Metadata Schema

As part of KBase’s commitment to promote open science, we offer users the ability to obtain a DOI (Digital Object Identifier) for their work, which can then be cited in an associated science publication. To further support the community-wide shift towards FAIR (Findable, Accessible, Interoperable, Reusable) data, KBase is expanding our data descriptors so that KBase DOIs have comprehensive citations for datasets, in addition to referencing publications or software used in the workflow. This helps encourage a culture of giving attribution for all research inputs and outputs; standard practice for literature, but still relatively new for software products or datasets. It also promotes open science by building trust that contributors get credit for their work, and accelerates knowledge discovery by supporting and incentivizing the release of data.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2022

Guidelines for Publicly Archiving Terrestrial Model Data to Enhance Usability, Intercomparison, and Synthesis

Scientific communities are increasingly publishing data to evaluate, accredit, and build on published research. However, guidelines for curating data for publication are sparse for model-related research, limiting the usability of archived simulation data. In particular, there are no established guidelines for archiving data related to terrestrial models that simulate land processes and their coupled interactions with climate. Terrestrial modelers have a unique set of challenges when publishing data due to the diversity of scientific domains, research questions, and the types and scales of simulations. Researchers in the U.S. Department of Energy’s (DOE) projects use a variety of multiscale models to advance robust predictions of terrestrial and subsurface ecosystem processes. Here, we synthesize archiving needs for data associated with different DOE models, and provide guidelines for publishing terrestrial model data components following FAIR (Findable, Accessible, Interoperable, Reusable) principles. The guidelines recommend archiving model inputs and testing data used in final simulation runs along with associated codes, workflow scripts, and metadata in public repositories. Researchers should consider archiving model outputs if they are within the storage limits of the repository. We also provide considerations for how to bundle files into different data publications with citable digital object identifiers. Finally, we identify repository features and tools that would enable storage and reuse of model data. Given the diversity of DOE terrestrial models, these guidelines are transferable to other model types and will enable efficient reuse of simulation data for purposes such as model intercomparisons, initialization, benchmarking, synthesis, and comparisons with field observations.

58 GEOSCIENCES↗

NASA NTRSDate not supplied

Automated Collection of Scientific Publications Linked to NASA Earth Science Datasets

NASA's Earth Observing System Data and Information System (EOSDIS) began dataset Digital Object Identifier (DOI) registration in 2012. The number of dataset DOIs registered as of January of 2023 exceeds 11,000. As the research community becomes aware of the importance of sharing data through Open Science and optimizing data reuse through Findability, Accessibility, Interoperability, and Reuse (FAIR) data management principles, datasets are increasingly being cited in scientific publications. When datasets are cited explicitly by DOI within published works, automated methods can be developed for collecting these published works from a variety of bibliometric sources. The coverage of the sources varies, so each source can collect citations that are only available within it. Using major citation databases such as Scopus and Web of Science, the Google Scholar search engine, the CrossRef Open Citation Index, and the dataset DOI registry DataCite, we present an automated workflow for dataset citation collection. By harvesting citations automatically, a citation library is created explicitly linking EOSDIS datasets to publications that cite them. Using Zotero, a free and open-source citation manager, we demonstrate how to access and browse this library by the tags indicating bibliometric sources, dataset DOI, and the dataset archive center. We also demonstrate temporary trends in the number of publications harvested from bibliometric sources.

Infometrics↗

NASA NTRS2009

Detection, Identification, Location, and Remote Sensing Using SAW RFID Sensor Tags

The Electromagnetic Systems Branch (EV4) of the Avionic Systems Division at NASA Johnson Space Center in Houston, TX is studying the utility of surface acoustic wave (SAW) radiofrequency identification (RFID) tags for multiple wireless applications including detection, identification, tracking, and remote sensing of objects on the lunar surface, monitoring of environmental test facilities, structural shape and health monitoring, and nondestructive test and evaluation of assets. For all of these applications, it is anticipated that the system utilized to interrogate the SAW RFID tags may need to operate at fairly long range and in the presence of considerable multipath and multiple-access interference. Towards that end, EV4 is developing a prototype SAW RFID wireless interrogation system for use in such environments called the Passive Adaptive RFID Sensor Equipment (PARSED) system. The system utilizes a digitally beam-formed planar receiving antenna array to extend range and provide direction-of-arrival information coupled with an approximate maximum-likelihood signal processing algorithm to provide near-optimal estimation of both range and temperature. The system is capable of forming a large number of beams within the field of view and resolving the information from several tags within each beam. The combination of both spatial and waveform discrimination provides the capability to track and monitor telemetry from a large number of objects appearing simultaneously within the field of view of the receiving array. In this paper, we will consider the application of the PARSEQ system to the problem of simultaneous detection, identification, localization, and temperature estimation for multiple objects. We will summarize the overall design of the PARSEQ system and present a detailed description of the design and performance of the signal detection and estimation algorithms incorporated in the system. The system is currently configured only to measure temperature (jointly with range and tag ID), but future versions will be revised to measure parameters other than temperature as SAW tags capable of interfacing with external sensors become available. It is anticipated that the estimation of arbitrary parameters measured using SAW-based sensors will be based on techniques very similar to the joint range and temperature estimation techniques described in this paper.

Barton, Richard J.↗

NASA NTRS1994

Locating buildings in aerial photos

Algorithms and techniques for use in the identification and location of large buildings in digitized copies of aerial photographs are developed and tested. The building data would be used in the simulation of objects located in the vicinity of an airport that may be detected by aircraft radar. Two distinct approaches are considered. Most building footprints are rectangular in form. The first approach studied is to search for right-angled corners that characterize rectangular objects and then to connect these corners to complete the building. This problem is difficult because many nonbuilding objects, such as street corners, parking lots, and ballparks often have well defined corners which are often difficult to distinguish from rooftops. Furthermore, rooftops come in a number of shapes, sizes, shadings, and textures which also limit the discrimination task. The strategy used linear sequences of different samples to detect straight edge segments at multiple angles and to determine when these segments meet at approximately right-angles with respect to each other. This technique is effective in locating corners. The test image used has a fairly rectangular block pattern oriented about thirty degrees clockwise from a vertical alignment, and the overall measurement data reflect this. However, this technique does not discriminate between buildings and other objects at an operationally suitable rate. In addition, since multiple paths are tested for each image pixel, this is a time consuming task. The process can be speeded up by preprocessing the image to locate the more optimal sampling paths. The second approach is to rely on a human operator to identify and select the building objects and then to have the computer determine the outline and location of the selected structures. When presented with a copy of a digitized aerial photograph, the operator uses a mouse and cursor to select a target building. After a button on the mouse is pressed, with the cursor fully within the perimeter of the building, the program scans from the position of the cursor to a perimeter position where a shift in grayscale is detected. Once at the perimeter, the process traces along it, around the building, until it eventually returns to the perimeter starting point. Spatial resolution limits cause the perimeter trace to be somewhat course so that a line straightening algorithm is employed. One result is that the building corner positions become more distinctly defined.

Green, James S.↗

NASA NTRS2007

Mini-Survey of SDSS OIII AGN with Swift

There is a common wisdom that every massive galaxy has a massive block hole. However, most of these objects either are not radiating or until recently have been very difficult to detect. The Sloan Digital Sky Survey (SDSS) data, based on the [OIII] line indicate that perhaps up to 20% of all galaxies may be classified as AGN a surprising result that must be checked with independent data. X-ray surveys have revealed that hard X-ray selected AGN show a strong luminosity dependent evolution and their luminosity function (LF) shows a dramatic break towards low Lx (at all z). This is seen for all types of AGN, but is stronger for the broad-line objects. In sharp contrast, the local LF of (optically-selected samples) shows no such break and no differences between narrow and broad-line objects. Assuming both hard X-ray and [OIII] emission are fair indicators of AGN activity, it is important to understand this discrepancy. We present here the results of a mini-survey done with Swift on a selected sample of SDSS selected AGN. The objects have been sampled at different L([OIII]) to check the relation with the Lx observed with Swift.

Angelina, Lorella↗

NASA NTRS2008

Mini-Survey on SDSS OIII AGN with Swift

The number of AGN and their luminosity distribution are crucial parameters for our understanding of the AGN phenomenon. There is a common wisdom that every massive galaxy has a massive black hole. However, most of these objects either are not radiating or until recently have been very difficult to detect. The Sloan Digital Sky Survey (SDSS) data, based on the [OIII] line indicate that perhaps up to 20% of all galaxies may be classified as AGN a surprising result that must be checked with independent data. X-ray surveys have revealed that hard X-ray selected AGN show a strong luminosity dependent evolution and their luminosity function (LF) shows a dramatic break towards low $L_X$ (at all $z$). This is seen for all types of AGN, but is stronger for the broad-line objects. In sharp contrast, the local LF of {it optically-selected samples} shows no such break and no differences between narrow and broad-line objects. Assuming both hard X-ray and [O{\sc iii}] emission are fair indicators of AGN activity, it is important to understand this discrepancy. We present here the results of a min-survey done with Swift on a selected sample of SDSS selected AGN. The objects have been sampled at different L([O{\sc iii}]) to check the relation with the $L_X$ observed with Swift.

Angelini, Lorella↗

NASA NTRSDate not supplied

Expanding Repository Data Available For Sharing and Knowledge Discovery

Some of the hardest space biology and space health challenges require data-intensive, bioinformatic, meta-analytical, and computer-assisted research approaches. These challenges include examining interdisciplinary space life science research across experiments and across interacting spaceflight hazards (radiation, altered gravity, confinement, hostile-closed environments, distance-duration from Earth). The approaches to confront these challenges involve mining multiple datasets simultaneously from various hierarchical organizations of biological complexity, all while concurrently evaluating how experimental design factors affect endpoints of standard assays. To enable this field, it is essential that principal investigators (PIs) submit data in a structure so it can be maximally re-used. The purpose of the NASA Ames Life Sciences Data Archive (ALSDA) is to collect, curate, and make publicly available all non-human space-relevant biological data. ALSDA must also ensure data are open-access, and maximally findable, accessible, interoperable, and reusable (FAIR). The scope of ALSDA data collected and submitted by PIs include subject and study design metadata, assay metadata parameters, raw and processed assay data, assay imagery/video, and subject-experienced mission data telemetry (radiation, temperature, humidity, acoustics, vibrations, etc.). ALSDA recently integrated into a collaborative group of Open Science projects to facilitate a suite of new tools and workflows that will improve data submission, accessibility, and reusability by implementing digital data submission agreements, and adopting the data management system originally developed by NASA GeneLab. ALSDA intends to bring current biological repository data and all future collected data into this new scientific data reuse reality. This new suite of tools will enable ALSDA to deploy a science curation system using scientific assay configurations for the data submission portal. It will capture essential assay parameters according to established standards in each sub-field within biology. The submission portal expedites data collection by enhancing ease of PI data submission, providing a user interface and specificity for which data is to be submitted. Data submissions can be brought into cutting-edge informatic analysis portals to enable mining of physiological, behavioral, biochemical, and imaging datasets in conjunction with ‘omics-level datasets. As ALSDA datasets are submitted, curated, and published (e.g., micro-computed tomography, histology, pulse oximetry, serum metabolites, magnetic resonance imaging, intraocular pressure, novel object recognition, etc.), the merging together of spaceflight data along this multi-hierarchical complexity of biology will enable informatics and data-intensive approaches resulting in knowledge discoveries across missions, space hazards, and biological disciplines.

Biology↗

NASA NTRSDate not supplied

Expanding Repository Data Available For Sharing And Knowledge Discovery

Some of the hardest space biology and space health challenges require data-intensive, bioinformatic, meta-analytical, and computer-assisted research approaches. These challenges include examining interdisciplinary space life science research across experiments and across interacting spaceflight hazards (radiation, altered gravity, confinement, hostile-closed environments, distance-duration from Earth). The approaches to confront these challenges involve mining multiple datasets simultaneously from various hierarchical organizations of biological complexity, all while concurrently evaluating how experimental design factors affect endpoints of standard assays. To enable this field, it is essential that principal investigators (PIs) submit data in a structure so it can be maximally re-used. The purpose of the NASA Ames Life Sciences Data Archive (ALSDA) is to collect, curate, and make publicly available all non-human space-relevant biological data. ALSDA must also ensure data are open-access, and maximally findable, accessible, interoperable, and reusable (FAIR). The scope of ALSDA data collected and submitted by PIs include subject and study design metadata, assay metadata parameters, raw and processed assay data, assay imagery/video, and subject-experienced mission data telemetry (radiation, temperature, humidity, acoustics, vibrations, etc.). ALSDA recently integrated into a collaborative group of Open Science projects to facilitate a suite of new tools and workflows that will improve data submission, accessibility, and reusability by implementing digital data submission agreements, and adopting the data management system originally developed by NASA GeneLab. ALSDA intends to bring current biological repository data and all future collected data into this new scientific data reuse reality. This new suite of tools will enable ALSDA to deploy a science curation system using scientific assay configurations for the data submission portal. It will capture essential assay parameters according to established standards in each sub-field within biology. The submission portal expedites data collection by enhancing ease of PI data submission, providing a user interface and specificity for which data is to be submitted. Data submissions can be brought into cutting-edge informatic analysis portals to enable mining of physiological, behavioral, biochemical, and imaging datasets in conjunction with ‘omics-level datasets. As ALSDA datasets are submitted, curated, and published (e.g., micro-computed tomography, histology, pulse oximetry, serum metabolites, magnetic resonance imaging, intraocular pressure, novel object recognition, etc.), the merging together of spaceflight data along this multi-hierarchical complexity of biology will enable informatics and data-intensive approaches resulting in knowledge discoveries across missions, space hazards, and biological disciplines.

life science↗

NASA NTRS2014

Space Shuttle and Hypersonic Entry

Fifty years of human spaceflight have been characterized by the aerospace operations of the Soyuz, of the Space Shuttle and, more recently, of the Shenzhou. The lessons learned of this past half decade are important and very significant. Particularly interesting is the scenario that is downstream from the retiring of the Space Shuttle. A number of initiatives are, in fact, emerging from in the aftermath of the decision to terminate the Shuttle program. What is more and more evident is that a new era is approaching: the era of the commercial usage and of the commercial exploitation of space. It is probably fair to say, that this is the likely one of the new frontiers of expansion of the world economy. To make a comparison, in the last 30 years our economies have been characterized by the digital technologies, with examples ranging from computers, to cellular phones, to the satellites themselves. Similarly, the next 30 years are likely to be characterized by an exponential increase of usage of extra atmospheric resources, as a result of more economic and efficient way to access space, with aerospace transportation becoming accessible to commercial investments. We are witnessing the first steps of the transportation of future generation that will drastically decrease travel time on our Planet, and significantly enlarge travel envelope including at least the low Earth orbits. The Steve Jobs or the Bill Gates of the past few decades are being replaced by the aggressive and enthusiastic energy of new entrepreneurs. It is also interesting to note that we are now focusing on the aerospace band, that lies on top of the aeronautical shell, and below the low Earth orbits. It would be a mistake to consider this as a known envelope based on the evidences of the flights of Soyuz, Shuttle and Shenzhou. Actually, our comprehension of the possible hypersonic flight regimes is bounded within really limited envelopes. The achievement of a full understanding of the hypersonic flight regimes will be a key enabler to facilitate the consolidation of the new emerging scenarios. The objective of this symposium is therefore to focus on lesson learned, to then analyze the main elements of those new scenarios, both from Institutional and Private sectors; and finally provide the leads for future collaboration opportunities between Italy, the United States and international partners, so to join profitably the opportunities offered by this new era of the aerospace technologies.

Campbell, Charles H.↗