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Extracting Natural Biosurfactants from Humus Deposits for Subsurface Engineering Applications

Environmentally benign, economical, and effective surfactants and additives are needed in engineering subsurface energy recovery processes. Biosurfactants have some advantages over chemically synthesized surfactants, but the high costs of microbial-biosynthesis limit their applications in subsurface engineering. In this work, we propose to use naturally occurring biosurfactants contained within Earth's readily available and inexpensive humus deposits for subsurface engineering applications. We collected humus samples of different types from four different regions, and developed a simple method for extracting natural biosurfactant (NBS) using only four common chemicals. The average NBS extraction yields are 16 ± 3% of the raw humus. No significant differences in elemental composition and functional group chemistry were found among the NBS extracted from humus of different origins, suggesting that any humus deposit can be used for NBS extraction. Measurements of interfacial tensions between air-water and supercritical (sc) CO 2 -water interfaces indicate that the NBS is a highly effective surfactant. NBS has good foaming ability. Preliminary tests with only 0.5 mass % NBS in the aqueous phase (no other additives) yielded scCO 2 -in-water foams of 83% foam quality. The apparent viscosity of 13 cP measured at a shear rate of 2320 s -1 indicates that much higher viscosities are achievable at lower shear rates. Finally, these results suggest that NBS merits further research and development for potential applications in subsurface energy production.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

ForCent model development and testing using the Enriched Background Isotope Study experiment

The ForCent forest ecosystem model was developed by making major revisions to the DayCent model including: (1) adding a humus organic pool, (2) incorporating a detailed root growth model, and (3) including plant phenological growth patterns. Observed plant production and soil respiration data from 1993 to 2000 were used to demonstrate that the ForCent model could accurately simulate ecosystem carbon dynamics for the Oak Ridge National Laboratory deciduous forest. A comparison of ForCent versus observed soil pool {sup 14}C signature ({Delta} {sup 14}C) data from the Enriched Background Isotope Study {sup 14}C experiment (1999-2006) shows that the model correctly simulates the temporal dynamics of the {sup 14}C label as it moved from the surface litter and roots into the mineral soil organic matter pools. ForCent model validation was performed by comparing the observed Enriched Background Isotope Study experimental data with simulated live and dead root biomass {Delta} {sup 14}C data, and with soil respiration {Delta} {sup 14}C (mineral soil, humus layer, leaf litter layer, and total soil respiration) data. Results show that the model correctly simulates the impact of the Enriched Background Isotope Study {sup 14}C experimental treatments on soil respiration {Delta} {sup 14}C values for the different soil organic matter pools. Model results suggest that a two-pool root growth model correctly represents root carbon dynamics and inputs to the soil. The model fitting process and sensitivity analysis exposed uncertainty in our estimates of the fraction of mineral soil in the slow and passive pools, dissolved organic carbon flux out of the litter layer into the mineral soil, and mixing of the humus layer into the mineral soil layer.

09 BIOMASS FUELS↗

Abiotic Bromination of Soil Organic Matter

Biogeochemical transformations of plant-derived soil organic matter (SOM) involve complex abiotic and microbially mediated reactions. One such reaction is halogenation, which occurs naturally in the soil environment and has been associated with enzymatic activity of decomposer organisms. Building on a recent finding that naturally produced organobromine is ubiquitous in SOM, we hypothesized that inorganic bromide could be subject to abiotic oxidations resulting in bromination of SOM. Through lab-based degradation treatments of plant material and soil humus, we have shown that abiotic bromination of particulate organic matter occurs in the presence of a range of inorganic oxidants, including hydrogen peroxide and assorted forms of ferric iron, producing both aliphatic and aromatic forms of organobromine. Bromination of oak and pine litter is limited primarily by bromide concentration. Fresh plant material is more susceptible to bromination than decayed litter and soil humus, due to a labile pool of mainly aliphatic compounds that break down during early stages of SOM formation. As the first evidence of abiotic bromination of particulate SOM, this study identifies a mechanistic source of the natural organobromine in humic substances and the soil organic horizon. Formation of organobromine through oxidative treatments of plant material also provides insights into the relative stability of aromatic and aliphatic components of SOM.

54 ENVIRONMENTAL SCIENCES↗

Organochlorine Turnover in Forest Ecosystems: The Missing Link in the Terrestrial Chlorine Cycle

Research in the last 20 years has shown that chlorine undergoes transformations between inorganic and organic forms as part of a complex biogeochemical cycle in terrestrial systems. Natural organochlorine production appears to be associated with the decomposition of plant material on the soil surface, though the chlorine cycle budget implies that a proportion of natural organochlorine enters soil through plant litter and atmospheric deposition as well. Organochlorine compounds may form through biotic and abiotic pathways, but the rates and magnitude of production in the field remain undefined. We have performed a time-dependent trace of chlorine concentration through forest ecosystems, revealing distinct fractions of naturally produced organochlorine in plant biomass. Aliphatic organochlorine constitutes an intrinsic component of healthy leaves that persists through senescence and humification of the plant material, making a substantial contribution to the pool of soil organochlorine. Plant leaves also contain soluble aromatic organochlorine compounds that leach from leaf litter during early decay stages. As decay progresses, high concentrations of insoluble aromatic organochlorine accrue in the humus, through de novo production as well as adsorption. The rates of aromatic organochlorine production and degradation vary seasonally and conversely. This study presents the first unambiguous evidence that there exist multiple pools of chlorinated organic matter in the soil environment and that leaf litter deposition makes a significant and refractory contribution to the soil organochlorine pool, providing key insights into the biogeochemical chlorine cycle.

09 BIOMASS FUELS↗

Charge fingerprint in relation to mineralogical composition of Quaternary volcanic ash along a climatic gradient on Java Island, Indonesia

We studied the relationship between the mineralogical composition and surface charge properties of representative Quaternary volcanic ash soils, classified as Andosols, along an East-West sequence on Java Island in Indonesia. Most of the studied soils have a limited ability to retain cations under their forest or grass vegetation. The surface charge properties of these soils are mainly controlled by the relative amounts of nanocrystalline minerals, mainly allophane and to a lesser extent ferrihydrite, in addition to organic matter (especially Al- and Fe-humus complexes), crystalline Fe oxides, gibbsite, and layer silicates (e.g., halloysite, smectite, kaolinite). Based on the composition of their clay fraction, the studied soils can be grouped in two categories: (i) allophane-poor Andosols of East Java, which contain a considerable amount of either halloysite or a mixture of 2:1 and 1:1 layer silicates; and (ii) allophane-rich Andosols dominated either by kaolinitic clays, gibbsitic material or a mixture of 1:1 and 2:1 layer silicate clays, which are more prominent in West and also occur in Central Java. Differences between both groups are attributed mainly to more pronounced seasonality in East Java, with variations in parent ash composition, becoming more acidic from east to west, as subordinate factor. The more severely leaching environment in West Java results in a higher degree of desilication , which led to a higher point of zero net charge (PZNC) and pHo in the allophane-rich soils. The soils belonging to this group exhibit extreme variable charge characteristics, and a net ‘positive’ variable surface charge at soil pH.

Utami, S. R.↗

Application of the Environmentally Non-Aggressive Dissolvents to Mobilize Metals in Tailings in the Norilsk Region

Under analysis is on-site extractability of nonferrous and noble metals from tailings by leaching with natural reagents (humus acids, water, lignin). Redistribution of nonferrous and noble metals in a percolation bed made of old tailings in the Norilsk copper–nickel ore field is studied. Kinetics of dissolving of nonferrous and noble metals under capillary ascensional percolation is investigated. It is shown that directional capillary percolation of solutions is applicable to extraction of nonferrous and noble metals under long-term mining waste storage.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Metagenomic analysis of the microbiota in the highly compartmented hindguts of six wood- or soil-feeding higher termites

Termites are important contributors to carbon and nitrogen cycling in tropical ecosystems. Higher termites digest lignocellulose in various stages of humification with the help of an entirely prokaryotic microbiota housed in their compartmented intestinal tract. Previous studies revealed fundamental differences in community structure between compartments, but the functional roles of individual lineages in symbiotic digestion are mostly unknown. Furthermore, we conducted a highly resolved analysis of the gut microbiota in six species of higher termites that feed on plant material at different levels of humification. Combining amplicon sequencing and metagenomics, we assessed similarities in community structure and functional potential between the major hindgut compartments (P1, P3, and P4). Cluster analysis of the relative abundances of orthologous gene clusters (COGs) revealed high similarities among woodand litter-feeding termites and strong differences to humivorous species. However, abundance estimates of bacterial phyla based on 16S rRNA genes greatly differed from those based on protein-coding genes. In conclusion, the community structure and functional potential of the microbiota in individual gut compartments are clearly driven by the digestive strategy of the host. The metagenomics libraries obtained in this study provide the basis for future studies that elucidate the fundamental differences in the symbiont-mediated breakdown of lignocellulose and humus by termites of different feeding groups. Furthermore, the high proportion of uncultured bacterial lineages in all samples calls for a reference-independent approach for the correct taxonomic assignment of protein-coding genes.

59 BASIC BIOLOGICAL SCIENCES↗

Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments

Despite more than three decades of progress, efficient nucleic acid extraction from microbial communities has remained difficult, particularly from clay environments. Lysis with concentrated guanidine followed by concentrated sodium phosphate extraction supported DNA and RNA recovery from high iron, low humus content clay. Alterating the extraction pH or using other ionic solutions (Na 2 SO 4 and NH 4 H 2 PO 4 ) yielded no detectable nucleic acid. DNA recovered using a lysis solution with 500 mM phosphate buffer (PB) followed by a 1 M PB wash was 15.22±2.33 g DNA/g clay, with most DNA consisting of >20 Kb fragments, compared to 2.46±0.25 g DNA/g clay with the Powerlyzer soil DNA system (MoBio). Increasing [PB] in the lysis reagent coincided with increasing DNA fragment length. Rarefaction plots based on16S rRNA (V1/V3 region) pyrosequencing libraries from A-horizon and clay soils showed an ~80% and ~400% larger accessed diversity compared to a previous grinding protocol or the Powerlyzer soil DNA system, respectively. The observed diversity from the Firmicutes showed the strongest increase with >3-fold more bacterial species recovered using this system. Additionally, some OTU's having more than 100 sequences in these libraries were absent in samples extracted using the PowerLyzer reagents or the previous lysis method.

59 BASIC BIOLOGICAL SCIENCES↗

Organic matter and soil structure in the Everglades Agricultural Area

This publication pertains to management of organic soils (Histosols) in the Everglades Agricultural Area (EAA). These former wetland soils are a major resource for efficient agricultural production and are important globally for their high organic matter content. Recognition of global warming has led to considerable interest in soils as a repository for carbon. Soils rich in organic matter essentially sequester or retain carbon in the profile and can contribute directly to keeping that sequestered carbon from entering the atmosphere. Identification and utilization of management practices that minimize the loss of carbon from organic soils to the atmosphere can minimize effects on global warming and increase the longevity of subsiding Histosols for agricultural use. Understanding and predicting how these muck soils will respond to current and changing land uses will help to manage soil carbon. The objectives of this document are to: a. Discuss organic soil oxidation relative to storing or releasing carbon and nitrogen b. Evaluate effects of cultivation (compare structure for sugarcane vs. uncultivated soil) Based upon the findings from the land-use comparison (sugarcane or uncultivated), organic carbon was higher with cultivation in the lower depths. There is considerable potential for minimum tillage and residue management to further enhance carbon sequestration in the sugarcane system. Carbon sequestration is improved and soil subsidence is slowed with sugarcane production, and both of these are positive outcomes. Taking action to increase or maintain carbon sequestration appears to be appropriate but may introduce some risk to farming operations. Additional management methods are needed to reduce this risk. For both the longevity of these organic soils and from a global perspective, slowing subsidence through BMP implementation makes sense. Since these BMPs also have considerable societal benefit, it remains to be seen if society will help to offset a part or all of the additional risk through some form of cost-sharing program or carbon credits trading. In general, the subsidence throughout the EAA has been slowed because of higher water table management and implementation of other selected BMPs. In addition, the comparison of soil with different land uses shows that the humification rate, conversion of organic matter from peat to humus, has changed. Another likely factor is a relative increase in the mineral content of soil as the organic constituents are lost through subsidence.

54 ENVIRONMENTAL SCIENCES↗

Introduction to Carbon Sensing in Soil. A surface-level review of traditional and alternative methods of soil carbon measurement

Soil carbon can be divided into two categories: organic and inorganic. Soil inorganic carbon (SIC) is present in carbonate minerals in the soil and is often found in dry, arid regions. Examples of SIC include calcium carbonate (CaCO 3 ) and magnesium carbonate (MgCO 3 ), both of which play important roles in soil health. Soil organic carbon (SOC) is found in fresh plant matter (available SOC) and as humus or charcoal (inert SOC). Both types of carbon act as storage in the global carbon cycle. As a carbon sink, soil carbon has the potential to store carbon that would otherwise remain in the atmosphere as CO 2 , one of the primary greenhouse emissions. As such, soil is under increasing attention and research to be used as a sequestration (i.e., isolation) method to reduce the amount of carbon in the atmosphere. This type of carbon sequestration is called biological sequestration. SOC typically stores carbon for several decades (depending on decomposition rates) while SIC can store carbon for more than 70,000 years. Common sequestration techniques for SOC usually fall under the category of land management: planting perennials, keeping plant residue and composting, reducing tilling, and other agricultural practices that vary by region. SIC sequestration through carbonates naturally takes thousands of years but there have been studies to increase SIC sequestration through the addition of silicates.

47 OTHER INSTRUMENTATION↗