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Helicity fluctuations in incompressible turbulent flows

Results from direct numerical simulations of several homogeneous flows and fully developed turbulent channel flow indicate that the probability distribution function (pdf) of relative helicity density exhibits at most a 20 percent deviation from a flat distribution. Isotropic flows exhibit a slight helical nature but the presence of mean strain in homogeneous turbulence suppresses helical behavior. All the homogeneous turbulent flows studied show no correlation between relative helicity density and the dissipation of turbulent kinetic energy. The channel flow simulations indicate that, except for low-dissipation regions near the outer edge of the buffer layer, there is no tendency for the flow to be helical. The strong peaks in the relative helicity density pdf and the association of these peaks with regions of low dissipation found in previous simulations by Pelz et al.(1985) are not observed.

Rogers, Michael M.↗

Evidence for helical kink instability in the Venus magnetic flux ropes

Empirical models of the magnetic field structure of flux ropes found in the Venus ionosphere are seen as suggesting that the ropes are unstable to long-wavelength (more than 100 km) helical-kink perturbations. The onset of such an instability can explain the apparent volume distribution of flux ropes with altitude, as well as their orientation as a function of altitude. In the subsolar region, the fraction of volume occupied by flux ropes increases from approximately 20 percent at high altitudes to more than 50 percent at low altitudes; this is a greater increase than would be expected if ropes convect downward as simple straight horizontal cylinders. The helical kink instability raises the fractional volume occupied by ropes by turning the originally straight, horizontal flux tubes into corkscrew-shaped structures as they convect to lower altitudes. It is noted that this instability also explains why high altitude ropes tend to be horizontal and low altitude ropes appear to have almost any orientation.

Elphic, R. C.↗

The mirror and ion cyclotron anisotropy instabilities

The linear dispersion equation for fully electromagnetic waves and instabilities at arbitrary directions of propagation relative to a background magnetic field B(0) in a homogeneous Vlasov plasma is solved numerically for bi-Maxwellian particle distributions. For isotropic plasmas the dispersion and damping of the three modes below the proton cyclotron frequency are studied as functions of Beta(i) and T(e)/T(i). The transport ratios of helicity, cross-helicity, Alfven ratio, compressibility, and parallel compressibility are defined. Under the condition that the proton temperature perpendicular to B(0) is greater than the parallel temperature, the growth rates and transport ratios of the mirror instability and the ion cyclotron anisotropy instability are examined and compared. Both the proton parallel compressibility and the proton Alfven ratio are significantly different for the two growing modes.

Gary, S. P.↗

The prokaryote-to-eukaryote transition reflected in the evolution of the V/F/A-ATPase catalytic and proteolipid subunits

Changes in the primary and quarternary structure of vacuolar and archaeal type ATPases that accompany the prokaryote-to-eukaryote transition are analyzed. The gene encoding the vacuolar-type proteolipid of the V-ATPase from Giardia lamblia is reported. Giardia has a typical vacuolar ATPase as observed from the common motifs shared between its proteolipid subunit and other eukaryotic vacuolar ATPases, suggesting that the former enzyme works as a hydrolase in this primitive eukaryote. The phylogenetic analyses of the V-ATPase catalytic subunit and the front and back halves of the proteolipid subunit placed Giardia as the deepest branch within the eukaryotes. Our phylogenetic analysis indicated that at least two independent duplication and fusion events gave rise to the larger proteolipid type found in eukaryotes and in Methanococcus. The spatial distribution of the conserved residues among the vacuolar-type proteolipids suggest a zipper-type interaction among the transmembrane helices and surrounding subunits of the V-ATPase complex. Important residues involved in the function of the F-ATP synthase proteolipid have been replaced during evolution in the V-proteolipid, but in some cases retained in the archaeal A-ATPase. Their possible implication in the evolution of V/F/A-ATPases is discussed.

NASA Discipline Exobiology↗

Spring Tire

The spring tire is made from helical springs, requires no air or rubber, and consumes nearly zero energy. The tire design provides greater traction in sandy and/or rocky soil, can operate in microgravity and under harsh conditions (vastly varying temperatures), and is non-pneumatic. Like any tire, the spring tire is approximately a toroidal-shaped object intended to be mounted on a transportation wheel. Its basic function is also similar to a traditional tire, in that the spring tire contours to the surface on which it is driven to facilitate traction, and to reduce the transmission of vibration to the vehicle. The essential difference between other tires and the spring tire is the use of helical springs to support and/or distribute load. They are coiled wires that deform elastically under load with little energy loss.

Asnani, Vivake M.↗

High-performance mass storage system for workstations

Reduced Instruction Set Computer (RISC) workstations and Personnel Computers (PC) are very popular tools for office automation, command and control, scientific analysis, database management, and many other applications. However, when using Input/Output (I/O) intensive applications, the RISC workstations and PC's are often overburdened with the tasks of collecting, staging, storing, and distributing data. Also, by using standard high-performance peripherals and storage devices, the I/O function can still be a common bottleneck process. Therefore, the high-performance mass storage system, developed by Loral AeroSys' Independent Research and Development (IR&D) engineers, can offload a RISC workstation of I/O related functions and provide high-performance I/O functions and external interfaces. The high-performance mass storage system has the capabilities to ingest high-speed real-time data, perform signal or image processing, and stage, archive, and distribute the data. This mass storage system uses a hierarchical storage structure, thus reducing the total data storage cost, while maintaining high-I/O performance. The high-performance mass storage system is a network of low-cost parallel processors and storage devices. The nodes in the network have special I/O functions such as: SCSI controller, Ethernet controller, gateway controller, RS232 controller, IEEE488 controller, and digital/analog converter. The nodes are interconnected through high-speed direct memory access links to form a network. The topology of the network is easily reconfigurable to maximize system throughput for various applications. This high-performance mass storage system takes advantage of a 'busless' architecture for maximum expandability. The mass storage system consists of magnetic disks, a WORM optical disk jukebox, and an 8mm helical scan tape to form a hierarchical storage structure. Commonly used files are kept in the magnetic disk for fast retrieval. The optical disks are used as archive media, and the tapes are used as backup media. The storage system is managed by the IEEE mass storage reference model-based UniTree software package. UniTree software will keep track of all files in the system, will automatically migrate the lesser used files to archive media, and will stage the files when needed by the system. The user can access the files without knowledge of their physical location. The high-performance mass storage system developed by Loral AeroSys will significantly boost the system I/O performance and reduce the overall data storage cost. This storage system provides a highly flexible and cost-effective architecture for a variety of applications (e.g., realtime data acquisition with a signal and image processing requirement, long-term data archiving and distribution, and image analysis and enhancement).

Chiang, T.↗

Shear-Sensitive Liquid Crystal Coating Method: Surface-Inclination Effects on Shear Vector Measurements

The shear-sensitive liquid crystal coating (SSLCC) method is an image-based technique for both visualizing dynamic surface-flow phenomena, such as transition and separation, and for measuring the continuous shear-stress vector distribution acting on an aerodynamic surface. Under proper lighting and viewing conditions (discussed below), the coating changes color in response to an applied aerodynamic shear. This color-change response is continuous and reversible, with a response time of milliseconds, and is a function of both the shear magnitude and the shear vector orientation relative to the observer. The liquid crystal phase of matter is a weakly-ordered, viscous, non-Newtonian fluid state that exists between the nonuniform liquid phase and the ordered solid phase of certain organic compounds. Cholesteric liquid crystal compounds possess a helical molecular arrangement that selectively scatters white light, incident along the helical axis, as a three-dimensional spectrum. This property is linked to the helical pitch length, which is within the range of wavelengths in the visible spectrum. The pitch length, and hence the wavelength of the scattered light, is influenced by shear stress normal to the helical axis. This unique optical property produces a measurable color change in response to an applied shearing force. The full-surface shear stress vector measurement method, developed at NASA-Ames, is schematically illustrated. As with the visualization method, the coated test surface is illuminated from the normal direction with white light and the camera is positioned at an above-plane view angle of approximately 30 deg. Experiments have been initiated at NASA Ames to begin the process of quantifying surface-inclination (surface-curvature) effects on shear vector measurement accuracy. In preliminary experiments, surface-inclination angles theta(sub x), theta(sub y) of 0, +/-5, +/-10, and +/-15 deg were employed. In this arrangement, white-light illumination was positioned normal to the untilted test surface, and the camera above-plane view angle was set at 30 deg relative to the untilted test surface. As can be seen, vector-aligned lambda(sub d) values showed no dependence on theta(sub x) or theta(sub y) for absolute values of these tilt angles is less than or equal to 15 deg. Acquisition and analyses of full-surface color images are presently underway to definitively document the insensitivity limits of the shear vector measurement methodology to surface-slope variations.

Reda, Daniel C.↗

Statistical Mechanics of Turbulent Dynamos

Incompressible magnetohydrodynamic (MHD) turbulence and magnetic dynamos, which occur in magnetofluids with large fluid and magnetic Reynolds numbers, will be discussed. When Reynolds numbers are large and energy decays slowly, the distribution of energy with respect to length scale becomes quasi-stationary and MHD turbulence can be described statistically. In the limit of infinite Reynolds numbers, viscosity and resistivity become zero and if these values are used in the MHD equations ab initio, a model system called ideal MHD turbulence results. This model system is typically confined in simple geometries with some form of homogeneous boundary conditions, allowing for velocity and magnetic field to be represented by orthogonal function expansions. One advantage to this is that the coefficients of the expansions form a set of nonlinearly interacting variables whose behavior can be described by equilibrium statistical mechanics, i.e., by a canonical ensemble theory based on the global invariants (energy, cross helicity and magnetic helicity) of ideal MHD turbulence. Another advantage is that truncated expansions provide a finite dynamical system whose time evolution can be numerically simulated to test the predictions of the associated statistical mechanics. If ensemble predictions are the same as time averages, then the system is said to be ergodic; if not, the system is nonergodic. Although it had been implicitly assumed in the early days of ideal MHD statistical theory development that these finite dynamical systems were ergodic, numerical simulations provided sufficient evidence that they were, in fact, nonergodic. Specifically, while canonical ensemble theory predicted that expansion coefficients would be (i) zero-mean random variables with (ii) energy that decreased with length scale, it was found that although (ii) was correct, (i) was not and the expected ergodicity was broken. The exact cause of this broken ergodicity was explained, after much investigation, by greatly extending the statistical theory of ideal MHD turbulence. The mathematical details of broken ergodicity, in fact, give a quantitative explanation of how coherent structure, dynamic alignment and force-free states appear in turbulent magnetofluids. The relevance of these ideal results to real MHD turbulence occurs because broken ergodicity is most manifest in the ideal case at the largest length scales and it is in these largest scales that a real magnetofluid has the least dissipation, i.e., most closely approaches the behavior of an ideal magnetofluid. Furthermore, the effects grow stronger when cross and magnetic helicities grow large with respect to energy, and this is exactly what occurs with time in a real magnetofluid, where it is called selective decay. The relevance of these results found in ideal MHD turbulence theory to the real world is that they provide at least a qualitative explanation of why confined turbulent magnetofluids, such as the liquid iron that fills the Earth's outer core, produce stationary, large-scale magnetic fields, i.e., the geomagnetic field. These results should also apply to other planets as well as to plasma confinement devices on Earth and in space, and the effects should be manifest if Reynolds numbers are high enough and there is enough time for stationarity to occur, at least approximately. In the presentation, details will be given for both theoretical and numerical results, and references will be provided.

Shebalin, John V.↗

MHD Turbulence and Magnetic Dynamos

Incompressible magnetohydrodynamic (MHD) turbulence and magnetic dynamos, which occur in magnetofluids with large fluid and magnetic Reynolds numbers, will be discussed. When Reynolds numbers are large and energy decays slowly, the distribution of energy with respect to length scale becomes quasi-stationary and MHD turbulence can be described statistically. In the limit of infinite Reynolds numbers, viscosity and resistivity become zero and if these values are used in the MHD equations ab initio, a model system called ideal MHD turbulence results. This model system is typically confined in simple geometries with some form of homogeneous boundary conditions, allowing for velocity and magnetic field to be represented by orthogonal function expansions. One advantage to this is that the coefficients of the expansions form a set of nonlinearly interacting variables whose behavior can be described by equilibrium statistical mechanics, i.e., by a canonical ensemble theory based on the global invariants (energy, cross helicity and magnetic helicity) of ideal MHD turbulence. Another advantage is that truncated expansions provide a finite dynamical system whose time evolution can be numerically simulated to test the predictions of the associated statistical mechanics. If ensemble predictions are the same as time averages, then the system is said to be ergodic; if not, the system is nonergodic. Although it had been implicitly assumed in the early days of ideal MHD statistical theory development that these finite dynamical systems were ergodic, numerical simulations provided sufficient evidence that they were, in fact, nonergodic. Specifically, while canonical ensemble theory predicted that expansion coefficients would be (i) zero-mean random variables with (ii) energy that decreased with length scale, it was found that although (ii) was correct, (i) was not and the expected ergodicity was broken. The exact cause of this broken ergodicity was explained, after much investigation, by greatly extending the statistical theory of ideal MHD turbulence. The mathematical details of broken ergodicity, in fact, give a quantitative explanation of how coherent structure, dynamic alignment and force-free states appear in turbulent magnetofluids. The relevance of these ideal results to real MHD turbulence occurs because broken ergodicity is most manifest in the ideal case at the largest length scales and it is in these largest scales that a real magnetofluid has the least dissipation, i.e., most closely approaches the behavior of an ideal magnetofluid. Furthermore, the effects grow stronger when cross and magnetic helicities grow large with respect to energy, and this is exactly what occurs with time in a real magnetofluid, where it is called selective decay. The relevance of these results found in ideal MHD turbulence theory to the real world is that they provide at least a qualitative explanation of why confined turbulent magnetofluids, such as the liquid iron that fills the Earth's outer core, produce stationary, large-scale magnetic fields, i.e., the geomagnetic field. These results should also apply to other planets as well as to plasma confinement devices on Earth and in space, and the effects should be manifest if Reynolds numbers are high enough and there is enough time for stationarity to occur, at least approximately. In the presentation, details will be given for both theoretical and numerical results, and references will be provided.

Shebalin, John V↗

Measurements and Computations of Natural Transition on the NASA Juncture-Flow Model with a Symmetric Wing

Experiments were performed in the 14- by 22-Foot Subsonic Tunnel to assess natural transition on the symmetric-airfoil wings of the NASA Juncture-Flow Model. Infrared thermography was used to visualize the heating on the upper surface of both wings of the full-span model, and on the fuselage, for angles of incidence ranging from -10° to 10° at a fixed Reynolds number of 2.4E6 based on the chord length at the wing planform break. The fuselage boundary layer transitioned well upstream of the wing-root leading edge for all conditions. Transition fronts were identified by a steep rise in the surface temperature, and the transition coordinates were transformed from an image-based to a body-fixed system. Additionally, the state of the boundary layer was estimated at pressure ports distributed on the wings through observation of the pressure coefficient as a function of the angle of incidence. For increasing angles of incidence, the transition front was observed to advance upstream, in a mostly spanwise-uniform fashion, from near midchord at α = 0°; however, for increasingly negative angles of incidence, the transition front first receded and then advanced in a nonuniform jagged manner that is typically observed with stationary crossflow. The transition wedges first appeared inboard of the wing break and then spread outboard to near the tip by α = -6°. The upstream shift in transition at positive angles of incidence and the outboard progression of crossflow-dominated transition at increasingly negative angles of incidence are consistent with trends identified in a computational assessment of the boundary-layer transition based on both linear stability analysis and Reynolds-averaged-Navier-Stokes-based transition models. The stability results obtained from the Langley Stability and Transition Analysis Code were used to recalibrate a dual N-factor criterion, which allowed for the prediction of transition fronts that showed excellent agreement with the experiment. The Reynolds-averaged-Navier-Stokes-based models, from the NASA OVERFLOW 2.3 solver, that accounted for the crossflow instability showed mixed results in comparison with the experiment, with the helicity-based Langtry-Menter model performing the best. The experimental data, particularly the cases involving strong influence from both Tollmien-Schlichting and crossflow instabilities, will be valuable for the continued validation and improvement of transition models.

Boundary layer transition↗

Measurements and Computations of Natural Transition on the NASA Juncture-Flow Model with a Symmetric Wing

Experiments were performed in the 14- by 22-Foot Subsonic Tunnel to assess natural transition on the symmetric-airfoil wings of the NASA Juncture-Flow Model. Infrared thermography was used to visualize the heating on the upper surface of both wings of the full-span model, and on the fuselage, for angles of incidence ranging from -10° to 10° at a fixed Reynolds number of 2.4E6 based on the chord length at the wing planform break. The fuselage boundary layer transitioned well upstream of the wing-root leading edge for all conditions. Transition fronts were identified by a steep rise in the surface temperature, and the transition coordinates were transformed from an image-based to a body-fixed system. Additionally, the state of the boundary layer was estimated at pressure ports distributed on the wings through observation of the pressure coefficient as a function of the angle of incidence. For increasing angles of incidence, the transition front was observed to advance upstream, in a mostly spanwise-uniform fashion, from near midchord at α = 0°; however, for increasingly negative angles of incidence, the transition front first receded and then advanced in a nonuniform jagged manner that is typically observed with stationary crossflow. The transition wedges first appeared inboard of the wing break and then spread outboard to near the tip by α = -6°. The upstream shift in transition at positive angles of incidence and the outboard progression of crossflow-dominated transition at increasingly negative angles of incidence are consistent with trends identified in a computational assessment of the boundary-layer transition based on both linear stability analysis and Reynolds-averaged-Navier-Stokes-based transition models. The stability results obtained from the Langley Stability and Transition Analysis Code were used to recalibrate a dual N-factor criterion, which allowed for the prediction of transition fronts that showed excellent agreement with the experiment. The Reynolds-averaged-Navier-Stokes-based models, from the NASA OVERFLOW 2.3 solver, that accounted for the crossflow instability showed mixed results in comparison with the experiment, with the helicity-based Langtry-Menter model performing the best. The experimental data, particularly the cases involving strong influence from both Tollmien-Schlichting and crossflow instabilities, will be valuable for the continued validation and improvement of transition models.

boundary layer transition↗

Measurements and Computations of Natural Transition on the NASA Juncture-Flow Model with a Symmetric Wing

Experiments were performed in the 14- by 22-Foot Subsonic Tunnel to assess natural transition on the symmetric-airfoil wings of the NASA Juncture-Flow Model. Infrared thermography was used to visualize the heating on the upper surface of both wings of the full-span model, and on the fuselage, for angles of incidence ranging from -10° to 10° at a fixed Reynolds number of 2.4E6 based on the chord length at the wing planform break. The fuselage boundary layer transitioned well upstream of the wing-root leading edge for all conditions. Transition fronts were identified by a steep rise in the surface temperature, and the transition coordinates were transformed from an image-based to a body-fixed system. Additionally, the state of the boundary layer was estimated at pressure ports distributed on the wings through observation of the pressure coefficient as a function of the angle of incidence. For increasing angles of incidence, the transition front was observed to advance upstream, in a mostly spanwise-uniform fashion, from near midchord at α = 0°; however, for increasingly negative angles of incidence, the transition front first receded and then advanced in a nonuniform jagged manner that is typically observed with stationary crossflow. The transition wedges first appeared inboard of the wing break and then spread outboard to near the tip by α = -6°. The upstream shift in transition at positive angles of incidence and the outboard progression of crossflow-dominated transition at increasingly negative angles of incidence are consistent with trends identified in a computational assessment of the boundary-layer transition based on both linear stability analysis and Reynolds-averaged-Navier-Stokes-based transition models. The stability results obtained from the Langley Stability and Transition Analysis Code were used to recalibrate a dual N-factor criterion, which allowed for the prediction of transition fronts that showed excellent agreement with the experiment. The Reynolds-averaged-Navier-Stokes-based models, from the NASA OVERFLOW 2.3 solver, that accounted for the crossflow instability showed mixed results in comparison with the experiment, with the helicity-based Langtry-Menter model performing the best. The experimental data, particularly the cases involving strong influence from both Tollmien-Schlichting and crossflow instabilities, will be valuable for the continued validation and improvement of transition models.

boundary layer transition↗

Fluorescence Studies of Protein Crystal Nucleation

We have postulated that, in the case of tetragonal chicken egg white lysozyme, crystal growth occurs by the addition of pre-critical nuclei sized n-mers that form in the bulk solution, and that the n-mer growth units were multiples of the tetrameric 4(sub 3) helical structure. These have the strongest intermolecular bonds in the crystal and are therefore likely to be the first species formed. High resolution AFM studies provide strong supporting evidence for this model, but the data also suggest that the actual species in solution may not be identical in structure to that found in the crystal. We are using fluorescence resonance energy transfer (FRET) to study the initial solution phase self-assembly process, using covalent fluorescent derivatives which crystallize in the characteristic P4(sub 3)2(sub 1)2(sub 1) space group. FRET studies are being carried out between the cascade blue (CB-lys, donor, Ex(sub max) 366 nm, Em 420 nm) and lucifer yellow (LY-lys, acceptor, Ex(sub max) 430 nm, Em 528 nm) asp101 derivatives. The estimated R(sub 0) for this probe pair, the distance where 50% of the donor energy is transferred to the acceptor, is approx. 1.2 nm, compared to 2.2 nm between the side chain carboxyls of adjacent asp101's in the crystalline 4(sub 3) helix. The short donor lifetime of 2.80 ns (chi(sup 2) = 0.644), coupled with the large average distances between the molecules (greater than or equal to 50 nm) in solution, ensure that any energy transfer observed is not due to random diffusive interactions. Lifetime data show that CB-lys has a single lifetime when it is the only species in solution. Similarly, LY-lys also exhibits a single lifetime of 4.63 ns (chi(sup 2) = 0.42) when alone in solution. Addition of LY-lys to CB-lys results in the appearance of a third lifetime component of 0.348ns for the CB-lys. The fractional intensities of the different species present can be used to estimate the distribution of monomer and n-mers in solution. The self-association process is a function of the protein concentration relative to the saturation concentration, and observing it in dilute solution (conc. less than or equal to 10(exp -5)M) requires that the experiments be performed under low solubility conditions, i.e., low temperatures and high salt concentrations. Data from preliminary steady state FRET studies with N-terminal bound pyrene acetic acid (PAA-lys, donor, Ex 340 nm, Em 376 nm) and asp101 LY-lys as an acceptor showed a consistent trend of decreasing donor fluorescence intensity with increasing total protein concentration. The FRET data have been obtained at pH 4.6, 0.1M NaAc buffer, at 5 and 7% NaCl, 4 C. The corresponding C(sub sat) values are 0.471 and 0.362 mg/ml (approx. 3.3 and approx. 2.5 x 10(exp -5)M respectively). The donor fluorescence decrease is more pronounced at7% NaCl, consistent with the expected increased intermolecular interactions at higher salt concentrations as reflected in the lower solubility. Results from these and other ongoing studies will be discussed in conjunction with an emerging model for how tetragonal lysozyme crystals nucleate and the relevance of that model to other proteins.

Pusey, Marc↗