Computational modeling of human adult neurogenesis - information theoretic analysis of biologically realistic dentate gyrus networks.
Abstract not provided.
Vineyard, Craig Michael↗
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Parametric sensitivity analysis for stochastic molecular systems using information theoretic metrics
In this paper, we present a parametric sensitivity analysis (SA) methodology for continuous time and continuous space Markov processes represented by stochastic differential equations. Particularly, we focus on stochastic molecular dynamics as described by the Langevin equation. The utilized SA method is based on the computation of the information-theoretic (and thermodynamic) quantity of relative entropy rate (RER) and the associated Fisher information matrix (FIM) between path distributions, and it is an extension of the work proposed by Y. Pantazis and M. A. Katsoulakis [J. Chem. Phys. 138, 054115 (2013)]. A major advantage of the pathwise SA method is that both RER and pathwise FIM depend only on averages of the force field; therefore, they are tractable and computable as ergodic averages from a single run of the molecular dynamics simulation both in equilibrium and in non-equilibrium steady state regimes. We validate the performance of the extended SA method to two different molecular stochastic systems, a standard Lennard-Jones fluid and an all-atom methane liquid, and compare the obtained parameter sensitivities with parameter sensitivities on three popular and well-studied observable functions, namely, the radial distribution function, the mean squared displacement, and the pressure. Results show that the RER-based sensitivities are highly correlated with the observable-based sensitivities.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Estimating an executive summary of a time series: the tendency
In this paper, we revisit the problem of decomposing a signal into a tendency and a residual. The tendency describes an executive summary of a signal that encapsulates its notable characteristics while disregarding seemingly random, less interesting aspects. Building upon the Intrinsic Time Decomposition (ITD) and information-theoretical analysis, we introduce two alternative procedures for selecting the tendency from the ITD baselines. The first is based on the maximum extrema prominence, namely the maximum difference between extrema within each baseline. Specifically this method selects the tendency as the baseline from which an ITD step would produce the largest decline of the maximum prominence. The second method uses the rotations from the ITD and selects the tendency as the last baseline for which the associated rotation is statistically stationary. We delve into a comparative analysis of the information content and interpretability of the tendencies obtained by our proposed methods and those obtained through conventional low-pass filtering schemes, particularly the Hodrik–Prescott (HP) filter. Our findings underscore a fundamental distinction in the nature and interpretability of these tendencies, highlighting their context-dependent utility with emphasis in multi-scale signals. Through a series of real-world applications, we demonstrate the computational robustness and practical utility of our proposed tendencies, emphasizing their adaptability and relevance in diverse time series contexts.
Time series analysis↗
On the relation between the subadditivity cone and the quantum entropy cone
Given a multipartite quantum system, what are the possible ways to impose mutual independence among some subsystems, and the presence of correlations among others, such that there exists a quantum state which satisfies these demands? This question and the related notion of a pattern of marginal independence (PMI) were introduced in [1], and then argued in [2] to be central in the derivation of the holographic entropy cone. Here we continue the general information theoretic analysis of the PMIs allowed by strong subadditivity (SSA) initiated in [1]. We show how the computation of these PMIs simplifies when SSA is replaced by a weaker constraint, dubbed Klein’s condition (KC), which follows from the necessary condition for the saturation of subadditivity (SA). Formulating KC in the language of partially ordered sets, we show that the set of PMIs compatible with KC forms a lattice, and we investigate several of its structural properties. One of our main results is the identification of a specific lower dimensional face of the SA cone that contains on its boundary all the extreme rays (beyond Bell pairs) that can possibly be realized by quantum states. We verify that for four or more parties, KC is strictly weaker than SSA, but nonetheless the PMIs compatible with SSA can easily be derived from the KC-compatible ones. For the special case of 1-dimensional PMIs, we conjecture that KC and SSA are in fact equivalent. To make the presentation self-contained, we review the key ingredients from lattice theory as needed.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Temporal Methods to Detect Content-Based Anomalies in Social Media
Here, we develop a method for time-dependent topic tracking and meme trending in social media. Our objective is to identify time periods whose content differs signifcantly from normal, and we utilize two techniques to do so. The first is an information-theoretic analysis of the distributions of terms emitted during different periods of time. In the second, we cluster documents from each time period and analyze the tightness of each clustering. We also discuss a method of combining the scores created by each technique, and we provide ample empirical analysis of our methodology on various Twitter datasets.
97 MATHEMATICS AND COMPUTING↗
Uncertainty Analysis of an Information Theoretic Estimation of Seismic Signals.
Abstract not provided.
Peterson, Matthew Gregor↗
Security Analysis of Selected AMI Failure Scenarios Using Agent Based Game Theoretic Simulation
Information security analysis can be performed using game theory implemented in dynamic Agent Based Game Theoretic (ABGT) simulations. Such simulations can be verified with the results from game theory analysis and further used to explore larger scale, real world scenarios involving multiple attackers, defenders, and information assets. We concentrated our analysis on the Advanced Metering Infrastructure (AMI) functional domain which the National Electric Sector Cyber security Organization Resource (NESCOR) working group has currently documented 29 failure scenarios. The strategy for the game was developed by analyzing five electric sector representative failure scenarios contained in the AMI functional domain. From these five selected scenarios, we characterize them into three specific threat categories affecting confidentiality, integrity and availability (CIA). The analysis using our ABGT simulation demonstrates how to model the AMI functional domain using a set of rationalized game theoretic rules decomposed from the failure scenarios in terms of how those scenarios might impact the AMI network with respect to CIA.
Agent Based↗
Investigation of similarity metrics for simulation based scaling analysis
Scaling analysis is a technique for characterizing degree of similarity between processes to occur in a real prototypic system and those to occur in its reduced scale (experimental) analog. In the context of nuclear reactor thermal-hydraulics and safety, scaling analysis is instrumental in assessing the applicability of data obtained from a scaled test facility for calibration of models and validation of simulation codes. Quantification of scale-related distortions is the key element in scaling analysis. In this work, we examine an approach for scaling analysis using computer simulation codes. Similarity analysis using information-theoretic approach is performed by comparing performance of experiment and application to variation of system conditions. Three different information theoretic measures namely mutual information, Kullback-Leibler divergence and overlap coefficient are selected for their potential use as metric for similarity analysis. We test the metrics by comparing them against physics-based scaling ratios, which are well known in fundamental thermal-hydraulic processes. In this exploratory analysis, a case of pressure drop of a steady-state flow through a channel is employed to test the proposed approach. It was found that in the absence of model uncertainties, mutual information serve as an effective measure of the scale effects present in the experiment. However, model uncertainty can significantly impact the quality of similarity analysis. Our analysis indicates that model uncertainties can have significant impact on the information theoretic metrics used for scaling analysis. Furthermore, if the model uncertainties exceeds beyond a critical value, the scale effect present in the experiment cannot be adequately evaluated. (authors)
22 GENERAL STUDIES OF NUCLEAR REACTORS↗
ISAP-MATLAB Package for Sensitivity Analysis of High-Dimensional Stochastic Chemical Networks
Stochastic simulation and modeling play an important role to elucidate the fundamental mechanisms in complex biochemical networks. The parametric sensitivity analysis of reaction networks becomes a powerful mathematical and computational tool, yielding information regarding the robustness and the identifiability of model parameters. However, due to overwhelming computational cost, parametric sensitivity analysis is a extremely challenging problem for stochastic models with a high-dimensional parameter space and for which existing approaches are very slow. Here we present an information-theoretic sensitivity analysis in path-space (ISAP) MATLAB package that simulates stochastic processes with various algorithms and most importantly implements a gradient-free approach to quantify the parameter sensitivities of stochastic chemical reaction network dynamics using the pathwise Fisher information matrix (PFIM; Pantazis, Katsoulakis, and Vlachos 2013). The sparse, block-diagonal structure of the PFIM makes its computational complexity scale linearly with the number of model parameters. As a result of the gradientfree and the sparse nature of the PFIM, it is highly suitable for the sensitivity analysis of stochastic reaction networks with a very large number of model parameters, which are typical in the modeling and simulation of complex biochemical phenomena. Finally, the PFIM provides a fast sensitivity screening method (Arampatzis, Katsoulakis, and Pantazis 2015) which allows it to be combined with any existing sensitivity analysis software.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Solving structure with sparse, randomly-oriented x-ray data
Single-particle imaging experiments of biomolecules at x-ray free-electron lasers (XFELs) require processing hundreds of thousands of images that contain very few x-rays. Each low-fluence image of the diffraction pattern is produced by a single, randomly oriented particle, such as a protein. We demonstrate the feasibility of recovering structural information at these extremes using low-fluence images of a randomly oriented 2D x-ray mask. Successful reconstruction is obtained with images averaging only 2.5 photons per frame, where it seems doubtful there could be information about the state of rotation, let alone the image contrast. This is accomplished with an expectation maximization algorithm that processes the low-fluence data in aggregate, and without any prior knowledge of the object or its orientation. The versatility of the method promises, more generally, to redefine what measurement scenarios can provide useful signal.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Light Water Sustainability Program: Optimizing Information Automation Using a New Method Based on System-Theoretic Process Analysis
This report describes the interim progress for research supporting the design and optimization of information automation systems for nuclear power plants. Much of the domestic nuclear fleet is currently focused on modernizing technologies and processes, including transitioning toward digitalization in the control room and elsewhere throughout the plant, along with a greater use of automation, artificial intelligence, robotics, and other emerging technologies. While there are significant opportunities to apply these technologies toward greater plant safety, efficiency, and overall cost-effectiveness, optimizing their design and avoiding potential safety and performance risks depends on ensuring that human-performance-related organizational and technical design issues are identified and addressed. This report describes modeling tools and techniques, based on sociotechnical system theory, to support these design goals and their application in the current research effort. The report is intended for senior nuclear energy stakeholders, including regulators, corporate management, and senior plant management. We have developed and employed a method to design an optimized information automation ecosystem (IAE) based on the systems-theoretic constructs underlying sociotechnical systems theory in general and the Systems-Theoretic Accident Modeling and Processes (STAMP) approach in particular. We argue that an IAE can be modeled as an interactive information control system whose behavior can be understood in terms of dynamic control and feedback relationships amongst the system’s technical and organizational components. Up to this point, we have employed a Causal Analysis based on STAMP (CAST) technique to examine a performance- and safety-related incident at an industry partner’s plant that involved the unintentional activation of an emergency diesel generator. This analysis provided insight into the behavior of the plant’s current information control structure within the context of a specific, significant event. Our ongoing analysis is focused on identifying near-term process improvements and longer-term design requirements for an optimized IAE system. The latter analyses will employ a second STAMP-derived technique, System-Theoretic Process Analysis (STPA). STPA is a useful modeling tool for generating and analyzing actual or potential information control structures. Finally, we have begun modeling plantwide organizational relationships and processes. Organizational system modeling will supplement our CAST and STPA findings and provide a basis for mapping out a plantwide information control architecture. CAST analysis findings indicate an important underlying contributor to the incident under investigation, and a significant risk to information automation system performance, was perceived schedule pressure, which exposed weaknesses in interdepartmental coordination between and within responsible plant organizations and challenged the resilience of established plant processes, until a human caused the initiating event. These findings are discussed in terms of their risk to overall system performance and their implications for information automation system resilience and brittleness. We present two preliminary information automation models. The proactive issue resolution model is a test case of an information automation concept with significant near-term potential for application and subsequent reduction in significant plant events. The IAE model is a more general representation of a broader, plantwide information automation system. From our results, we have generated a set of preliminary system-level requirements and safety constraints. These requirements will be further developed over the remainder of our project in collaboration with nuclear industry subject matter experts and specialists in the technical systems under consideration. Additionally, we will continue to pursue the system analyses initiated in the first part of our effort, with a particular emphasis on STPA as the main tool to identify weak or weakening control structures that affect the resilience of organizations and programs. Our intent is to broaden the scope of the analysis from an individual use case to a related set of use cases (e.g., maintenance tasks, compliance tasks) with similar human-system performance challenges. This will enable more generalized findings to refine the Proactive Issue Resolution and IAE models, as well as their system-level requirements and safety constraints. We will use organizational system modeling analyses to supplement STPA findings and model development. We conclude the report with a set of summary recommendations and an initial draft list of system-level requirements and safety constraints for optimized information automation systems.
99 GENERAL AND MISCELLANEOUS↗
Using Systems Theoretic Process Analysis and Causal Analysis to Map and Manage Organizational Information to Enable Digitalization and Information Automation
The overarching goal of this Light Water Reactor Sustainability Program–supported research and development project is to provide planning tools and comprehensive guidance to utilities considering or undertaking full nuclear plant modernization. The results of this research will provide the nuclear industry with a comprehensive and usable solution, including guidance, lessons learned, methods, and planning tools. This research is currently working to provide guidance on digitalization and information automation to enable the evolution of data to information, insight, and action—thereby allowing utilities to operate safely and cost-competitively with all other electrical generation sources. Light Water Reactor Sustainability Program researchers have also recently started investigating how human and technology integration principles, information automation, and digitalization enable data evolution. These researchers are currently in the process of validating the use of System-Theoretic Process Analysis to define high-level safety constraints in the United States Nuclear Regulatory Commission’s problem identification and resolution process (i.e., a plant compliance information gathering activity). The next step in this research, which is described in the following sections of this report, is to map out data evolution in a use case to identify inefficiencies in another aspect of plant compliance information gathering and communication activities—event investigations and root cause analyses.
21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
Optimizing Information Automation Using a New Method Based on System-Theoretic Process Analysis: Tool Development and Method Evaluation
This report is an update to a prior report that describes progress and findings for a program of research supporting the design and optimization of information automation systems for nuclear power plants. Much of the domestic nuclear fleet is currently focused on modernizing technologies and processes, including transitioning toward digitalization in the control room and throughout the plant, along with a greater interest in the use of automation, artificial intelligence, robotics, and other emerging technologies. While there are significant opportunities to apply these technologies toward greater plant safety, efficiency, and overall cost-effectiveness, optimizing their design and avoiding potential safety and performance risks depends on ensuring that human performance-related organizational and technical design issues are identified and addressed early in the design process. This report describes modeling tools and techniques, based on sociotechnical systems theory, to support these design goals and their application in the current research effort. The report is primarily intended for senior nuclear energy stakeholders, including regulators, corporate management, and senior plant management. We have developed and employed a method to design an optimized information automation ecosystem (IAE) based on the systems-theoretic constructs underlying sociotechnical systems theory in general and the Systems-Theoretic Accident Modeling and Processes (STAMP) approach in particular. We argue that an IAE can be modeled as an interactive information control system whose behavior can be understood in terms of dynamic control, feedback, and communication relationships amongst the system’s technical and organizational components. We have employed two STAMP-based tools in this effort. The first is Causal Analysis based on STAMP (CAST), an accident and incident analysis technique that was used to examine a performance- and safety-related incident at an industry partner’s plant involving the unintentional activation of an emergency diesel generator. This analysis provided insight into the behavior of the plant’s current information control structure within the context of a specific, significant event. The second tool is Systems Theoretic Process Analysis (STPA) which is a proactive risk analysis tool used to examine existing and potential, planned sociotechnical systems. STPA was used to identify risk factors in the current design of a generic nuclear power plant (NPP) preventive maintenance system. Our analyses focused on identifying near-term system improvements and longer-term design requirements for an optimized IAE system. CAST analysis findings indicate an important underlying contributor to the incident under investigation, and a significant risk to information automation system performance, was perceived time and schedule pressure, which exposed weaknesses in interdepartmental coordination between and within responsible plant organizations and challenged the resilience of established plant processes, until a human caused the eventual event. These findings are discussed in terms of their risk to overall system performance and their implications for information automation system resilience and brittleness. STPA findings exposed several areas of concern in the design of current preventive maintenance systems. We also present two preliminary information automation models. The proactive issue resolution (PIR) model is a test case of an information automation concept with significant near-term potential for application and subsequent reduction in significant plant events. The IAE model is a more general representation of a broader, plantwide information automation system and represents an end-state vision for our work. From our results, we have generated an initial set of preliminary system-level requirements and safety constraints for these models. We have also focused on early development of easy to learn, easy to use “transportable” tools for sociotechnical systems analysis. We intend these to be used by NPP personnel as a means of gaining reliable and relatively quick insight into (1) sociotechnical systems factors impacting incidents and accidents, (2) potential sociotechnical risk factors in existing or planned system designs, and (3) potential weaknesses in a system’s safety and/or information control structure. We conclude the report with a set of summary recommendations, a discussion of planned and potential follow-on research and development, and a draft list of system-level requirements and safety constraints for optimized information automation systems.
99 GENERAL AND MISCELLANEOUS↗
Transient superconductivity at nano- and meso-scales
High-T c superconductivity is surpassed by few, if any, other unsolved problems in contemporary physics in terms of its richness, complexity, impact on other fields, and potential technological importance in energy applications. Recent discoveries reveal that the highest transition temperatures emerge under extraordinary experimental conditions such as the strong perturbation of a single atomic layer material by the underlying substrate, application of ~200 GPa pressure or ~MV/cm static electric fields, or irradiation by intense femtosecond optical fields. Research in superconductivity under extreme experimental conditions is challenging and requires the development of novel experimental methods and new theoretical tools suitable to tackle the problem. Our team has approached the challenges of transient superconductivity under intense optical fields by rethinking the types of experimental observables that are best suited to elucidate the physics of light-induced effects. This exercise has identified the need for: i) ultra-fast spatio-temporal probes enabling access to plasmonic properties and also nano-scale inhomogeneities that are ubiquitous in unconventional superconductors; ii) meso-scale structures and hybrid meta-surfaces imperative for strong enhancement of optical fields and iii) theoretical approaches suitable to explain and predict the response of superconductors under ultra-fast photo-excitation. Co-PIs have already made major advances with developing capabilities i)-iii). Therefore, our team is poised to make significant progress in transient superconductivity by exploring novel spatio-temporal effects that currently remain unattainable. Co-investigators will search for light-induced superconductivity in the high-T c cuprates to build upon spectacular recent results still lacking independent confirmations. Novel data acquisition methods combined with nano-plasmonic imaging will allow our team to test the hypothesis of photo-induced superconducting pairing. Spatio-temporal experiments will provide insights into the interplay between superconductivity and competing orders in the cuprates. Co-PIs will also investigate strong light-matter interaction and superconductivity in FeSe monolayers. Finally, we will study spatio-temporal electrodynamics of planar Josephson junctions. This latter direction will allow our team to thoroughly characterize one of the most fundamental examples of inhomogeneity in all of unconventional superconductivity. The proposed experiments in combination with theoretical analysis will provide information that is difficult to obtain using alternative methods. Basov and Averitt will carry out pump-probe spectroscopy and nano-imaging experiments. Averitt and Hone will design and fabricate state-of-the-art meta-surfaces. Theoretical and computational studies of ultrafast transient phenomena will be carried out by Millis and Fogler. Modeling of time-resolved nano-optical effects will be done by Fogler. The bulk of the requested budget will be used to support graduate students at Columbia & UCSD that will be co-supervised by co-PIs. The proposed program is transformative, since it will enable an entire suite of experiments previously either impossible or technically implausible. It will deliver critically important insights not only into mechanisms of unconventional superconductivity but also to many other correlated quantum materials.
36 MATERIALS SCIENCE↗
Using Systems Theoretic Perspectives for Risk-Informed Cyber Hazard Analysis in Nuclear Power Plants.
Abstract not provided.
Clark, Andrew Jordan↗
Using Systems Theoretic Perspectives for Risk-Informed Cyber Hazard Analysis in Nuclear Power Plants.
Abstract not provided.
Williams, Adam David↗
Spatiotemporal structure of edge harmonic oscillation and its role in ELM-free QH-mode at KSTAR
In Quiescent H-mode (QH-mode), edge-localized modes (ELMs) are naturally replaced by a low-n edge harmonic oscillation (EHO), yet the self-regulating transport mechanism driven by the EHO remains insufficiently understood. Using high-spatiotemporal-resolution imaging diagnostics on KSTAR—electron cyclotron emission imaging and broadband electron cyclotron emission—we resolve the eigenmode structure of the EHO and elucidate its regulatory role in edge transport. The EHO is localized within the pedestal near the maximum pressure gradient, propagates in the ion-diamagnetic direction, and its radial envelope expands with increasing shear, suggesting that rotational shear is closely associated with the structural evolution of the EHO. Information-theoretic Transfer Entropy analysis identifies a distinct ‘dual-stabilization’ regulatory interaction pattern: the EHO is associated with enhanced outward energy transport to limit the pressure gradient, while the background shear flow is associated with preferential regulatory influence on the EHO saturation amplitude and energy flux. These results demonstrate that the QH-mode pedestal is sustained by a shear-associated regulation mechanism, where the coupling between rotational shear and mode structure appears closely linked to the sustained ELM-free state.
ECEI↗
International Standards as Critical Enablers to Development and Diffusion of D and D Technologies - 19372
The U.S. Department of Energy's Office of Environmental Management (DOE EM) has taken a leading role in investing in the research and development (R and D) of critical technologies to support the safe and efficient decommissioning of legacy nuclear facilities. In order to facilitate the complex-wide deployment and adoption of those technologies from the laboratory to end users, and to maximize return on investment of government-sponsored R and D projects, DOE EM proactively solicits and evaluates initiatives intended to enhance achievement of these goals. One such case study emerged and involved the successful deployment of an intumescent fixative technology in support of the SRS 235-F PuFF Facility Risk Reduction Program. A detailed analysis confirmed that a critical enabler and key contributor to this effort was a deliberate, methodical approach to leverage an international, consensus-based standards organization from the onset. There is a substantial body of literature that supports the crucial role of standards in technology programs across all phases of development - from concept, to deployment, to large-scale diffusion - in other industries. Formal standards are the result of a consensual negotiation process carried out by producers, regulators, end users and other interested stakeholders in a voluntary process within standardization organizations (WTO, 2011). Therefore, standard setting is often viewed as a self-regulatory process (Gupta and Lad, 1983), and can often yield better acceptance of technologies in certain industries, particularly if those standards are further referenced in government directives and regulations. This analysis connects several theoretical concepts: information asymmetry, risk adverse markets, and technology diffusion. It is complimented by some initial, rudimentary survey results in a burgeoning academic study conducted by the author, and reinforced by the aforementioned case study on the deployment of a fixative technology at the SRS 235-F PuFF Facility. The importance of managing a holistic technology development program that focuses on not just the technical aspects of the technology itself, but the critical enablers as well, is emphasized. This effort has direct application to potentially enhancing DOE EM technology development programs across the complex. (authors)
12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗