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At least 19 records

Temporal changes in endmember abundances, liquid water and water vapor over vegetation at Jasper Ridge

Imaging spectrometry offers a new way of deriving ecological information about vegetation communities from remote sensing. Applications include derivation of canopy chemistry, measurement of column atmospheric water vapor and liquid water, improved detectability of materials, more accurate estimation of green vegetation cover and discrimination of spectrally distinct green leaf, non-photosynthetic vegetation (NPV: litter, wood, bark, etc.) and shade spectra associated with different vegetation communities. Much of our emphasis has been on interpreting Airborne Visible/Infrared Imaging Spectrometry (AVIRIS) data spectral mixtures. Two approaches have been used, simple models, where the data are treated as a mixture of 3 to 4 laboratory/field measured spectra, known as reference endmembers (EM's), applied uniformly to the whole image, to more complex models where both the number of EM's and the types of EM's vary on a per-pixel basis. Where simple models are applied, materials, such as NPV, which are spectrally similar to soils, can be discriminated on the basis of residual spectra. One key aspect is that the data are calibrated to reflectance and modeled as mixtures of reference EM's, permitting temporal comparison of EM fractions, independent of scene location or data type. In previous studies the calibration was performed using a modified-empirical line calibration, assuming a uniform atmosphere across the scene. In this study, a Modtran-based calibration approach was used to map liquid water and atmospheric water vapor and retrieve surface reflectance from three AVIRIS scenes acquired in 1992 over the Jasper Ridge Biological Preserve. The data were acquired on June 2nd, September 4th and October 6th. Reflectance images were analyzed as spectral mixtures of reference EM's using a simple 4 EM model. Atmospheric water vapor derived from Modtran was compared to elevation, and community type. Liquid water was compare to the abundance of NPV, Shade and Green Vegetation (VG) for select sites to determine whether a relationship existed, and under what conditions the relationship broke down. Temporal trends in endmember fractions, liquid water and atmospheric water vapor were investigated also. The combination of spectral mixture analysis and the Modtran based atmospheric/liquid water models was used to develop a unique vegetation community description.

Roberts, Dar A.↗

Mapping and monitoring changes in vegetation communities of Jasper Ridge, CA, using spectral fractions derived from AVIRIS images

An important application of remote sensing is to map and monitor changes over large areas of the land surface. This is particularly significant with the current interest in monitoring vegetation communities. Most of traditional methods for mapping different types of plant communities are based upon statistical classification techniques (i.e., parallel piped, nearest-neighbor, etc.) applied to uncalibrated multispectral data. Classes from these techniques are typically difficult to interpret (particularly to a field ecologist/botanist). Also, classes derived for one image can be very different from those derived from another image of the same area, making interpretation of observed temporal changes nearly impossible. More recently, neural networks have been applied to classification. Neural network classification, based upon spectral matching, is weak in dealing with spectral mixtures (a condition prevalent in images of natural surfaces). Another approach to mapping vegetation communities is based on spectral mixture analysis, which can provide a consistent framework for image interpretation. Roberts et al. (1990) mapped vegetation using the band residuals from a simple mixing model (the same spectral endmembers applied to all image pixels). Sabol et al. (1992b) and Roberts et al. (1992) used different methods to apply the most appropriate spectral endmembers to each image pixel, thereby allowing mapping of vegetation based upon the the different endmember spectra. In this paper, we describe a new approach to classification of vegetation communities based upon the spectra fractions derived from spectral mixture analysis. This approach was applied to three 1992 AVIRIS images of Jasper Ridge, California to observe seasonal changes in surface composition.

Sabol, Donald E., Jr.↗

Temporal Changes in Endmember Abundances, Liquid Water and Water Vapor Over Vegetation at Jasper Ridge

In this study, a Modtran-based calibration approach was used to map liquid water and atmospheric water vapor and retrieve surface reflectance from three AVIRIS scenes acquired in 1992 over the Jasper Ridge Biological Preserve. Temporal trends in endmember fractions, liquid water and atmospheric water vapor were investigated also. The combination of spectral mixture analysis and the Modtran based atmospheric/liquid water models was used to develop a unique vegetation community description.

liquid↗

Vegetation species composition and canopy architecture information expressed in leaf water absorption measured in the 1000 nm and 2200 spectral region by an imaging spectrometer

Plant species composition and plant architectural attributes are critical parameters required for the measuring, monitoring, and modeling of terrestrial ecosystems. Remote sensing is commonly cited as an important tool for deriving vegetation properties at an appropriate scale for ecosystem studies, ranging from local to regional and even synoptic scales. Classical approaches rely on vegetation indices such as the normalized difference vegetation index (NDVI) to estimate biophysical parameters such as leaf area index or intercepted photosynthetically active radiation (IPAR). Another approach is to apply a variety of classification schemes to map vegetation and thus extrapolate fine-scale information about specific sites to larger areas of similar composition. Imaging spectrometry provides additional information that is not obtainable through broad-band sensors and that may provide improved inputs both to direct biophysical estimates as well as classification schemes. Some of this capability has been demonstrated through improved discrimination of vegetation, estimates of canopy biochemistry, and liquid water estimates from vegetation. We investigate further the potential of leaf water absorption estimated from Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data as a means for discriminating vegetation types and deriving canopy architectural information. We expand our analysis to incorporate liquid water estimates from two spectral regions, the 1000-nm region and the 2200-nm region. The study was conducted in the vicinity of Jasper Ridge, California, which is located on the San Francisco peninsula to the west of the Stanford University campus. AVIRIS data were acquired over Jasper Ridge, CA, on June 2, 1992, at 19:31 UTC. Spectra from three sites in this image were analyzed. These data are from an area of healthy grass, oak woodland, and redwood forest, respectively. For these analyses, the AVIRIS-measured upwelling radiance spectra for the entire Jasper Ridge scene were transformed to apparent surface reflectance using a radiative transfer code-based inversion algorithm.

Green, Robert O.↗

Comparison of three atmospheric correction models for a vegetated airborne visible/infrared imaging spectrometer (AVIRIS) scene

Current atmospheric correction models applied to imaging spectroscopy data include such methods as residual or scene average, flat field correction, regression method or empirical line algorithm, the continuum interpolated band ratio (CIBR) derivation and the LOWTRAN 7 method. Due to the limitations of using residual and flat field corrections on vegetated scenes, three methods will be compared: regression, CIBR derivation and LOWTRAN 7. Field-measured bright and dark targets taken at the time of the 13 April, 1989 AVIRIS overflight of Jasper Ridge, California were used to formulate the regression method atmospheric correction. Using this corrected scene as 'ground truth', the CIBR derivation and the LOWTRAN 7 method with both input models are compared on the vegetated Jasper Ridge scene. Although representing a qualitative approach, this is a first approximation and shows the need for more quantitative analysis.

Van Den Bosch, J. M.↗

Primary studies of trace quantities of green vegetation in Mono Lake area using 1990 AVIRIS data

Our primary results in Jasper Ridge Biological Preserve indicate that high spectral resolution Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data may provide a substantial advantage in vegetation, based on the chlorophyll red edge feature from 700-780 nm. The chlorophyll red edge was detected for green vegetation cover as low as 4.8 percent. The objective of our studies in Mono Lake area is to continue the experiments performed in Jasper Ridge and to examine the persistence of red edge feature of trace quantities of green vegetation for different plant communities with non-uniform soil backgrounds.

Chen, Zhi-Kang↗

A Blind Convolutional Deep Autoencoder for Spectral Unmixing of Hyperspectral Images Over Waterbodies

Harmful algal blooms have dangerous repercussions for biodiversity, the ecosystem, and public health. Automatic identification based on remote sensing hyperspectral image analysis provides a valuable mechanism for extracting the spectral signatures of harmful algal blooms and their respective percentage in a region of interest. This paper proposes a new model called a non-symmetrical autoencoder for spectral unmixing to perform endmember extraction and fractional abundance estimation. The model is assessed in benchmark datasets, such as Jasper Ridge and Samson. Additionally, a case study of the HSI2 image acquired by NASA over Lake Erie in 2017 is conducted for extracting optical water types. The results using the proposed model for the benchmark datasets improve unmixing performance, as indicated by the spectral angle distance compared to five baseline algorithms. Improved results were obtained for various metrics. In the Samson dataset, the proposed model outperformed other methods for water (0.060) and soil (0.025) endmember extraction. Moreover, the proposed method exhibited superior performance in terms of mean spectral angle distance compared to the other five baseline algorithms. The non-symmetrical autoencoder for the spectral unmixing approach achieved better results for abundance map estimation, with a root mean square error of 0.091 for water and 0.187 for soil, compared to the ground truth. For the Jasper Ridge dataset, the non-symmetrical autoencoder for the spectral unmixing model excelled in the tree (0.039) and road (0.068) endmember extraction and also demonstrated improved results for water abundance maps (0.1121). The proposed model can identify the presence of chlorophyll-a in waterbodies. Chlorophyll-a is an essential indicator of the presence of the different concentrations of macrophytes and cyanobacteria. The non-symmetrical autoencoder for spectral unmixing achieves a value of 0.307 for the spectral angle distance metric compared to a reference ground truth spectral signature of chlorophyll-a. The source code for the proposed model, as implemented in this manuscript, can be found at https://github.com/EstefaniaAlfaro/autoencoder_owt_spectral.git.

hyperspectral imaging↗

Geobotanical techniques for discriminating serpentine rock types in Western United States

The effectiveness of airborne multispectral imagery for identifying vegetation indicative of serpentine soils, which usually contain deposits of Ni, Cr, and Co, was examined with ground truth data. Analyses were carried out in SW Oregon, the Jasper Ridge of the Santa Cruz Mountains, and the Sierra Nevada foothills. Airborne studies were performed with 10-channel scanner, a IR scanner, and with false color composites, while ground studies classified the vegetation and mineral contents of the soil. The airborne studies were successfully used to discern serpentine soils from nonultramafic rock types, although difficulties were encountered in separating serpentine from nonserpentinized peridotite. A lack of deciduous trees on serpentized land was noted.

Mouat, D.↗

Comparison of two atmospheric correction models for a vegetated Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) scene

Current atmospheric correction models applied to imaging spectroscopy data include such methods as residual (scene average) and flat field correction, regression method, and the LOWTRAN 7 method. Due to the limitations of using residual and flat field corrections on vegetated scenes, regression and LOWTRAN 7 are compared. Field measured targets taken at the time of the 13 April, 1989 AVIRIS overflight of Jasper Ridge, California (U.S.) were used to formulate the regression atmospheric correction. Assuming the regressed image represents ground truth, results show that the LOWTRAN 7 method with radiosonde data does not compensate as well for atmospheric water vapor as the regression method, but it may be easier to obtain a posteriori information to perform the LOWTRAN 7 atmospheric correction.

Vandenbosch, Jeannette Marie↗

Functional patterns in an annual grassland during an AVIRIS overflight

This study relates Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) imagery to ground measurements of vegetation distribution, physiology, and productivity at Stanford University's Jasper Ridge Biological Preserve. Primary efforts focused on a 9-ha region of annual grassland where we completed a detailed ground-based study in conjunction with a 15 May 1991 AVIRIS overflight. Spectral mixture analysis and the normalized difference vegetation index (NDVI) calculated from AVIRIS data were used to evaluate spatial patterns of vegetation type, productivity, and potential physiological activity. Concurrent ground sampling revealed a high degree of correlation between NDVI and estimates of canopy chemistry, structure, productivity, and CO2 flux, supporting the use of imaging spectrometry to estimate spatial and temporal trends in vegetation physiology and productivity in this relatively simple grassland ecosystem. Geostatistical analyses of both ground and AVIRIS data supported the conclusion that the AVIRIS pixel size was suitable for describing the influence of major landscape features in this grassland and that spatial detail would be lost at slightly larger pixel sizes typical of other imaging spectrometers.

Gamon, John A.↗

Green vegetation, nonphotosynthetic vegetation, and soils in AVIRIS data

The problem of distinguishing between green vegetation, nonphotosynthetic vegetation (NPV, such as dry grass, leaf litter, and woody material), and soils in imaging-spectrometer data is addressed by analyzing an image taken by the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) over the Jasper Ridge Biological Preserve (California) on September 20, 1989, using spectral mixture analysis. Over 98 percent of the spectral variation could be explained by linear mixtures of three endmembers, green vegetation, shade, and soil. NPV, which could not be distinguished from soil when included as an endmember, was discriminated by residual spectra that contained cellulose and lignin absorptions. Distinct communities of green vegetation were distinguished by (1) nonlinear mixing effect caused by transmission and scattering by green leaves, (2) variations in a derived canopy-shade spectrum, and (3) the fraction of NPV.

Roberts, D. A.↗

Using AVIRIS images to measure temporal trends in abundance of photosynthetic and nonphotosynthetic canopy components

The Jasper Ridge Biological Preserve, Stanford, California is a good example of hardwood rangeland ecosystems in California. Structurally, it is composed of a mosaic of serpentine grasslands, oak savannah, coastal chaparral, and mixed evergreen woodland, representing a broad cross-section of physiognomic classes. The Mediterranean climate produces an extended seasonal drought lasting throughout most of the growing season and has significant impact on the expression of divergent phenological patterns related to contrasting ecological strategies of these taxa. The region is well understood biologically due to the rich history of ecological research at the site. Thus, community characteristics, physiological characteristics, phenology, and temporal dynamics are reasonably well understood for many of the dominant species. Because of its proximity to NASA Ames Research Center, it has been subject to a large number of aircraft data acquisitions over many years. A more complete examination of this database would provide an opportunity to test current remote sensing hypotheses for measurement and detection of ecological attributes, particularly those involving canopy chemistry and physiology. Better definition of ecological rules might permit development of remotely sensed surrogate variables for biological properties that cannot be directly measured or measured with sufficient accuracy.

Ustin, Susan L.↗

Temporal variation in spectral detection thresholds of substrate and vegetation in AVIRIS images

The ability to map changes over large surface areas over time is one of the advantages in using remote sensing as a monitoring tool. Temporal changes in the surface may be gradual, making them difficult to detect in the short-term, and because they commonly occur at the subpixel scale, they may be difficult to detect in the long-term as well. Also, subtle changes may be real or merely an artifact of image noise. It is, therefore, necessary to understand the factors that limit the detection of surface materials in evaluating temporal data. The spectral detectability of vegetation and soil in the 1990 July and October Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data of Jasper Ridge, CA was evaluated and compared.

Sabol, Donald E., Jr.↗

Evaluation of the photochemical reflectance index in AVIRIS imagery

In this paper, we evaluate the potential for extracting the 'photochemical reflectance index' (PRI; previously called the 'physiological reflectance index') from AVIRIS data. This index, which is derived from narrow-band reflectance at 531 and 570 nm, has proven to be a useful indicator of photosynthetic function at the leaf and canopy scales. At the leaf level, PRI varies with photosynthetic capacity, radiation-use efficiency, and vegetation type (unpublished data). This finding is consistent with the hypothesis that vegetation types exhibiting chronically reduced photosynthesis during periods of stress (e.g. drought-tolerant evergreens) invest proportionally more in photoprotective processes than vegetation with high photosynthetic capacity (e.g. crops or deciduous perennials). Vertical transects in tropical and boreal forest canopies have indicated declines in PRI associated with downregulation of photosynthesis at the canopy tops under sunny, dry midday conditions (unpublished data). This reduced PRI in upper canopy levels provides a further basis for examining this signal with the 'view from above' afforded by aircraft overflights. Although many factors could confound interpretation of a subtle physiological signal at the landscape scale, we conducted a preliminary examination of PRI extracted from existing, AVIRIS imagery of Stanford University's Jasper Ridge Biological Preserve obtained on the June 2nd, 1992, overflight. The goal was to use the hyperspectral capabilities of AVIRIS to evaluate the potential of this index for obtaining useful physiological data at the landscape scale. The expectation based on leaf- and canopy-level studies was that regions containing vegetation of reduced photosynthetic capacity (e.g. chaparral or evergreen woodland) would exhibit lower PRI values than regions of high capacity (e.g. deciduous woodland).

Gamon, John A.↗

Black Hills Wildfires: Mapping Post-fire Conifer Regeneration using Snow-on Imagery

The 2000 Jasper Fire in the Black Hills of South Dakota was the largest wildfire to date in the region, burning over 83,000 acres of ponderosa pine forest. In collaboration with partners from the United States Forest Service (USFS) Black Hills Experimental Forest, USFS Rocky Mountain Research Station, and United States Geological Survey Geosciences and Environmental Change Science Center, we characterized post-fire forest regeneration within high-severity burn patches. We accomplished this by implementing novel conifer detection techniques using a snow index mask to create a winter, snow-on image composite from Landsat 8 Operational Land Imager (OLI) and Sentinel-2 Multispectral Instrument (MSI) data. We utilized 2015 USFS stem maps of field-observed regeneration plots and ocularly sampled additional reforestation sites planted in 2001–2013. In Google Earth Engine (GEE), the field data and imagery were used to train a Random Forest (RF) model. The RF model classified 2021 conifer regeneration density as low, medium, or high across the high-severity burn area with an overall accuracy of 81.3%. Approximately 45.9% of the high-severity burn had low or no regeneration (0-40 trees per acre) 20 years post-fire. Given our partners' desire to find easily accessible low conifer regeneration zones, we identified 4,079 acres of priority planting sites that were within 1,500 feet of roads, had not been planted previously, and were larger than 50 acres. This method supports the use of snow-on imagery as a successful technique to identify conifer regeneration.

Casey Menick​↗

Black Hills Wildfires: Mapping Post-Fire Conifer Regeneration using Snow-On Imagery

The 2000 Jasper Fire in the Black Hills of South Dakota was the largest wildfire to date in the region, burning over 83,000 acres of ponderosa pine forest. In collaboration with partners from the United States Forest Service (USFS) Black Hills Experimental Forest, USFS Rocky Mountain Research Station, and United States Geological Survey Geosciences and Environmental Change Science Center, we characterized post-fire forest regeneration within high-severity burn patches. We accomplished this by implementing novel conifer detection techniques using a snow index mask to create a winter, snow-on image composite from Landsat 8 Operational Land Imager (OLI) and Sentinel-2 Multispectral Instrument (MSI) data. We utilized 2015 USFS stem maps of field-observed regeneration plots and ocularly sampled additional reforestation sites planted in 2001–2013. In Google Earth Engine (GEE), the field data and imagery were used to train a Random Forest (RF) model. The RF model classified 2021 conifer regeneration density as low, medium, or high across the high-severity burn area with an overall accuracy of 81.3%. Approximately 45.9% of the high-severity burn had low or no regeneration (0-40 trees per acre) 20 years post-fire. Given our partners' desire to find easily accessible low conifer regeneration zones, we identified 4,079 acres of priority planting sites that were within 1,500 feet of roads, had not been planted previously, and were larger than 50 acres. This method supports the use of snow-on imagery as a successful technique to identify conifer regeneration.

Casey Menick↗

Mapping Post-fire Conifer Regeneration using Snow-on Imagery

The 2000 Jasper Fire in the Black Hills of South Dakota was the largest wildfire to date in the region, burning over 83,000 acres of ponderosa pine forest. In collaboration with partners from the United States Forest Service (USFS) Black Hills Experimental Forest, USFS Rocky Mountain Research Station, and United States Geological Survey Geosciences and Environmental Change Science Center, we characterized post-fire forest regeneration within high severity burn patches. We accomplished this by implementing novel conifer detection techniques using a snow index mask to create a winter, snow-on image composite from Landsat 8 Operational Land Imager (OLI) and Sentinel-2 Multispectral Instrument (MSI) data. We utilized 2015 USFS stem maps of field-observed regeneration plots and ocularly sampled reforestation sites planted from 2001–2013. The field data and imagery were used to train a Random Forest (RF) model in Google Earth Engine. The RF model classified conifer regeneration density as low, medium, or high across the high-severity burn area with an overall accuracy of 81.3% for 2021. Approximately 45.9% of the high-severity burn area had low or no regeneration (0-40 trees per acre) 20 years post-fire. Given our partners' desire to find easily accessible low conifer regeneration zones, we identified 4,079 acres of priority planting sites that were within 1,500 feet of roads, had not been planted previously, and were larger than 50 acres. This method supports the use of snow-on imagery as a successful technique to identify conifer regeneration in a post-wildfire landscape.

Yeshey Seldon↗