Understanding the potential risk to marine mammals from collision with tidal turbines
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Copping, Andrea↗
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Ecotoxicoparasitology of mercury and trace elements in semi-aquatic mammals and their endoparasite communities
Not provided.
Environmental Sciences & Ecology↗
Reproduction drives changes in space use and habitat selection in a highly adaptable invasive mammal
Abstract For ungulates, it is not well understood how the interaction between habitat and reproduction affects movement behavior, space use, and habitat selection. We used known parturition (farrowing) data to validate First Passage Time (FPT) movement analysis to identify wild pig (Sus scrofa) parturition events from data collected with GPS collars. We examined home range and habitat selection during three physiologically distinct time periods in the reproductive cycle: late-gestation; farrowing; and neonate-care period. Sows exhibited a behavioral change 1-2 days prior to farrowing, suggesting FPT analysis can reliably identify parturition events for wide-ranging species that have a focused birthing area. Home range was smallest during the farrowing period, likely reflective of nest building, parturition, and protection of neonates. Home range size during the neonate-care period was intermediate between the late-gestation and farrowing periods, indicative of offspring care that may restrict maternal movement. Across all periods, sows avoided developed areas that have sparse canopy and ground cover and are associated with human activities. During late-gestation, sows avoided pine forests that have an open understory and less vegetative cover. During late-gestation and neonate-care, sows selected bottomland hardwood forests, habitat associated with ample food, cover, and water. During farrowing and neonate-care periods, sows selected upland hardwood forests, habitat with high quality food and cover for neonates. The physiological requirements of reproduction drive female habitat selection and spatial scale of movement patterns associated with parturition. Our study contributes to delineation of the appropriate scale at which to analyze movement data to provide insight about where individuals chose to place their home range, how much space to use, and how they use resources on the landscape to maximize reproductive success and fitness.
Zoology↗
Effect of altered gravity on temperature regulation in mammals: Investigation of gravity effect on temperature regulation in mammals
Male, Long-Evans hooded rats were instrumented for monitoring core and hypothalamic temperatures as well as shivering and nonshivering thermogenesis in response to decreased ambient temperature in order to characterize the nature of the neural controller of temperature in rats at 1G and evaluate chronic implantation techniques for the monitoring of appropriate parameters at hypergravic fields. The thermoregulatory responses of cold-exposed rats at 2G were compared to those at 1G. A computer model was developed to simulate the thermoregulatory system in the rat. Observations at 1 and 2G were extended to acceleration fields of 1.5, 3.0 and 4.0G and the computer model was modified for application to altered gravity conditions. Changes in the acceleration field resulted in inadequate heat generation rather than increased heat loss. Acceleration appears to impair the ability of the neurocontroller to appropriately integrate input signals for body temperature maintenance.
Horwitz, B. A.↗
Climate, food and humans predict communities of mammals in the United States
Abstract Aim The assembly of species into communities and ecoregions is the result of interacting factors that affect plant and animal distribution and abundance at biogeographic scales. Here, we empirically derive ecoregions for mammals to test whether human disturbance has become more important than climate and habitat resources in structuring communities. Location Conterminous United States. Time Period 2010–2021. Major Taxa Studied Twenty‐five species of mammals. Methods We analysed data from 25 mammal species recorded by camera traps at 6645 locations across the conterminous United States in a joint modelling framework to estimate relative abundance of each species. We then used a clustering analysis to describe 8 broad and 16 narrow mammal communities. Results Climate was the most important predictor of mammal abundance overall, while human population density and agriculture were less important, with mixed effects across species. Seed production by forests also predicted mammal abundance, especially hard‐mast tree species. The mammal community maps are similar to those of plants, with an east–west split driven by different dominant species of deer and squirrels. Communities vary along gradients of temperature in the east and precipitation in the west. Most fine‐scale mammal community boundaries aligned with established plant ecoregions and were distinguished by the presence of regional specialists or shifts in relative abundance of widespread species. Maps of potential ecosystem services provided by these communities suggest high herbivory in the Rocky Mountains and eastern forests, high invertebrate predation in the subtropical south and greater predation pressure on large vertebrates in the west. Main Conclusions Our results highlight the importance of climate to modern mammals and suggest that climate change will have strong impacts on these communities. Our new empirical approach to recognizing ecoregions has potential to be applied to expanded communities of mammals or other taxa.
Kays, Roland↗
Marine Mammal Behavioral Response to Tidal Turbine Sound
The sound emitted by tidal turbines overlaps with the generalized hearing ranges for marine mammals and may, consequently, affect marine mammal behavior. Because of the strong environmental protections for marine mammals, these effects are of interest to resource agencies and project developers. The primary goal of this project is to improve the understanding of how sound emitted by tidal turbines may affect marine mammal behavior, with the intent that such understanding may allow this environmental risk to be “retired” for initial demonstrations and arrays. A secondary project goal is to evaluate the efficacy of marine mammal observations from a shore-based vantage point as a method to detect change as a consequence of marine energy stressors. Three, two-week trials were conducted across spring, summer and autumn of 2017 during which vantage-point observations of marine mammals were made from land. We refer to these two-week periods as ‘trials’ as they represent different periods of field data collection. These observations consisted of scan samples every 10 minutes with a set of binoculars and a DSLR camera. When pinnipeds were sighted, still images were taken. When harbor porpoise were sighted, focal follows using video were initiated. These data were later analyzed to estimate the location of animals sighted using photogrammetric techniques. For approximately half of each trial period, a boat was moored in the study area from which an underwater projector was used to play back tidal turbine sounds at a broadband source level of 158 dB re µPa @ 1 m. The other half of each trial period had no playbacks and was used as a control period. During the control and playback periods, ancillary data were collected in the study area near the sea floor (ambient noise, tidal velocity, and porpoise clicks) while weather and vessel tracks were recorded near the vantage-point station. Harbor seals did not show a significant response to the simulated turbine noise, nor did harbor porpoise change their closest point of approach or change the direction/deviation of the paths during periods when the playback was occurring. While porpoise sightings and porpoise acoustic detections were significantly reduced during playback periods in the first two trials, the number of detections during the playback periods increased during the third trial. Similarly, the calculated distance from porpoises to the playback location suggests that harbor porpoises avoided an area around the playback location of approximately 300 m during Trial 1, which decreased to approximately 100 m in Trial 2, and disappeared in Trial 3. This could be an indication of habituation or increased tolerance, either to the playback sound or the vessel presence. Our finding of no significant effect of turbine noise on harbor seals contrast with the findings in a previous study by Hastie et al. (2017) conducted in United Kingdom waters. However, due to substantive differences in source levels and propagation loss, seals in our study would need to have been within 10 m of the playback location to experience similar received levels to those in the Hastie et al. study. Consequently, the two studies may actually be in agreement. Our findings of significant effect of turbine noise on harbor porpoise are in line with previous studies suggesting the harbor porpoise are sensitive to noise. However, we note that, due to cost and logistical constraints, the playback vessel was only mooring during the playback periods. Consequently, we cannot definitively ascribe the changes in porpoise behavior to the simulated turbine noise, playback vessel presence, or a combination of both factors. This methodological limitation and other lessons learned are discussed to benefit future studies that explore the effects of acoustic stressors on marine mammals.
16 TIDAL AND WAVE POWER↗
Osmoregulation in marine mammals
Osmoregulation in marine mammals has been investigated for over a century; however, a review of recent advances in our understanding of water and electrolyte balance and of renal function in marine mammals is warranted. The following topics are discussed: (i) kidney structure and urine concentrating ability, (ii) sources of water, (iii) the effects of feeding, fasting and diving, (iv) the renal responses to infusions of varying salinity and (v) hormonal regulation. The kidneys of pinnipeds and cetaceans are reniculate in structure, unlike those of terrestrial mammals (except bears), but this difference does not confer any greater concentrating ability. Pinnipeds, cetaceans, manatees and sea otters can concentrate their urine above the concentration of sea water, but only pinnipeds and otters have been shown to produce urine concentrations of Na+ and Cl- that are similar to those in sea water. This could afford them the capacity to drink sea water and not lose fresh water. However, with few exceptions, drinking is not a common behavior in pinnipeds and cetaceans. Water balance is maintained in these animals via metabolic and dietary water, while incidental ingestion and dietary salt may help maintain electrolyte homeostasis. Unlike most other aquatic mammals, sea otters commonly drink sea water and manatees frequently drink fresh water. Among the various taxonomic groups of marine mammals, the sensitivity of the renin-angiotensin-aldosterone system appears to be influenced by the availability of Na+. The antidiuretic role of vasopressin remains inconclusive in marine mammals, while the natriuretic function of atrial natriuretic peptide has yet to be examined. Ideas on the direction of future studies are presented.
Non-NASA Center↗
Effects of Precommercial Thinning and Midstory Control on Avian and Small Mammal Communities during Longleaf Pine Savanna Restoration.
Abstract - Restoring longleaf pine (Pinus palustris Mill.) savanna is a goal of many southern land managers, and longleaf plantations may provide a mechanism for savanna restoration. However, the effects of silvicultural treatments used in the management of longleaf pine plantations on wildlife communities are relatively unknown. Beginning in 1994, we examined effects of longleaf pine restoration with plantation silviculture on avian and small mammal communities using four treatments in four 8- to 11- year-old plantations within the Savannah River Site in South Carolina. Treatments included prescribed burning every 3 to 5 years, plus: (1) no additional treatment (burn-only control); (2) precommercial thinning; (3) non-pine woody control with herbicides; and (4) combined thinning and woody control. We surveyed birds (1996-2003) using 50-m point counts and small mammals with removal trapping. Thinning and woody control alone had short-lived effects on avian communities, and the combination treatment increased avian parameters over the burn-only control in all years. Small mammal abundance showed similar trends as avian abundance for all three treatments when compared with the burn-only control, but only for 2 years post-treatment. Both avian and small mammal communities were temporarily enhanced by controlling woody vegetation with chemicals in addition to prescribed fire and thinning. Therefore, precommercial thinning in longleaf plantations, particularly when combined with woody control and prescribed fire, may benefit early-successional avian and small mammal communities by developing stand conditions more typical of natural longleaf stands maintained by periodic fire.
60 APPLIED LIFE SCIENCES↗
An improved dataset for predicting mammal infecting viruses from genetic sequence information
There have been several attempts to develop machine learning (ML) models to identify human infecting viruses from their genomic sequences, with varying degrees of success. Direct comparison between models is problematic, because these models are typically trained and evaluated on different datasets with alternative data splitting schemes, features, and model performance metrics. In this paper we present a standardized dataset of mammal infecting and non-infecting viral pathogens, refined from the previous work of Mollentze et al. to include the latest literature evidence, roughly doubling the number of curated host-virus records available to the community, and new host target labels, primate and mammal. The new host labels were included for several reasons, including previous reports that classification performance is better at broader taxonomic ranks and the idea that there may be more data for primate infection that might serve as a suitable proxy for zoonotic potential and avoidance of false positives for human infection due to absence of evidence. On this dataset, we report the performance of eight machine learning models for predicting mammal-infecting viruses from their genomic sequences. We find that randomly assigning cases in our improved dataset to training/testing sets, when compared to the original assignments into training/testing in Mollentze et al., increases the overall average ROC AUC of prediction of human infection from 0.663 ± 0.070 to 0.784 ± 0.013, consistent with the reduction in phylogenetic distance between train and test sets (relative entropy change from 3.00 to 0.08). The broadest host category of mammal infection can be predicted most reliably at 0.850 ± 0.020. We share our improved dataset and code to enable standardized comparisons of machine learning methods to predict human host infections. Overall, we have presented preliminary evidence that classification of virus host infection is more tractable at higher taxonomic ranks, that unsurprisingly reducing the phylogenetic distance between training and test sets can improve predictive performance, that peptide kmer features appear to be harmful to out of sample model performance, and we are left with the question of whether models for virus host prediction can reasonably be expected to perform well in out of sample scenarios given the likelihood that viruses do not share a common ancestor. Consistent with this concern, when the data is resampled such that there is no overlap between viral families in training and test sets (relative entropy > 24), models perform no better than random chance at prediction of human infection regardless of whether kmers are included (ROC AUC 0.50 ± 0.08) or not (ROC AUC 0.50 ± 0.04).
59 BASIC BIOLOGICAL SCIENCES↗
Small Mammal Prey Base for American Marten (Martes americana) within the Manistee National Forest of Michigan
American martens (Martes americana) are typically found in late-successional forests with closed canopy cover and high structural diversity. Reintroduced populations of martens in the Northern Lower Peninsula of Michigan inhabit areas that are devoid of many of these features, which may impact their prey base. The goal of our study was to evaluate the small mammal prey base available to martens in the Northern Lower Peninsula. To assess prey availability, diversity, and composition, as well as effects of trap type and habitat features on trapping success, we sampled 24 study plots within the Manistee National Forest for small mammals in 2013 (n=24) and 2014 (n=20). Study plots were situated in four habitat types: conifer, deciduous, mixed conifer-deciduous, and mixed oak. Total capture rates were significantly and positively associated with relative deciduous tree cover. Furthermore, this result highlights how managing tracts of land for small mammal prey base may overlap with goals set forth by researchers for marten habitat needs (e.g., resting site preferences). We found large Sherman traps had significantly higher total capture rates than other trap types (medium Sherman and pitfall traps), and we recommend that researchers use a variety of trap types to maximize detectability of small mammal species diversity and richness.
59 BASIC BIOLOGICAL SCIENCES↗
Biota dose assessment of small mammals sampled near uranium mines in northern Arizona
In 2015, the U. S. Geological Survey (USGS) collected approximately 50 small mammal carcasses from Northern Arizona uranium mines and other background locations. Based on the highest gross alpha results, 11 small mammal samples were selected for radioisotopic analyses. None of the background samples had significant gross alpha results. The 11 small mammals were identified relative to the three ‘indicator’ mines located south of Fredonia, AZ on the Kanab Plateau (Kanab North Mine, Pinenut Mine, and Arizona 1 Mine) (Figure 1-1) and are operated by Energy Fuels Resources Inc. (EFRI). EFRI annually reports soil analysis for uranium and radium-226 using Arizona Department of Environmental Quality (ADEQ)-approved Standard Operating Procedures for Soil Sampling (EFRI 2016a, 2016b, 2017). In combination with the USGS small mammal radioiosotopic tissue analyses, a biota dose assessment was completed by Savannah River National Laboratory (SRNL) using the RESidual RADioactivity-BIOTA (RESRAD-BIOTA, V. 1.8) dose assessment tool provided by the Argonne National Laboratory (ANL 2017).
63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗
Effects of human presence on African mammal waterhole attendance and temporal activity patterns
Abstract Human impacts on the environment and wildlife populations are increasing globally, threatening thousands of species with extinction. While wildlife‐based tourism is beneficial for educating tourists, generating income for conservation efforts, and providing local employment, more information is needed to understand how this industry may impact wildlife. In this study, we used motion‐activated cameras at 12 waterholes on a private game reserve in northern Namibia to determine if the presence of humans and permanent infrastructure affected mammal visits by examining their (1) number of visits, (2) time spent, and (3) diel activity patterns. Our results revealed no differences in the number of visits based on human presence for any of the 17 mammal species studied. However, giraffes ( Giraffe camelopardalis ) spent more time at waterholes before observer presence compared to during. Additionally, several species changed diel activity patterns when human observers were present. Notably, several carnivore and ungulate species increased overlap in their activity patterns during periods while humans were present relative to when humans were absent. These modifications of mammal temporal activity patterns due to human presence could eventually lead to changes in community structure and trophic dynamics because of altered predator–prey interactions. As humans continue to expand into wildlife habitats, and wildlife‐based tourism increases globally, it is imperative that we fully understand the effects of anthropogenic pressures on mammal behavior. Monitoring of wildlife behavioral changes in response to human activity is crucial to further develop wildlife tourism opportunities in a way that optimizes the impact of conservation goals.
Patterson, J. R. [Savannah River Ecology Lab, Warn↗
200 kHz Commercial Sonar Systems Generate Lower Frequency Side Lobes Audible to Some Marine Mammals
The spectral properties of pulses transmitted by three commercially available 200 kHz echo sounders were measured to assess the possibility that sound energy in below the center (carrier) frequency might be heard by marine mammals. The study found that all three sounders generated sound at frequencies below the center frequency and within the hearing range of some marine mammals and that this sound was likely detectable by the animals over limited ranges. However, at standard operating source levels for the sounders, the sound below the center frequency was well below potentially harmful levels. It was concluded that the sounds generated by the sounders could affect the behavior of marine mammals within fairly close proximity to the sources and that that the blanket exclusion of echo sounders from environmental impact analysis based solely on the center frequency output in relation to the range of marine mammal hearing should be reconsidered.
killer whales↗
Small Mammal Prey Study for the Mexican Spotted Owl at Two Locations at Los Alamos National Laboratory
In New Mexico, Mexican spotted owls (Strix occidentalis lucida) are typically found in rocky canyons consisting of mixed-conifer forests that have experienced minimal human disturbance. At Los Alamos National Laboratory (LANL), Mexican spotted owls have been found breeding and foraging in habitats consistent with their known biology, but face the impact of human encroachment in the surrounding upland habitat. Little is known about the prey base present within the Laboratory’s vast forests. In anticipation of expanding human development in proximity to known occupied owl habitat, the goal of our study was to evaluate the small mammal prey base available to Mexican spotted owls at the Laboratory and to assess prey availability, diversity and composition. We sampled two study plots within the Laboratory’s forests for small mammals in 2021. Study plots were situated in conifer, deciduous, mixed conifer-deciduous and mixed oak. Our small mammal trapping efforts and SCR modeling revealed site-specific differences in prey base diversity, abundance and density between the unoccupied Pajarito Canyon and nearby occupied Mortandad Canyon site. These results highlight how managing tracts of land for small mammal prey base may overlap with goals set forth by researchers for Mexican spotted owl habitat needs. We recommend further trapping efforts to better understand prey availability in occupied and unoccupied sites at LANL as well as further investigation of prey selection through the dissection of pellets found in the areas surrounding known nesting locations.
54 ENVIRONMENTAL SCIENCES↗
Photic and circadian regulation of retinal melatonin in mammals
Several studies have established that melatonin synthesis occurs in the retina of vertebrates, including mammals. In mammals, a subpopulation of photoreceptors (probably the cones) synthesize melatonin. Melatonin synthesis in the retina is elevated at night and reduced during the day in a fashion similar to events in the pineal gland. Both the MT1 and MT2 melatonin receptors are present in the retina and retinal melatonin does not contribute to circulating levels, suggesting that retinal melatonin acts locally as a neurohormone and/or neuromodulator. Melatonin synthesis in the retina of mammals is under the control of a circadian oscillator, and circadian rhythms in melatonin synthesis and/or release have been described for several species of mammals. These rhythms are present in vivo, persist in vitro, are entrained by light and are temperature compensated. The cloning of the gene responsible for the synthesis of the enzyme arylalkylamine N-acetyltransferase (the key enzyme in the melatonin biosynthetic pathway) has allowed studies of the molecular mechanisms responsible for the generation of retinal melatonin rhythmicity. The present review focuses on the cellular and molecular mechanisms that regulate melatonin synthesis. In particular, we discuss how the photic environment and the circadian clock interact in determining melatonin levels, in addition to the role that melatonin plays in retinal physiology.
NASA Discipline Space Human Factors↗
A new perspective on adiposity in a naturally obese mammal
Many mammals seasonally reduce body fat due to inherent periods of fasting, which is associated with decreased leptin concentrations. However, no data exist on the correlation between fat mass (FM) and circulating leptin in marine mammals, which have evolved large fat stores as part of their adaptation to periods of prolonged fasting. Therefore, FM was estimated (by tritiated water dilution), and serum leptin and cortisol were measured in 40 northern elephant seal (Mirounga angustirostris) pups early (<1 wk postweaning) and late (6-8 wk postweaning) during their natural, postweaning fast. Body mass (BM) and FM were reduced late; however, percent FM (early: 43.9 +/- 0.5, late: 45.5 +/- 0.5%) and leptin [early: 2.9 +/- 0.1 ng/ml human equivalents (HE), late: 3.0 +/- 0.1 ng/ml HE] did not change. Cortisol increased between early (9.2 +/- 0.5 microg/dl) and late (16.3 +/- 0.9 microg/dl) periods and was significantly and negatively correlated with BM (r = 0.426; P < 0.0001) and FM (r = 0.328; P = 0.003). FM and percent FM were not correlated (P > 0.10) with leptin at either period. The present study suggests that these naturally obese mammals appear to possess a novel cascade for regulating body fat that includes cortisol. The lack of a correlation between leptin and FM may reflect the different functions of fat between terrestrial and marine mammals.
Non-NASA Center↗
Land-use history, fire regime, and large-mammal herbivory affect deer-preferred plant diversity in longleaf pine woodlands
Since ecological systems often experience multiple disturbances, understanding changes in important ecological interactions, such as plant-herbivore interactions, may require studies capable of disentangling the unique and interactive effects of multiple forms of disturbance. For example, understanding how mammalian herbivores affect plant communities may require understanding how widespread past disturbances, such as agricultural land use, interact with contemporary disturbances, such as prescribed fire. Here, we tested if past agricultural land use and contemporary fire regime modified the effects of mammalian herbivory on focal plant communities by measuring the richness of plant species preferred by deer at 26 longleaf pine woodlands containing paired open and large-mammal exclusion plots. Land-use history significantly affected the community composition of deer-preferred species, and focal species were 8.19 times more likely to be present in post-agricultural sites than non-agricultural sites. Large-mammal herbivory only affected plant species richness in woodlands with low fire frequencies wherein focal species were on average 2.23 times more likely to be present in exclusion plots than open plots. These results suggest that past and present disturbances can mediate contemporary plant-animal interactions and may explain spatial patterns in the intensity of large-mammal herbivory. Our findings also suggest that common management practices, such as use of prescribed burns, may indirectly promote plant species richness by reducing deer herbivory.
60 APPLIED LIFE SCIENCES↗
Sonic booms and marine mammals: Informational status and recommendations
The topics discussed include the following: introduction to marine mammals; marine mammal hearing; noise effects; sonic booms; sonic boom effects on marine mammals; predictions; and recommendations.
Cummings, William C.↗