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At least 19 records

Improving the Performance of DGEMM with MoA and Cache-Blocking: Preprint

The goal of this paper is to demonstrate performance enhancements of the high performance dense linear algebra matrix-matrix multiply DGEMM kernel, widely implemented by vendors in the basic linear algebra subroutine BLAS library. The mathematics of arrays (MoA) paradigm due to Mullin (1988) results in contiguous memory accesses in combination with Church-Rosser complete language constructs optimized for target processor architectures [3]. Our performance studies demonstrate that the MoA implementation of DGEMM combined with optimal cache-blocking strategies results in at least a 25% performance gain on both Intel Xeon Skylake and IBM Power-9 processors over the vendor supplied Intel MKL and IBM ESSL basic linear algebra libraries. Results are presented for the NREL Eagle and ORNL Summit supercomputers.

cache-blocking↗

MOA-2007-BLG-400 A Super-Jupiter-mass Planet Orbiting a Galactic Bulge K-dwarf Revealed by Keck Adaptive Optics Imaging

We present Keck/NIRC2 adaptive optics imaging of planetary microlensing event MOA-2007-BLG-400 that resolves the lens star system from the source. We find that the MOA-2007-BLG-400L planetary system consists of a 1.71 ± 0.27M {sub Jup} planet orbiting a 0.69 ± 0.04M {sub ⊙} K-dwarf host star at a distance of 6.89 ± 0.77 kpc from the Sun. So, this planetary system probably resides in the Galactic bulge. The planet–host star projected separation is only weakly constrained due to the close-wide light-curve degeneracy; the 2σ projected separation ranges are 0.6–1.0 au and 4.7–7.7 au for close and wide solutions, respectively. This host mass is at the top end of the range of masses predicted by a standard Bayesian analysis. Our Keck follow-up program has now measured lens-source separations for six planetary microlensing events, and five of these six events have host star masses above the median prediction under the assumption that assumes that all stars have an equal chance of hosting planets detectable by microlensing. This suggests that more massive stars may be more likely to host planets of a fixed mass ratio that orbit near or beyond the snow line. These results also indicate the importance of host star mass measurements for exoplanets found by microlensing. The microlensing survey imaging data from NASA’s Nancy Grace Roman Space Telescope (formerly WFIRST) mission will be doing mass measurements like this for a huge number of planetary events.

47 OTHER INSTRUMENTATION↗

Threaded Multi-Core GEMM with MoA and Cache-Blocking: Preprint

A threaded multi-core implementation of the high performance dense linear algebra matrix-matrix multiply GEMM kernel is described. This kernel is widely implemented by vendors in the basic linear algebra subroutine BLAS library. The mathematics of arrays (MoA) paradigm due to Mullin (1988) results in contiguous memory accesses by employing outer-product forms. Our performance studies demonstrate that the MoA implementation of double precision DGEMM combined with optimal cache-blocking strategies results in at least a 25% performance gain on the Intel Xeon Skylake processor over the vendor supplied Intel MKL basic linear algebra libraries. Results are presented for the NREL Eagle supercomputer. The multi-core DGEMM achieves over 100 GigaFlops/sec with eight openMP threads.

cache-blocking↗

Materials Data on MoAs by Materials Project

MoAs is Modderite structured and crystallizes in the orthorhombic Pnma space group. The structure is three-dimensional. Mo3+ is bonded to six equivalent As3- atoms to form a mixture of distorted face, edge, and corner-sharing MoAs6 pentagonal pyramids. There are a spread of Mo–As bond distances ranging from 2.55–2.69 Å. As3- is bonded in a 8-coordinate geometry to six equivalent Mo3+ and two equivalent As3- atoms. Both As–As bond lengths are 2.97 Å.

36 MATERIALS SCIENCE↗

Revisiting MOA 2013-BLG-220L: A Solar-type Star with a Cold Super-Jupiter Companion

We present the analysis of high-resolution images of MOA-2013-BLG-220, taken with the Keck adaptive optics system six years after the initial observation, identifying the lens as a solar-type star hosting a super-Jupiter-mass planet. The masses of planets and host stars discovered by microlensing are often not determined from light-curve data, while the star–planet mass ratio and projected separation in units of Einstein ring radius are well measured. High-resolution follow-up observations after the lensing event is complete can resolve the source and lens. This allows direct measurements of flux, and the amplitude and direction of proper motion, giving strong constraints on the system parameters. Due to the high relative proper motion, μ{sub rel,Geo}=12.62±0.11 mas yr{sup −1}, the source and lens were resolved in 2019, with a separation of 77.1 ± 0.5 mas. Thus, we constrain the lens flux to K{sub Keck,lens}=17.92±0.02. By combining constraints from the model and Keck flux, we find the lens mass to be M{sub L}=0.88±0.05 M{sub ⊙} at D{sub L}=6.72±0.59 kpc. With a mass ratio of q=(3.00±0.03)×10{sup −3} the planet’s mass is determined to be M{sub P}=2.74±0.17 M{sub J} at a separation of r{sub ⊥}=3.03±0.27 au. The lens mass is much higher than the prediction made by Bayesian analysis that assumes all stars have an equal probability to host a planet of the measured mass ratio, and suggests that planets with mass ratios of a few times 10{sup −3} are more common orbiting massive stars. This demonstrates the importance of high-resolution follow-up observations for testing theories like these.

79 ASTRONOMY AND ASTROPHYSICS↗

MOA-2009-BLG-319Lb: A Sub-Saturn Planet inside the Predicted Mass Desert

We present an adaptive optics (AO) analysis of images from the Keck II telescope NIRC2 instrument of the planetary microlensing event MOA-2009-BLG-319. The ∼10 yr baseline between the event and the Keck observations allows the planetary host star to be detected at a separation of 66.5 ± 1.7 mas from the source star, consistent with the light-curve model prediction. The combination of the host star brightness and light-curve parameters yields host star and planet masses of M {sub host} = 0.524 ± 0.048M {sub ⊙} and m {sub p} = 67.3 ± 6.2M {sub ⊕} at a distance of D {sub L} = 7.1 ± 0.7 kpc. The star−planet projected separation is 2.03 ± 0.21 au. The planet-to-star mass ratio of this system, q = (3.857 ± 0.029) × 10{sup −4}, places it in the predicted “planet desert” at 10{sup −4} < q < 4 × 10{sup −4} according to the runaway gas accretion scenario of the core accretion theory. Seven of the 30 planets in the Suzuki et al. sample fall in this mass ratio range, and this is the third with a measured host mass. All three of these host stars have masses of 0.5 ≤ M {sub host}/M {sub ⊙} ≤ 0.7, which implies that this predicted mass ratio gap is filled with planets that have host stars within a factor of two of 1M {sub ⊙}. This suggests that runaway gas accretion does not play a major role in determining giant planet masses for stars somewhat less massive than the Sun. Our analysis has been accomplished with a modified DAOPHOT code that has been designed to measure the brightness and positions of closely blended stars. This will aid in the development of the primary method that the Nancy Grace Roman Space Telescope mission will use to determine the masses of microlens planets and their hosts.

47 OTHER INSTRUMENTATION↗

Effects of marine organic aerosols as sources of immersion-mode ice-nucleating particles on high-latitude mixed-phase clouds

Mixed-phase clouds are frequently observed in high-latitude regions and have important impacts on the surface energy budget and regional climate. Marine organic aerosol (MOA), a natural source of aerosol emitted over ~70 % of Earth's surface, may significantly modify the properties and radiative forcing of mixed-phase clouds. However, the relative importance of MOA as a source of ice-nucleating particles (INPs) in comparison to mineral dust, and MOA's effects as cloud condensation nuclei (CCN) and INPs on mixed-phase clouds are still open questions. In this study, we implement MOA as a new aerosol species into the Community Atmosphere Model version 6 (CAM6), the atmosphere component of the Community Earth System Model version 2 (CESM2), and allow the treatment of aerosol–cloud interactions of MOA via droplet activation and ice nucleation. CAM6 reproduces observed seasonal cycles of marine organic matter at Mace Head and Amsterdam Island when the MOA fraction of sea spray aerosol in the model is assumed to depend on sea spray biology but fails when this fraction is assumed to be constant. Model results indicate that marine INPs dominate primary ice nucleation below 400 hPa over the Southern Ocean and Arctic boundary layer, while dust INPs are more abundant elsewhere. By acting as CCN, MOA exerts a shortwave cloud forcing change of -2.78 W m-2 over the Southern Ocean in the austral summer. By acting as INPs, MOA enhances the longwave cloud forcing by 0.35 W m-2 over the Southern Ocean in the austral winter. The annual global mean net cloud forcing changes due to CCN and INPs of MOA are -0.35 and 0.016 W m-2, respectively. These findings highlight the vital importance for Earth system models to consider MOA as an important aerosol species for the interactions of biogeochemistry, hydrological cycle, and climate change.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Vulnerability of mineral-organic associations in the rhizosphere

The majority of soil carbon (C) is stored in organic matter associated with reactive minerals. These mineral-organic associations (MOAs) inhibit microbial and enzymatic access to organic matter, suggesting that organic C within MOAs is resistant to decomposition. However, plant roots and rhizosphere microbes are known to transform minerals through dissolution and exchange reactions, implying that MOAs in the rhizosphere can be dynamic. Here we identify key drivers, mechanisms, and controls of MOA disruption in the rhizosphere and present a new conceptual framework for the vulnerability of soil C within MOAs. We introduce a vulnerability spectrum that highlights how MOAs characteristic of certain ecosystems are particularly susceptible to specific root-driven disruption mechanisms. This vulnerability spectrum provides a framework for critically assessing the importance of MOA disruption mechanisms at the ecosystem scale. Comprehensive representation of not only root-driven MOA formation, but also disruption, will improve model projections of soil C-climate feedbacks and guide the development of more effective soil C management strategies.

54 ENVIRONMENTAL SCIENCES↗

Electron-Withdrawing meso -Substituents Turn On Magneto-Optical Activity in Porphyrins

A series of square planar metalloporphyrins (M(TPP), TPP is 5,10,15,20-tetraphenylporphyrin and M(TPFPP), TPFPP is 5,10,15,20-tetrapentafluorophenylporphyrin; M is Zn 2+ , Ni 2+ , Pd 2+ , or Pt 2+ ) with distinct meso-substituents were prepared, and their magneto-optical activity (MOA) was characterized by magnetic circular dichroism (MCD) and magneto-optical rotary dispersion spectroscopy (MORD; also known as Faraday rotation spectroscopy). MOA is crucial in the development of next-generation magneto-optical devices and quantum computing. Here, the data show that the presence of meso-pentafluorophenyl substituents results in significant increase in MOA in comparison to the homologous phenyl group. Differences in the MOA of these metalloporphyrins are rationalized using the Gouterman four-orbital model and pave the way for rational design of improved and tailorable magneto-optical materials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Synthetic method of analogues for emerging infectious disease forecasting

The Method of Analogues (MOA) has gained popularity in the past decade for infectious disease forecasting due to its non-parametric nature. In MOA, the local behavior observed in a time series is matched to the local behaviors of several historical time series. The known values that directly follow the historical time series that best match the observed time series are used to calculate a forecast. This non-parametric approach leverages historical trends to produce forecasts without extensive parameterization, making it highly adaptable. However, MOA is limited in scenarios where historical data is sparse. This limitation was particularly evident during the early stages of the COVID-19 pandemic, where the emerging global epidemic had little-to-no historical data. In this work, we propose a new method inspired by MOA, called the Synthetic Method of Analogues (sMOA). sMOA replaces historical disease data with a library of synthetic data that describe a broad range of possible disease trends. This model circumvents the need to estimate explicit parameter values by instead matching segments of ongoing time series data to a comprehensive library of synthetically generated segments of time series data. We demonstrate that sMOA has competitive performance with state-of-the-art infectious disease forecasting models, out-performing 78% of models from the COVID-19 Forecasting Hub in terms of averaged Mean Absolute Error and 76% of models from the COVID-19 Forecasting Hub in terms of averaged Weighted Interval Score. Additionally, we introduce a novel uncertainty quantification methodology designed for the onset of emerging epidemics. Developing versatile approaches that do not rely on historical data and can maintain high accuracy in the face of novel pandemics is critical for enhancing public health decision-making and strengthening preparedness for future outbreaks.

97 MATHEMATICS AND COMPUTING↗

Chickpea NCR13 disulfide cross-linking variants exhibit profound differences in antifungal activity and modes of action

Small cysteine-rich antifungal peptides with multi-site modes of action (MoA) have potential for development as biofungicides. In particular, legumes of the inverted repeat-lacking clade express a large family of nodule-specific cysteine-rich (NCR) peptides that orchestrate differentiation of nitrogen-fixing bacteria into bacteroids. These NCRs can form two or three intramolecular disulfide bonds and a subset of these peptides with high cationicity exhibits antifungal activity. However, the importance of intramolecular disulfide pairing and MoA against fungal pathogens for most of these plant peptides remains to be elucidated. Our study focused on a highly cationic chickpea NCR13, which has a net charge of +8 and contains six cysteines capable of forming three disulfide bonds. NCR13 expression in Pichia pastoris resulted in formation of two peptide folding variants, NCR13_PFV1 and NCR13_PFV2, that differed in the pairing of two out of three disulfide bonds despite having an identical amino acid sequence. The NMR structure of each PFV revealed a unique three-dimensional fold with the PFV1 structure being more compact but less dynamic. Surprisingly, PFV1 and PFV2 differed profoundly in the potency of antifungal activity against several fungal plant pathogens and their multi-faceted MoA. PFV1 showed significantly faster fungal cell-permeabilizing and cell entry capabilities as well as greater stability once inside the fungal cells. Additionally, PFV1 was more effective in binding fungal ribosomal RNA and inhibiting protein translation in vitro. Furthermore, when sprayed on pepper and tomato plants, PFV1 was more effective in reducing disease symptoms caused by Botrytis cinerea, causal agent of gray mold disease in fruits, vegetables, and flowers. In conclusion, our work highlights the significant impact of disulfide pairing on the antifungal activity and MoA of NCR13 and provides a structural framework for design of novel, potent antifungal peptides for agricultural use.

59 BASIC BIOLOGICAL SCIENCES↗

Historic Context, Character-Defining Elements, And Photographic Record For A 26.45-Mile Segment Of The 138-Kilovolt Power Transmission System, Areas 3, 5, 6, And 23, Nevada National Security Site, Nye County, Nevada

The subject of this report is the 138-kilovolt (kV) power transmission line on the Nevada National Security Site (NNSS) (see Figure 1). The NNSS, formerly the Nevada Test Site (NTS), was the main continental nuclear test site for the United States between 1951 and 1992. Known as the battleground of the Cold War, the NNSS hosted a total of 928 nuclear tests during that period. It also served as the location of numerous scientific advancements in the fields of rocketry, big-hole drilling, nuclear waste management, and defense. From its construction in the 1960s through the present day, the 138 kV line has provided electrical power to the numerous buildings, facilities, experiments, and tests on the NNSS. The Department of Energy (DOE), in consultation with the Nevada State Historic Preservation Officer (SHPO), has determined that it may contribute to the character and significance of the Mercury Historic District (MHD) on the NNSS, as well as other historic districts that have not been recorded or evaluated yet. The purpose of this report is to fulfill two of the stipulations in the Memorandum of Agreement DEGM58-22NA25553 between the U.S. Department of Energy and the Nevada State Historic Preservation Officer Regarding Installation of a 138-kilovolt Transmission Line from the Mercury Switching Station to the U1a Facility and the Removal of the Historic 138-kilovolt Transmission Line from the Mercury Switching Station to the U1a Facility in Areas 1, 3, 5, 6, and 23 of the Nevada National Security Site (MOA). The MOA was executed as part of the DOE’s obligations under Section 106 of the National Historic Preservation Act (NHPA) to mitigate the adverse effects of two undertakings on historic properties. In particular, this report fulfills MOA Stipulations III.C.1-3, which state that the Department of Energy (DOE) will prepare the following: A historic context for the 138 kV transmission line and identification of the line’s characterdefining elements; High-quality digital images of the 26.45-mile segment of the 138 kV transmission line that is subject to the two undertakings for which the MOA was executed; and Photograph catalogs and map keys showing photograph viewpoints and directions.

54 ENVIRONMENTAL SCIENCES↗

Plant defensin MtDef4–derived antifungal peptide with multiple modes of action and potential as a bio–inspired fungicide

Chemical fungicides have been instrumental in protecting crops from fungal diseases. However, increasing fungal resistance to many of the single-site chemical fungicides calls for the development of new antifungal agents with novel modes of action (MoA). The sequence-divergent cysteine-rich antifungal defensins with multisite MoA are promising starting templates for design of novel peptide-based fungicides. Here, we experimentally tested such a set of 17-amino-acid peptides containing the γ-core motif of the antifungal plant defensin MtDef4. These designed peptides exhibited antifungal properties different from those of MtDef4. Focused analysis of a lead peptide, GMA4CG_V6, showed that it was a random coil in solution with little or no secondary structure elements. Additionally, it exhibited potent cation-tolerant antifungal activity against the plant fungal pathogen Botrytis cinerea, the causal agent of grey mould disease in fruits and vegetables. Its multisite MoA involved localization predominantly to the plasma membrane, permeabilization of the plasma membrane, rapid internalization into the vacuole and cytoplasm, and affinity for the bioactive phosphoinositides phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. The sequence motif RRRW was identified as a major determinant of the antifungal activity of this peptide. While topical spray application of GMA4CG_V6 on Nicotiana benthamiana and tomato plants provided preventive and curative suppression of grey mould disease symptoms, the peptide was not internalized into plant cells. Our findings open the possibility that truncated and modified defensin-derived peptides containing the γ-core sequence could serve as promising candidates for further development of bio-inspired fungicides.

54 ENVIRONMENTAL SCIENCES↗

A Historic Context and Mitigation Documentation for a Portion of the U12n Tunnel Ventilation and Containment Systems, Area 12, Nevada National Security Site, Nye County, Nevada

The National Nuclear Security Administration Nevada Field Office (NNSA/NFO) has proposed repurposing the U12n Vent Hole #2 (SHPO Resource S2488) and the U12n.10 Vent Hole (S2489) for water sampling in the U12n Tunnel. The vent holes are part of the historic ventilation system for the tunnel and are contributing elements to the U12n Tunnel Historic District (D84). In consultation with the SHPO, NNSA/NFO determined the undertaking will have an adverse effect on the vent holes. The NNSA/NFO and the SHPO negotiated a memorandum of (MOA) with stipulations to mitigate adverse effects. This submission is to comply with the stipulations in the executed Memorandum of Agreement Between the National Nuclear Security Administration Nevada Field Office, Environmental Management Nevada Program Office, and the Nevada State Historic Preservation Officer Regarding Repurposing of Portions of the Ventilation System of the U12n Tunnel Complex Located in Area 12 at the Nevada National Security Site. In accordance with the MOA, the manuscript provides a historic context that describes the development and functioning of the historic U12n Tunnel ventilation system for underground nuclear tests (Stipulation III.C). High resolution digital color images of the vent hole containment doors, nearby elements, and overviews were obtained and keyed to a map and a photo index (Stipulation III.A) (Appendix A). Lastly, Architectural Resource Assessment (ARA) forms were completed for each of the vent holes and Historic District D84 (Stipulation III.B) (Appendix B). The documentation including the historic context report, photographs, image files, and resource forms produced to fulfill the terms of the MOA will be archived with the Nuclear Testing Archive in Las Vegas (Stipulation III.D).

54 ENVIRONMENTAL SCIENCES↗

Historic Significance and Current Condition Assessment of Building 06-CP-170, the Yucca Flat Weather Station, Area 6, Nevada National Security Site, Nye County, Nevada

This report was produced in partial fulfillment of the mitigation of adverse effects to Building 06-CP-170, the Yucca Flat Weather Station on the Nevada National Security Site (NNSS), and is intended to comply with the 2021 Memorandum of Agreement DE-GM58-21NA25543 Between the U.S. Department of Energy and the Nevada State Historic Preservation Officer Regarding Demolition of Fourteen Buildings and Structures in Area 6 of the Nevada National Security Site, Nye County, Nevada (hereafter referred to as the MOA). This MOA was executed to resolve adverse effects from the U.S. Department of Energy (DOE) plan to demolish 14 architectural resources at the Control Point and in the vicinity in Area 6 of the NNSS. The management and operations contractor for the NNSS identified these 14 architectural resources as environmental hazards unsafe for human occupation due to deterioration and rodent infestation. Building 06-CP-170 is scheduled for demolition as part of this undertaking. Building 06-CP-170 was originally recorded in 2018 during a Section 106 cultural resources inventory for a proposed installation of a 138-kilovolt transmission line on the NNSS. The building was determined individually eligible by the DOE, in consultation with the Nevada State Historic Preservation Office, for inclusion in the National Register of Historic Places under the Secretary of the Interior’s Significance Criterion A because of its association with nuclear testing. Pursuant to Stipulation III.D.3 of the MOA, this report provides a summary of the historic significance of Building 06-CP-170 and a description of its current condition and accessory resources. In addition, an updated Architectural Resource Assessment (ARA) form with new information and photographs is included in the appendix in fulfillment of Stipulation III.D.2.

54 ENVIRONMENTAL SCIENCES↗

Historic Significance and Current Condition Assessment of Building 06-CP-10, Device Assembly Building, Area 6, Nevada National Security Site, Nye County, Nevada

This report was produced in partial fulfillment of the mitigation of adverse effects to Building 06-CP-10, the first device assembly building on the Nevada National Security Site (NNSS), and is intended to comply with the 2021 Memorandum of Agreement DE-GM58-21NA25543 Between the U.S. Department of Energy and the Nevada State Historic Preservation Officer Regarding Demolition of Fourteen Buildings and Structures in Area 6 of the Nevada National Security Site, Nye County (hereafter referred to as the MOA). This MOA was executed to resolve adverse effects from the U.S. Department of Energy (DOE) plan to demolish 14 architectural resources at the Control Point and in the vicinity in Area 6 of the NNSS. The management and operations contractor for the NNSS identified these 14 architectural resources as environmental hazards unsafe for human occupation due to deterioration and rodent infestation. Building 06-CP-10 and two small magazine bunkers (06-CP-10A and 06-CP-805) associated with Building 06-CP-10 are scheduled for demolition as part of this undertaking. Building 06-CP-10 was originally recorded in 2003 during a historical evaluation of four buildings in Area 6. In consultation with the Nevada State Historic Preservation Office, the building was determined individually eligible for inclusion in the NRHP under the Secretary of the Interior’s Significance Criterion A because of its association with nuclear testing and under Significance Criterion C as a distinct type of construction associated with the nuclear industry. Building 06-CP-10A, a munitions magazine, and 06- CP-805, a cap-and-fuse bunker, have been recorded as contributing accessory resources to 06-CP-10. Pursuant to Stipulation III.C.3 of the MOA, this report provides a summary of the historic significance of Building 06-CP-10 and a description of its current condition and accessory resources. In addition, an updated Architectural Resource Assessment (ARA) form with new information and photographs is included in the appendix in fulfillment of Stipulation III.C.2.

54 ENVIRONMENTAL SCIENCES↗

An Isolated Stellar-mass Black Hole Detected through Astrometric Microlensing

We report the first unambiguous detection and mass measurement of an isolated stellar-mass black hole (BH). We used the Hubble Space Telescope (HST) to carry out precise astrometry of the source star of the long-duration (t E ≃ 270 days), high-magnification microlensing event MOA-2011-BLG-191/OGLE-2011-BLG-0462 (hereafter designated as MOA-11-191/OGLE-11-462), in the direction of the Galactic bulge. HST imaging, conducted at eight epochs over an interval of 6 yr, reveals a clear relativistic astrometric deflection of the background star's apparent position. Ground-based photometry of MOA-11-191/OGLE-11-462 shows a parallactic signature of the effect of Earth's motion on the microlensing light curve. Combining the HST astrometry with the ground-based light curve and the derived parallax, we obtain a lens mass of 7.1 ± 1.3 M ⊙ and a distance of 1.58 ± 0.18 kpc. We show that the lens emits no detectable light, which, along with having a mass higher than is possible for a white dwarf or neutron star, confirms its BH nature. Our analysis also provides an absolute proper motion for the BH. The proper motion is offset from the mean motion of Galactic disk stars at similar distances by an amount corresponding to a transverse space velocity of ~45 km s -1 , suggesting that the BH received a "natal kick" from its supernova explosion. Previous mass determinations for stellar-mass BHs have come from radial velocity measurements of Galactic X-ray binaries and from gravitational radiation emitted by merging BHs in binary systems in external galaxies. Our mass measurement is the first for an isolated stellar-mass BH using any technique.

79 ASTRONOMY AND ASTROPHYSICS↗

Structural and functional insights into the first Bacillus thuringiensis vegetative insecticidal protein of the Vpb4 fold, active against western corn rootworm

The western corn rootworm (WCR), Diabrotica virgifera virgifera LeConte, is a major maize pest in the United States causing significant economic loss. The emergence of field-evolved resistant WCR to Bacillus thuringiensis (Bt) traits has prompted the need to discover and deploy new insecticidal proteins in transgenic maize. In the current study we determined the crystal structure and mode of action (MOA) of the Vpb4Da2 protein (formerly known as Vip4Da2) from Bt, the first identified insecticidal Vpb4 protein with commercial level control against WCR. The Vpb4Da2 structure exhibits a six-domain architecture mainly comprised of antiparallel β-sheets organized into β-sandwich layers. The amino-terminal domains 1–3 of the protein share structural homology with the protective antigen (PA) PA14 domain and encompass a long β-pore forming loop as in the clostridial binary-toxB module. Domains 5 and 6 at the carboxyl-terminal half of Vpb4Da2 are unique as this extension is not observed in PA or any other structurally-related protein other than Vpb4 homologs. These unique Vpb4 domains adopt the topologies of carbohydrate-binding modules known to participate in receptor-recognition. Functional assessment of Vpb4Da2 suggests that domains 4–6 comprise the WCR receptor binding region and are key in conferring the observed insecticidal activity against WCR. The current structural analysis was complemented by in vitro and in vivo characterizations, including immuno-histochemistry, demonstrating that Vpb4Da2 follows a MOA that is consistent with well-characterized 3-domain Bt insecticidal proteins despite significant structural differences.

59 BASIC BIOLOGICAL SCIENCES↗