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A Look At Topics and Topic Clusters for DOE Laboratories, 1996 - 2021 [Slides]

Beginning in 2018, Elsevier through its Scopus database introduced topics to further refine its classification of publications: Previous classification schemes used concepts such as subject areas, e.g., physics and astronomy, chemistry, computer science, etc.; Topics, in contrast, are much more granular. There are over 96,000 and their titles/contents are very specific, e.g., “Multilayers; Interfaces (materials); Individual layer." Elsevier topic clusters or Clarivate citation topics represent good approaches to examining an institution’s scientific productivity areas. These approaches have the granularity that is not present in the previous categorization approaches used by these databases. The Elsevier topic clusters for the DOE Laboratories do not appear to vary that much over the 1996 – 2021 period. In some cases (ANL, LBNL, LANL, ORNL, and PNNL), there were over 1000 topic clusters at these Laboratories, but a consistent set formed the core of the publication activity. Diversity is viewed as a desirable property of a research portfolio. Examining the balance component of the DOE laboratories, the spread is uneven or not diverse. This may be due to the missions of these laboratories. The balance of a single university was unequal too.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Bounded-Confidence Models of Multidimensional Opinions with Topic-Weighted Discordance

People’s opinions on a wide range of topics often evolve over time through their interactions with others. Models of opinion dynamics primarily focus on one-dimensional opinions, which represent opinions on one topic. However, opinions on various topics are rarely isolated; instead, they can be interdependent and correlated. In a bounded-confidence model (BCM) of opinion dynamics, agents are receptive to each other only if their opinions are sufficiently similar. Here, we extend classical agent-based BCMs—namely, the Hegselmann–Krause BCM, which has synchronous interactions, and the Deffuant–Weisbuch BCM, which has asynchronous interactions—to a multidimensional setting, in which the opinions are multidimensional vectors representing opinions of different topics and opinions on different topics are interdependent. To measure opinion differences between agents, we introduce topic-weighted discordance functions that account for opinion differences in all topics. We define regions of receptiveness for our models, and we use them to characterize the steady-state opinion clusters and provide an analytical approach to compute these regions. In addition, we numerically simulate our models on various networks with initial opinions drawn from a variety of distributions. When initial opinions are correlated across different topics, our topic-weighted BCMs yield significantly different results in both transient and steady states compared to baseline models, where the dynamics of each opinion topic are independent.

Mathematics and Computing↗

Visualizing Temporal Topic Embeddings with a Compass

—Dynamic topic modeling is useful at discovering the development and change in latent topics over time. However, present methodology relies on algorithms that separate document and word representations. This prevents the creation of a meaningful embedding space where changes in word usage and documents can be directly analyzed in a temporal context. This paper proposes an expansion of the compass-aligned temporal Word2Vec methodology into dynamic topic modeling. Such a method allows for the direct comparison of word and document embeddings across time in dynamic topics. This enables the creation of visualizations that incorporate temporal word embeddings within the context of documents into topic visualizations. In experiments against the current state-of-the-art, our proposed method demonstrates overall competitive performance in topic relevancy and diversity across temporal datasets of varying size. Simultaneously, it provides insightful visualizations focused on temporal word embeddings while maintaining the insights provided by global topic evolution, advancing our understanding of how topics evolve over time.

Cluster analysis↗

AI-powered topic modeling: comparing LDA and BERTopic in analyzing opioid-related cardiovascular risks in women

Topic modeling is a crucial technique in natural language processing (NLP), enabling the extraction of latent themes from large text corpora. Traditional topic modeling, such as Latent Dirichlet Allocation (LDA), faces limitations in capturing the semantic relationships in the text document although it has been widely applied in text mining. BERTopic, created in 2022, leveraged advances in deep learning and can capture the contextual relationships between words. In this work, we integrated Artificial Intelligence (AI) modules to LDA and BERTopic and provided a comprehensive comparison on the analysis of prescription opioid-related cardiovascular risks in women. Opioid use can increase the risk of cardiovascular problems in women such as arrhythmia, hypotension etc. 1,837 abstracts were retrieved and downloaded from PubMed as of April 2024 using three Medical Subject Headings (MeSH) words: “opioid,” “cardiovascular,” and “women.” Machine Learning of Language Toolkit (MALLET) was employed for the implementation of LDA. BioBERT was used for document embedding in BERTopic. Eighteen was selected as the optimal topic number for MALLET and 23 for BERTopic. ChatGPT-4-Turbo was integrated to interpret and compare the results. The short descriptions created by ChatGPT for each topic from LDA and BERTopic were highly correlated, and the performance accuracies of LDA and BERTopic were similar as determined by expert manual reviews of the abstracts grouped by their predominant topics. The results of the t-SNE (t-distributed Stochastic Neighbor Embedding) plots showed that the clusters created from BERTopic were more compact and well-separated, representing improved coherence and distinctiveness between the topics. Our findings indicated that AI algorithms could augment both traditional and contemporary topic modeling techniques. In addition, BERTopic has the connection port for ChatGPT-4-Turbo or other large language models in its algorithm for automatic interpretation, while with LDA interpretation must be manually, and needs special procedures for data pre-processing and stop words exclusion. Therefore, while LDA remains valuable for large-scale text analysis with resource constraints, AI-assisted BERTopic offers significant advantages in providing the enhanced interpretability and the improved semantic coherence for extracting valuable insights from textual data.

Research & Experimental Medicine↗

A Geometry-Driven Longitudal Topic Model

A simple and scalable framework for longitudinal analysis of Twitter data is developed that combines latent topic models with computational geometric methods. Dimensionality reduction tools from computational geometry are applied to learn the intrinsic manifold on which the latent, temporal topics reside. Then shortest path distances on the manifold are used to link together these topics. The proposed framework permits visualization of the low-dimensional embedding which provides clear interpretation of the complex, high-dimensional trajectories that may exist among latent topics. Practical application of the proposed framework is demonstrated through its ability to capture and effectively visualize natural progression of latent COVID-19 related topics learned from Twitter data. Interpretability of the trajectories is achieved by comparing to real-world events. In addition, the framework permits study of spatial variation in Twitter behavior for learned topics. The analysis demonstrates that the proposed framework is able to capture granular-level impact of COVID-19 on public discussions. We end by arguing that Twitter data, when analyzed within the proposed framework, can serve as a valuable supplementary data stream for COVID-related studies.

97 MATHEMATICS AND COMPUTING↗

Assessing the evolution of research topics in a biological field using plant science as an example

Scientific advances due to conceptual or technological innovations can be revealed by examining how research topics have evolved. But such topical evolution is difficult to uncover and quantify because of the large body of literature and the need for expert knowledge in a wide range of areas in a field. Using plant biology as an example, we used machine learning and language models to classify plant science citations into topics representing interconnected, evolving subfields. The changes in prevalence of topical records over the last 50 years reflect shifts in major research trends and recent radiation of new topics, as well as turnover of model species and vastly different plant science research trajectories among countries. Our approaches readily summarize the topical diversity and evolution of a scientific field with hundreds of thousands of relevant papers, and they can be applied broadly to other fields.

60 APPLIED LIFE SCIENCES↗

Advanced Energy Topics for Hill District Community Leaders [Slides]

Through Communities LEAP, a community coalition focused on the Hill District neighborhood of Pittsburgh is working with a technical assistance provider network led by the National Renewable Energy Laboratory (NREL). The coalition includes community organizations, nonprofits, the city government, and the utility. Technical assistance provides analysis and information to support Hill District stakeholders in their goals to create informed residential energy efficiency and renewable energy transition strategies that improve housing conditions and lower energy bills, incorporate energy efficiency and renewable energy strategies into existing, community-driven development efforts, and generate quality local jobs. The Advanced Energy Topics resource is intended to support Hill District community leaders with strategic planning on energy-related topics. The topics included are intended to serve as a technical reference for community leaders to help inform decision-making around energy. The Advanced Energy Topics resource was informed by engagement through the Communities LEAP pilot program with three Hill District Registered Community Organizations: the Hill District Collaborative, the Hill District Consensus Group, and the Hill Community Development Corporation.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Topics and Considerations for Developing State Geothermal Regulations

The intent of this document is to provide guidance to states for developing geothermal regulations that would be inclusive of all geothermal technologies (e.g., conventional and non-conventional power production and direct-use applications) with applicability in all states. As part of this project, the NREL project team reviewed and catalogued existing state and federal geothermal regulations, compiled best practices from geothermal and other extractive industries, and established a Geothermal Regulatory Stakeholder Working Group (SWG) to advise and review the geothermal regulatory guidance. The SWG met approximately monthly over the course of one year to review and discuss specific topics as relevant to this geothermal regulatory guidance. This report is broken into five main sections, which were identified in coordination with the SWG as the main topics for inclusion. Within these sections, a list of considerations within each category were identified and, in some cases, relevant examples from existing state and federal geothermal regulations are included to further illustrate the proposed considerations. This report includes the following topics: geothermal resource definition; leasing process; exploration approval process; drilling/wellfield development approval process; and underground injection control process.

15 GEOTHERMAL ENERGY↗

Topics and Considerations for Developing State Geothermal Regulations

The intent of this document is to provide guidance to states for developing geothermal regulations that would be inclusive of all geothermal technologies (e.g., conventional and non-conventional power production and direct-use applications) with applicability in all states. As part of this project, the NREL project team reviewed and catalogued existing state and federal geothermal regulations, compiled best practices from geothermal and other extractive industries, and established a Geothermal Regulatory Stakeholder Working Group (SWG) to advise and review the geothermal regulatory guidance. The SWG met approximately monthly over the course of one year to review and discuss specific topics as relevant to this geothermal regulatory guidance. This report is broken into five main sections, which were identified in coordination with the SWG as the main topics for inclusion. Within these sections, a list of considerations within each category were identified and, in some cases, relevant examples from existing state and federal geothermal regulations are included to further illustrate the proposed considerations. This report includes the following topics: 1) Geothermal Resource Definition; 2) Leasing process; 3) Exploration approval process; 4) Drilling/wellfield development approval process; 5) Underground injection control process In addition, a list of 'key considerations' summarized from this report are included below. This list is not meant to be exhaustive as each state's regulatory landscape is unique, rather these are meant to be concepts that can be considered when developing and/or updating existing geothermal regulations.

drilling↗

Panel Session 36: Hot Topics in US Commercial Low-Level Waste Management

This panel focused on emerging issues in commercial LLW management in the US from the perspective of active members of the Low-Level Radioactive Waste Forum, Inc. State, compact, federal and industry officials shared their views on a variety of timely and significant topics related to low-level radioactive waste management, disposal and related issues. Session no. 36 Co-Chairs, Patricia Holahan and Daniel Shrum, introduced the panelists and provided a summary of the purpose of the session. This Panel Session focused on several current and emerging issues impacting the commercial Low-Level Radioactive Waste (LLRW) management in the US from the perspective of active members of the Low-Level Waste Forum, Inc., States, Compact, as well as Federal and nuclear industries. The panelists provided different perspectives on number of key issues such as: LLW disposal facility status and updates (e.g.; in terms of disposal capacity, plans, and waste acceptance conditions). The panelists also addressed waste disposal rates and potential impacts of ongoing regulatory developments by the NRC and the concerned States. Other timely topics pertaining to the revision of 10CFR Part 61, the Greater-than-Class C (GTCC) and Transuranic (TRU) waste, and Very Low-Level Waste (VLLW) disposal issues were also addressed at this Session. Panelists with presentations: Hot Topics in US Commercial LLW Management (Joe Weismann); Texas LLRW Compact (David Carlson); Texas Low-Level Radioactive Waste Disposal Compact Commission (John Salsman); Barnwell LLRW Disposal Facility (Benjamin Smith, Bill Carver)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Snowmass 2021 Computational Frontier CompF4 Topical Group Report Storage and Processing Resource Access

Computing plays a significant role in all areas of high energy physics. The Snowmass 2021 CompF4 topical group's scope is facilities R&D, where we consider "facilities" as the computing hardware and software infrastructure inside the data centers plus the networking between data centers, irrespective of who owns them, and what policies are applied for using them. In other words, it includes commercial clouds, federally funded High Performance Computing (HPC) systems for all of science, and systems funded explicitly for a given experimental or theoretical program. This topical group report summarizes the findings and recommendations for the storage, processing, networking and associated software service infrastructures for future high energy physics research, based on the discussions organized through the Snowmass 2021 community study.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Phase 3 Randomized Trial of Topical Steroid Versus Placebo for Prevention of Radiation Dermatitis in Patients With Head and Neck Cancer Receiving Chemoradiation

Radiation dermatitis is one of the most common acute toxicities induced by chemoradiation therapy (CRT) for head and neck cancer (HNC). The benefit of topical steroids in the management of radiation dermatitis is still unclear. This phase 3, multi-institutional, randomized, double-blind, placebo-controlled trial evaluated the efficacy and safety of topical steroids for radiation dermatitis in patients with locally advanced HNC receiving CRT.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Preface to Special Topic: New Physics and Materials for Neuromorphic Computation

Artificial Intelligence is a topic that is pervasive in many modern developments and not just confined to science anymore. Many practical applications are based on performing classification tasks inspired by how the natural brain processes information. This current Special Topic on New Physics and Materials for Neuromorphic Computation looks toward solutions for such computational processes that go beyond the currently well-established semiconducting digital computation paradigm.

36 MATERIALS SCIENCE↗

Preface to the Proceedings of the 25th Topical Conference on High-Temperature Plasma Diagnostics

The 25th Topical Conference on High-Temperature Plasma Diagnostics (HTPD 2024) was held in Asheville, NC, USA, at the Renaissance Asheville Downtown Hotel from 21 to 25 April 2024. This biennial conference brings together scientists and engineers from a variety of fields, including magnetic confinement fusion, inertial confinement fusion, space plasmas, astrophysics, and industrial applications, to discuss mutual problems in the development of instrumentation and experimental techniques for the characterization of high-temperature plasmas. As the 25th meeting, HTPD 2024 represents ∼50 years of ongoing international collaboration on these topics.

Biewer, Theodore [ORNL] (ORCID:0000000174563509)↗

Zika discourse in the Americas: A multilingual topic analysis of Twitter

Article Authors Metrics Comments Media Coverage Abstract Introduction Materials and methods Results Discussion Acknowledgments References Reader Comments (0) Media Coverage (0) Figures Abstract This work examines Twitter discussion surrounding the 2015 outbreak of Zika, a virus that is most often mild but has been associated with serious birth defects and neurological syndromes. We introduce and analyze a collection of 3.9 million tweets mentioning Zika geolocated to North and South America, where the virus is most prevalent. Using a multilingual topic model, we automatically identify and extract the key topics of discussion across the dataset in English, Spanish, and Portuguese. We examine the variation in Twitter activity across time and location, finding that rises in activity tend to follow to major events, and geographic rates of Zika-related discussion are moderately correlated with Zika incidence (ρ = .398).

60 APPLIED LIFE SCIENCES↗

Scope and efficacy of the broad-spectrum topical antiseptic choline geranate

Choline geranate (also described as Choline And GEranic acid, or CAGE) has been developed as a novel biocompatible antiseptic material capable of penetrating skin and aiding the transdermal delivery of co-administered antibiotics. The antibacterial properties of CAGE were analyzed against 24 and 72 hour old biofilms of 11 clinically isolated ESKAPE pathogens (defined as Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumanii, Pseudomonas aeruginosa, and Enterobacter sp, respectively), including multidrug resistant (MDR) isolates. CAGE was observed to eradicate in vitro biofilms at concentrations as low as 3.56 mM (0.156% v:v) in as little as 2 hours, which represents both an improved potency and rate of biofilm eradication relative to that reported for most common standard-of-care topical antiseptics in current use. In vitro time-kill studies on 24 hour old Staphylococcus aureus biofilms indicate that CAGE exerts its antibacterial effect upon contact and a 0.1% v:v solution reduced biofilm viability by over three orders of magnitude (a 3log10 reduction) in 15 minutes. Furthermore, disruption of the protective layer of exopolymeric substances in mature biofilms of Staphylococcus aureus by CAGE (0.1% v:v) was observed in 120 minutes. Insight into the mechanism of action of CAGE was provided with molecular modeling studies alongside in vitro antibiofilm assays. The geranate ion and geranic acid components of CAGE are predicted to act in concert to integrate into bacterial membranes, affect membrane thinning and perturb membrane homeostasis. Taken together, our results show that CAGE demonstrates all properties required of an effective topical antiseptic and the data also provides insight into how its observed antibiofilm properties may manifest.

59 BASIC BIOLOGICAL SCIENCES↗

Potential Academic Research Topics of National Security Relevance

Since even before its establishment as an independent national security laboratory in 1949, Sandia has been devoted to an overarching mission of developing advanced technologies for global peace. These technologies have taken a variety of forms, and they exist in and must address an ever-changing global security environment. An understanding of that global security environment and its possible or likely evolution is therefore critical to ensuring that Sandia can maintain its focus on strategic technology investments that will benefit the nation in the next 20- 30 years. Sandia sustains multiple Systems Analysis organizations whose responsibility includes maintaining an understanding of the global security environment as it applies across multiple mission domains. The topics below include two from Sandia's emerging threats and biodefense mission, three with relevance to Sandia's cyber defense mission, and four of particular but not exclusive relevance to Sandia's nuclear deterrence mission. All are intended to spur independent academic thought that could assist Sandia as well as the broader national security community in anticipating and adapting to a continually changing world. Sandia anticipates periodic interactions between Sandia Systems Analysis staff and SciPol Scholars Program faculty and students who choose to expand upon these topics in order to provide opportunities for feedback and communication throughout 2020-2021.

54 ENVIRONMENTAL SCIENCES↗