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Northern Rockies Ecological Conservation: Leveraging Earth Observations to Monitor and Predict Populations of Federally Threatened Whitebark Pine (Pinus albicaulis) across the Intermountain West

Whitebark pine (WBP; Pinus albicaulis) is an ecologically important species in North America. As a federally listed threatened species, an understanding of WBP habitat, distribution, and health is important for the natural resource managers of the National Park Service, United States Forest Service, Bureau of Land Management, Fish and Wildlife Service, and non-profit organizations such as the Whitebark Pine Ecosystem Foundation. Previous attempts to develop models of WBP habitat suitability and distribution lack confidence in their validity and integrity for these organizations. The updated models of habitat suitability and distribution developed by this study would provide managers with a capability to be employed in the conservation and future research direction for WBP. Thus, we developed a habitat suitability model of WBP at a high spatial resolution (Landsat 9 Operational Land Image-2, National Land Cover Database, NASA Shuttle Radar Topography Mission; 30m pixels) using a generalized logistic regression with an area under the curve value of 0.754. We extracted spectral reflectance signatures from overlapped ground sample points and Sentinel-2 Multispectral Instrument. The spectral signature analysis indicates WBP is separable from other tree species. We also utilized a visual validation approach and random forest (RF) modeling to separate WBP from limber pine. Through visual validation the RF classifier successfully identified 8out of 10 WBP trees gathered through ground truth points. Additionally, we achieved an overall accuracy of 91%in our confusion matrix for the distribution model using a dependent validation approach. The derived products from this study allow project partners to assess current suitable habitat and apparent health status in areas of identified WBP occurrence, providing data to aid future research regarding WBP health.

Sentinel-2↗

Comparative Transcriptomics Among Four White Pine Species

Conifers are the dominant plant species throughout the high latitude boreal forests as well as some lower latitude temperate forests of North America, Europe, and Asia. As such, they play an integral economic and ecological role across much of the world. This study focused on the characterization of needle transcriptomes from four ecologically important and understudied North American white pines within the Pinus subgenus Strobus. The populations of many Strobus species are challenged by native and introduced pathogens, native insects, and abiotic factors. RNA from the needles of western white pine (Pinus monticola), limber pine (Pinus flexilis), whitebark pine (Pinus albicaulis), and sugar pine (Pinus lambertiana) was sampled, Illumina short read sequenced, and de novo assembled. The assembled transcripts and their subsequent structural and functional annotations were processed through custom pipelines to contend with the challenges of non-model organism transcriptome validation. Orthologous gene family analysis of over 58,000 translated transcripts, implemented through Tribe-MCL, estimated the shared and unique gene space among the four species. This revealed 2025 conserved gene families, of which 408 were aligned to estimate levels of divergence and reveal patterns of selection. Specific candidate genes previously associated with drought tolerance and white pine blister rust resistance in conifers were investigated.

59 BASIC BIOLOGICAL SCIENCES↗