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Detecting Anomalies from End-to-End Internet Performance Measurements (PingER) Using Cluster Based Local Outlier Factor

PingER (Ping End-to-End Reporting) is a worldwide end-to-end Internet performance measurement framework. It was developed by the SLAC National Accelerator Laboratory, Stanford, USA and running from the last 20 years. It has more than 700 monitoring agents and remote sites which monitor the performance of Internet links around 170 countries of the world. At present, the size of the compressed PingER data set is about 60 GB comprising of 100,000 flat files. The data is publicly available for valuable Internet performance analyses. However, the data sets suffer from missing values and anomalies due to congestion, bottleneck links, queuing overflow, network software misconfiguration, hardware failure, cable cuts, and social upheavals. Therefore, the objective of this paper is to detect such performance drops or spikes labeled as anomalies or outliers for the PingER data set. In the proposed approach, the raw text files of the data set are transformed into a PingER dimensional model. The missing values are imputed using the k-NN algorithm. The data is partitioned into similar instances using the k-means clustering algorithm. Afterward, clustering is integrated with the Local Outlier Factor (LOF) using the Cluster Based Local Outlier Factor (CBLOF) algorithm to detect the anomalies or outliers from the PingER data. Lastly, anomalies are further analyzed to identify the time frame and location of the hosts generating the major percentage of the anomalies in the PingER data set ranging from 1998 to 2016.

97 MATHEMATICS AND COMPUTING↗

A Blockchain-Based Decentralized Data Storage and Access Framework for PingER

The blockchain is an innovative technology which opened doors to new applications for solving numerous problems in distributed environments. In this study, we design a blockchain-based data storage and access framework for PingER (worldwide end-to-end Internet performance measurement project) to remove its total dependence on a centralized repository. We use the permissioned blockchain and Distributed Hash Tables (DHT) for this purpose. In the proposed framework, metadata of the files are stored on the blockchain whereas the actual files are stored off-chain through DHT at multiple locations using a peer-to-peer network of PingER Monitoring Agents. Lastly, this will provide decentralized storage, distributed processing, and efficient lookup capabilities to the PingER framework.

97 MATHEMATICS AND COMPUTING↗

Internet Performance Analysis of South Asian Countries Using End-to-End Internet Performance Measurements

Internet performance is highly correlated with key economic development metrics of a region. According to World Bank, the economic growth of a country increases 1.3% with a 10% increase in the speed of the Internet. Therefore, it is necessary to monitor and understand the performance of the Internet links in the region. It helps to figure out the infrastructural inefficiencies, poor resource allocation, and routing issues in the region. Moreover, it provides healthy suggestions for future upgrades. Therefore, the objective of this paper is to understand the Internet performance and routing infrastructure of South Asian countries in comparison to the developed world and neighboring countries using end-to-end Internet performance measurements. The South Asian countries comprise nearly 32% of the Internet users in Asia and nearly 16% of the world. The Internet performance metrics in the region are collected through the PingER framework. The framework is developed by the SLAC National Accelerator Laboratory, USA and is running for the last 20 years. PingER has 16 monitoring nodes in the region, and in the last year PingER monitors about 40 sites in South Asia using the ubiquitous ping facility. The collected data is used to estimate the key Internet performance metrics of South Asian countries. The performance metrics are compared with the neighboring countries and the developed world. Particularly, the TCP throughput of the countries is also correlated with different development indices. Further, worldwide Internet connectivity and routing patterns of the countries are investigated to figure out the inconsistencies in the region. Furthermore, the performance analysis revealed that the South Asia region is 7-10 years behind the developed regions of North America (USA and Canada), Europe, and East Asia.

97 MATHEMATICS AND COMPUTING↗

Prototype acoustic positioning system for the Pacific Ocean Neutrino Experiment

We present the design and initial performance characterization of the prototype acoustic positioning system intended for the Pacific Ocean Neutrino Experiment. It comprises novel piezo-acoustic receivers with dedicated filtering- and amplification electronics installed in P-ONE instruments and is complemented by a commercial system comprised of cabled and autonomous acoustic pingers for sub-sea installation manufactured by Sonardyne Ltd. We performed an in-depth characterization of the acoustic receiver electronics and their acoustic sensitivity when integrated into P-ONE pressure housings. These show absolute sensitivities of up to -125 dB re V2/μPa2 in a frequency range of 10–40 kHz. We furthermore conducted a positioning measurement campaign in the ocean by deploying three autonomous acoustic pingers on the seafloor, as well as a cabled acoustic interrogator and a P-ONE prototype module deployed from a ship. Using a simple peak-finding detection algorithm, we observe high accuracy in the tracking of relative ranging times at approximately 230–280 μs at distances of up to 1600 m, which is sufficient for positioning detectors in a cubic-kilometer detector and which can be further improved with more involved detection algorithms. The tracking accuracy is further confirmed by independent ranging of the Sonardyne system and closely follows the ship's drift in the wind measured by GPS. The absolute positioning shows the same tracking accuracy with its absolute precision only limited by the large uncertainties of the deployed pinger positions on the seafloor.

Data analysis↗

NSLS-II: Turn-by-Turn BPM Data Analysis – A Use Case Approach

A modern ring-based light source is a complex dynamic system for which the design is guided by a realistic computer model with predictable results. State-of-the-arts beam requirements translate into tight engineering tolerances. So, quality assurance for the equipment, e.g. ring magnets, girder system, power supplies, RF system, etc. is crucial to deliver on the design goals for the beam quality. For a streamlined commissioning and an effective approach for integration of insertion devices, the latter being an activity that is typically on-going for the entire life cycle of the facility, it is equally important to be able to calibrate the beam dynamics design model against the real system and pursue e.g. “gap analysis”, linear and nonlinear optics corrections, improvements to the baseline design, etc. In particular, for high-end insertion devices. Conceptually, it can be thought of as pursuing Model-Based and Adaptive Control; instead of “flying blind”. A straightforward approach is to use a pinger, a ~30 cm long hor/ver kicker that can kick the beam to about 1 mrad in each plane [1-2] and a Turn-by-Turn BPM data acquisition system that records the betatron motion on a Turn-by-Turn basis. Examples include: ALS, SLS, DIAMOND, and SOLEIL. We first outline how to measure the Beam Impulse Response (BIR) function and related Beam Transfer Function (BTF) with a Turn-by-Turn BPM data acquisition system and a pinger. In particular, how to obtain the amplitude and phase of the spectral components in the betatron spectrum with high precision by using signal processing. We also quantify how the impact of noise affects the accuracy of the measurements.

97 MATHEMATICS AND COMPUTING↗

Engineering the hCRBPII Domain-Swapped Dimer into a New Class of Protein Switches

Protein conformational switches or allosteric proteins play a key role in the regulation of many essential biological pathways. Nonetheless, the implementation of protein conformational switches in protein design applications has proven challenging, with only a few known examples that are not derivatives of naturally occurring allosteric systems. In this work, we have discovered that the domain-swapped (DS) dimer of hCRBPII undergoes a large and robust conformational change upon retinal binding, making it a potentially powerful template for the design of protein conformational switches. Atomic resolution structures of the apo- and holo-forms illuminate a simple, mechanical movement involving sterically driven torsion angle flipping of two residues that drive the motion. We further demonstrate that the conformational “readout” can be altered by addition of cross-domain disulfide bonds, also visualized at atomic resolution. Finally, as a proof of principle, we have created an allosteric metal binding site in the DS dimer, where ligand binding results in a reversible 5-fold loss of metal binding affinity. The high resolution structure of the metal-bound variant illustrates a well-formed metal binding site at the interface of the two domains of the DS dimer and confirms the design strategy for allosteric regulation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗