The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource
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Eloe-Fadrosh, Emiley A↗
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Superheavy dark matter through Higgs portal operators
The WIMPzilla hypothesis states that the dark matter is a super-weakly-interacting and super-heavy particle. Conventionally, the WIMPzilla abundance is set by gravitational particle production during or at the end of inflation. In this study we allow the WIMPzilla to interact directly with Standard Model fields through the Higgs portal, and we calculate the thermal production (freeze-in) of WIMPzilla dark matter from the annihilation of Higgs boson pairs in the plasma. The two particle-physics model parameters are the WIMPzilla mass and the Higgs-WIMPzilla coupling. The two cosmological parameters are the reheating temperature and the expansion rate of the universe at the end of inflation. We delineate the regions of parameters space where either gravitational or thermal production is dominant, and within those regions we identify the parameters that predict the observed dark matter relic abundance. Allowing for thermal production opens up the parameter space, even for Planck-suppressed Higgs-WIMPzilla interactions.
79 ASTRONOMY AND ASTROPHYSICS↗
Cyclic (Alkyl)(amino)carbene Ligands Enable Cu-Catalyzed Markovnikov Protoboration and Protosilylation of Terminal Alkynes: A Versatile Portal to Functionalized Alkenes**
Not provided.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Toward a UV model of kinetic mixing and portal matter. III. Relating portal matter and right-handed neutrino masses
Not Available
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
M&V Tool Testing Portal v1
Software is an online self-service portal for testing M&V methods/tools using buildings' interval meter data. After registering as a user in the portal, that user can download test data files, run those test data files through their own M&V software, and then upload software modeling results to the online portal as a csv file. After the user has uploaded their modeling results the portal will develop statistical accuracy metrics for that M&V tool. The online portal will summarize test results for some or all of the submitted tests. This online portal has been developed by LBNL, and we have been collaborating with the Efficiency Valuation Organization (EVO) with the objective of EVO managing the portal as an ongoing service. Portal is currently posted at http://mvportal.evo-world.org/
Cholia, Shreyas↗
Feasibility of Helical I-125 Seed Implant in the Portal Vein
Purpose: To evaluate the feasibility of helical iodine-125 (I-125) seed portal vein implantation. Materials and Methods: Helical I-125 seed implants were placed into the portal vein of healthy pigs through the transjugular (n = 3) or percutaneous transhepatic (n = 3) route. Six pigs received follow-up at 9 weeks after implantation. Blood tests were performed preimplantation, and at 1 and 9 weeks after implantation. Contrast-enhanced computed tomography (CT) and single-photon emission computed tomography combined with CT (SPECT-CT) were acquired after implantation. Post-implantation CT was imported to the treatment planning system (TPS) for dose verification. At 9 weeks after implantation, another CT was performed before histopathological examination. Results: All implantations were successful, and the helical implants were fixed to the portal vein. CT showed no implant migration or portal vein thrombosis. The average dose to 90% of the target volume calculated from TPS was 68.4 Gy. SPECT-CT revealed an irregular isodose around the implant, in which the hottest spot was near the central portal vein lumen. All pigs were in good condition at the 9-week follow-up. Histopathology studies confirmed no portal vein thrombosis. Pigs showed no signs of bleeding, necrosis, or perforation of the peripheral tissue or organs. Intimal hyperplasia was observed at the two ends of the implant. A mild inflammatory response was detected in the bile duct and adjacent liver tissues, yet there was no apparent inflammation of the hepatic arteries. Conclusion: The helical I-125 seed implants can be inserted into the portal veins of healthy pigs.
62 RADIOLOGY AND NUCLEAR MEDICINE↗
Portal protein functions akin to a DNA-sensor that couples genome-packaging to icosahedral capsid maturation
Tailed bacteriophages and herpesviruses assemble infectious particles via an empty precursor capsid (or ‘procapsid’) built by multiple copies of coat and scaffolding protein and by one dodecameric portal protein. Genome packaging triggers rearrangement of the coat protein and release of scaffolding protein, resulting in dramatic procapsid lattice expansion. Here, we provide structural evidence that the portal protein of the bacteriophage P22 exists in two distinct dodecameric conformations: an asymmetric assembly in the procapsid (PC-portal) that is competent for high affinity binding to the large terminase packaging protein, and a symmetric ring in the mature virion (MV-portal) that has negligible affinity for the packaging motor. Modelling studies indicate the structure of PC-portal is incompatible with DNA coaxially spooled around the portal vertex, suggesting that newly packaged DNA triggers the switch from PC- to MV-conformation. Thus, we propose the signal for termination of ‘Headful Packaging’ is a DNA-dependent symmetrization of portal protein.
59 BASIC BIOLOGICAL SCIENCES↗
Radionuclide identification algorithm for organic scintillator-based radiation portal monitor
We have developed an algorithm for on-the-fly radionuclide identification for radiation portal monitors using organic scintillation detectors. The algorithm was demonstrated on experimental data acquired with our pedestrian portal monitor on moving special nuclear material and industrial sources at a purpose-built radiation portal monitor testing facility. The experimental data also included common medical isotopes. The algorithm takes the power spectral density of the cumulative distribution function of the measured pulse height distributions and matches these to reference spectra using a spectral angle mapper. F-score analysis showed that the new algorithm exhibited significant performance improvements over previously implemented radionuclide identification algorithms for organic scintillators. Reliable on-the-fly radionuclide identification would help portal monitor operators more effectively screen out the hundreds of thousands of nuisance alarms they encounter annually due to recent nuclear-medicine patients and cargo containing naturally occurring radioactive material. Lastly, portal monitor operators could instead focus on the rare but potentially high impact incidents of nuclear and radiological material smuggling detection for which portal monitors are intended.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
Portal Monitoring Considerations for Treaty Verification Applications
Portal monitoring is one method in a suite of options for treaty verification and can assist in verification of treaty accountable items (TAIs). Portal monitor technology spans a wide range of sensors, including radiation detectors, break-beams, or weight sensors. For radiation-detecting portal monitors, they are able to confirm absence / presence of a radiological signature and to track TAI direction of motion. Portal monitoring uses measurements from strategically placed sensors (e.g., radiation detectors) to record the entry or egress of TAIs. The implementation of portal monitoring relies on three key elements: perimeter definition, portal locations, and sensor technology, and can be implemented in either time-bound or continuous operations depending on what is permitted by the Treaty.
98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗
The Modern Research Data Portal: a design pattern for networked, data-intensive science
We describe best practices for providing convenient, high-speed, secure access to large data via research data portals. Here, we capture these best practices in a new design pattern, the Modern Research Data Portal, that disaggregates the traditional monolithic web-based data portal to achieve orders-of-magnitude increases in data transfer performance, support new deployment architectures that decouple control logic from data storage, and reduce development and operations costs. We introduce the design pattern; explain how it leverages high-performance data enclaves and cloud-based data management services; review representative examples at research laboratories and universities, including both experimental facilities and supercomputer sites; describe how to leverage Python APIs for authentication, authorization, data transfer, and data sharing; and use coding examples to demonstrate how these APIs can be used to implement a range of research data portal capabilities. Sample code at a companion web site, https://docs.globus.org/mrdp , provides application skeletons that readers can adapt to realize their own research data portals.
97 MATHEMATICS AND COMPUTING↗
Trans-Splenic Portal Vein Embolization: A Technique to Avoid Damage to the Future Liver Remnant
Portal vein embolization (PVE) induces hypertrophy of the future liver remnant (FLR) in patients undergoing extensive hepatic resection. Portal vein access for PVE via the ipsilateral hepatic lobe (designated for resection) places veins targeted for embolization at acute angles to the access site requiring reverse curve catheters for access. This approach also involves access close to tumors in the ipsilateral lobe and requires care to avoid traversing tumor. Alternatively, a contralateral approach (through the FLR) risks damage to the FLR due to iatrogenic trauma or non-target embolization. Two patients successfully underwent PVE via trans-splenic portal vein access, allowing easy access to the ipsilateral portal veins and eliminating risk of damage to FLR. Technique and advantages of trans-splenic portal vein access to perform PVE are described.
62 RADIOLOGY AND NUCLEAR MEDICINE↗
The Modern Research Data Portal: A Design Pattern for Networked, Data-Intensive Science
Here we describe best practices for providing convenient, high-speed, secure access to large data via research data portals. We capture these best practices in a new design pattern, the Modern Research Data Portal, that disaggregates the traditional monolithic web-based data portal to achieve orders-of-magnitude increases in data transfer performance, support new deployment architectures that decouple control logic from data storage, and reduce development and operations costs. We introduce the design pattern; explain how it leverages high-performance Science DMZs and cloud-based data management services; review representative examples at research laboratories and universities, including both experimental facilities and supercomputer sites; describe how to leverage Python APIs for authentication, authorization, data transfer, and data sharing; and use coding examples to demonstrate how these APIs can be used to implement a range of research data portal capabilities. Sample code at a companion web site, https://docs.globus.org/mrdp, provides application skeletons that readers can adapt to realize their own research data portals.
96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
Identification of mixed sources with an organic scintillator-based radiation portal monitor
We have developed radionuclide identification algorithms for radiation portal monitor applications. One algorithm uses a spectral angle mapper to match the power spectral density of modified cumulative distribution functions of measured pulse height distributions to reference spectra, while the others rely on the decomposition of the observed spectrum as a linear mixture of known radionuclide spectra. Three algorithms were then tested for their ability to perform on-the-fly radionuclide identification on datasets acquired with a liquid organic scintillator-based pedestrian radiation portal monitor on moving special nuclear material and industrial radiological sources, as well as common medical isotopes. We quantified and compared the relative efficacies of the algorithms considered using F-score analysis. Measured radiation sources included 51 g of highly enriched uranium, 6.6 g of weapons grade plutonium, 241 Am, 133 Ba, 57 Co and 137 Cs sources with activities of several hundred kBq, as well as 260 kBq liquid solution samples of the medical isotopes 99m Tc, 111 In, 67 Ga, 123 I, 131 I, and 201 Tl. We achieved 100% positive identification, for three-second measurements of single sources moving at a source-transit speed of 1.2 m/s. For mixed sources with strongest and weakest sources having no more than a 5:1 ratio of detected counts, encouraging positive identification results were achieved with the un-mixing algorithms. Current radiation portal monitor designs suffer from a high incidence rate of nuisance radiation alarms caused in radiation portal monitor primary screenings by recent nuclear medicine patients and cargo containing large amounts of naturally occurring radioactive materials. Integrating reliable on-the-fly radionuclide identification into the radiation portal monitors could lower the number of nuisance alarms requiring time-consuming secondary inspections.
47 OTHER INSTRUMENTATION↗
Architecture of a Data Portal for Publishing and Delivering Open Data for Atmospheric Measurement
Atmospheric data are collected by researchers every day. Campaigns such as GOAmazon 2014/2015 and the Amazon Tall Tower Observatory collect essential data on aerosols, gases, cloud properties, and meteorological parameters in the Brazilian Amazon basin. These data products provide insights and essential information for analyzing and predicting natural processes. However, in Brazil, it is estimated that more than 80% of the scientific data collected are not published due to the lack of web portals that collect and store these data. This makes it difficult, or even impossible, to access and integrate the data, which can result in the loss of significant amounts of information and significantly affect the understanding of the overall data. To address this problem, we propose a data portal architecture and open data deployment that enable Big Data processing, human interaction, and download-oriented approaches with tools that help users catalog, publish and visualize atmospheric data. Thus, we describe the architecture developed, based on the experience of the Atmospheric Radiation Measurement Data Center, which incorporates the principles of FAIR, the infrastructure and content management system for managing scientific data. The portal partial results were tested with environmental data from contaminated areas at the University of São Paulo. Overall, this data portal creates more shared knowledge about atmospheric processes by providing users with access to open environmental data.
96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
Phenomenology of electroweak portal dark showers: high energy direct probes and low energy complementarity
We investigate the phenomenology of a dark QCD sector interacting with the Standard Model (SM) via the electroweak (EW) portals. The portal interactions allow SM bosons, such as Z and h, or additional bosons that mix with them, to decay into dark quarks, producing dark showers. The light dark mesons are expected to be long-lived particles (LLPs), as their decays back to the SM states through the EW-portal interactions typically have macroscopic decay lengths. We focus on dark shower events initiated by various bosons at the Large Hadron Collider (LHC). The most prominent signal is the displaced decay of GeV-scale dark pions as LLPs. Current limits on dark shower signals at LHC detectors are recast from public data to provide simplified limits insensitive to UV physics details. Future limits in the high-luminosity phase and proposed auxiliary detectors are also projected. Additionally, we study the flavor-changing neutral current (FCNC) B decays into dark pions, obtaining both current and projected constraints at the LHC and other facilities. These constraints can be combined for specific models, which are illustrated in two EW-portal benchmarks: one with the heavy doublet fermion mediation and another with the Z′ mediator including a mass mixing. The collider reach shows significant potential to probe the parameter space unconstrained by EW precision tests, highlighting the necessity of dedicated LLP search strategies and facilities.
Dark Matter at Colliders↗
Singleton portals to the twin sector
The mirror twin Higgs framework allows for a natural Higgs mass while being consistent with collider bounds on colored symmetry partners to standard model quarks. This mechanism relies crucially on a discrete symmetry which relates each standard model field to a mirror partner. These partners are charged under gauge groups identical to, but distinct from, those in the standard model. The minimal twin Higgs scenario provides only one low-energy connection between the visible and twin sectors, the light Higgs boson. We present a new class of portals connecting the two sectors, using fields that have no twin partner under the discrete symmetry. Scalar, fermion, and vector states may provide such singleton portals, each with unique features and experimental signatures. The vector portal, in particular, provides a variety of renormalizable interactions relevant for the LHC. We provide concrete constructions of these portals and determine their phenomenology and opportunities to probe the twin sector at the LHC. We also sketch a scenario in which the structure of the twin sector itself can be tested.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗