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An Analysis of Shallow Orographic Cumulus Clouds Observed During the CACTI Field Campaign: A SULI Internship Final Report
In 2018, the Atmospheric Radiation Measurement Aerial Facility (AAF) deployed its G-1 research aircraft to the Sierras de Córdoba mountain range in north-central Argentina to support the research of environmental factors on deep convective cycles as part of the Cloud, Aerosol, and Complex Terrain Interactions (CACTI) field campaign. The aircraft was fitted with a suite of instruments to holistically measure in situ the current state of the atmosphere. In this study, we organize the campaign’s 22 flights by environmental conditions. Data from each flight was transected by the aircraft’s position relative to cloud, allowing for in depth analysis of cloud processing on aerosol populations. My project was a case study of selected flights where warm, shallow orographic cumulus clouds were observed.
Using CRISPR/Cas13a technologies to detect miRNA [DOE SULI Internship Report]
Micro ribonucleic acids (miRNA) give our immune systems the ability to recognize viruses and other pathogens by their complementary single-stranded RNA (ssRNA) produced in the reproduction of the pathogen in our cells. When miRNA of a specific sequence is detected in a cell sample, it can be assumed that the immune system is activated and attempting to track down the infection. This pathway can be utilized to diagnose infection from a pathogen before the individual even develops symptoms, aiding in early disease detection and proper treatment. One of the ways that we can detect miRNA is through an assay of clustered regularly interspaced short palindromic repeats or “CRISPR” and the bacterial protein Cas13a. This report details discoveries made while attempting to optimize this assay for miRNA detection. After looking at several different factors within the assay, it was determined that some factors, such as reporter type and metallic ion concentration, are more impactful on the overall assay sensitivity than other factors, such as the overall concentration of Cas13a, CRISPR RNA (crRNA), or ssRNA reporter. It was also discovered that different sequences with different lengths require renewed optimization efforts, as each target has a unique binding affinity determined by the sequence length and composition. This information is crucial in the development of point of care molecular detection devices as they become sensitive enough to identify pathogens before they spread.
SULI Internship Deliverables (Flow Orifice Design: Measuring Degas Flow of Experiment Loops at the Advanced Test Reactor)
These deliverables present a design for a new orifice flow meter to be installed in three experiment loops at the Advanced Test Reactor. The current configuration of the experiment loop system has an orifice that is not properly sized to the low flow rates of the degas line of the pressurizer system, causing inaccurate flow measurements. Under consideration of flow conditions and system constraints, an iterative procedure was utilized to determine the optimal sizing for a new orifice. This orifice is designed to accurately and precisely measure the flow rate of the degas line, which will consequently improve control of the pressure and chemistry of the loop pressurizer system. The scope of this project includes recommendations for orifice sizing, material, flange type, face type, and installation location on the loop piping spools. The design is suitable for experiment loops 1D-N, 2B-SE, and 2D-SW and meets all necessary standards.
Custom Current Source Report (SULI)
This is a Science Undergraduate Laboratory Internship (SULI) report. This report is submitted to the DOE as a summary of the work that I have completed over the course of my internship.
Ion Mobility Spectrometry Characterization of the Intermediate Hydrogen-Containing Gold Cluster Au7(PPh3)7H52+
We employ ion mobility spectrometry and density functional theory to determine the structure of Au7(PPh3)7H52+ (PPh3 = triphenylphosphine) which was recently identified by high mass resolution mass spectrometry. Experimental ion-neutral collision cross sections represent the momentum transfer between the ionic clusters and gas molecules averaged over the relative thermal velocities of the colliding pair, thereby providing structural insights. Theoretical calculations indicate the geometry of Au7(PPh3)7H52+ is similar to Au7(PPh3)7+, with three hydrogen atoms bridging two gold atoms and two hydrogen atoms forming single Au–H bonds. Collision induced dissociation products observed during IMS experiments reveal that smaller hydrogen containing clusters may be produced through fragmentation of Au7(PPh3)7H52+. Our findings indicate that hydrogen containing species like Au7(PPh3)7H52+ act as intermediates in the formation of larger phosphine ligated gold clusters. These results advance the understanding and ability to control the mechanisms of size selective cluster formation which is necessary for scalable synthesis of clusters with tailored properties. This work was supported by the U.S. Department of Energy (DOE), Office of Science, Office of Basic Energy Sciences, Division of Chemical Sciences, Geosciences, and Biosciences. M.A.H. acknowledges support from the DOE Science Undergraduate Laboratory Internship (SULI) program. H.H. acknowledges support from the DOE Office of Workforce Development for Teachers and Scientist (WDTS) under the Visiting Faculty Program (VFP). The efforts of K.A.M. and B.H.C. were supported by the Defense Threat Reduction Agency (Grant No. HDTRA1-14-1-0023). The research was performed using EMSL, a national scientific user facility sponsored by the DOE’s Office of Biological and Environmental Research and located at Pacific Northwest National Laboratory (PNNL). PNNL is operated by Battelle for DOE under Contract DE-AC05-76RL01830.
ESI-MS Identification of the Cationic Phosphine-Ligated Gold Clusters Au1-Au22: Insight into the Gold-Ligand Ratio and Abundance of Larger Clusters
Triphenylphosphine (PPh3)-ligated gold clusters offer promising potential applications due to their relative ease of synthesis and usefulness in forming advanced cluster architectures. While previous studies reported cationic PPh3-ligated gold clusters with core sizes of Au1 - Au4, Au6 - Au11, and Au¬13 - Au14, there has not been definitive identification by mass spectrometry of larger clusters in the Au12 - Au25¬ range. Herein, we survey a polydisperse solution of cationic PPh3-ligated gold clusters using high mass-resolution (M/?M = 60,000) electrospray ionization mass spectrometry (ESI-MS). To improve the sensitivity and mass resolution of larger clusters for unambiguous identification, we increased the number of scan averages and reduced the range of mass collection windows to 200 m/z, thereby mitigating potential mass and ion abundance bias resulting from smaller “building block” gold clusters and other solution components present in higher abundance. In addition to the previously reported clusters, we identified several new species including Au5(PPh3)5+, Au12(PPh3)9HCl2+, Au15(PPh3)9Cl2+, Au16(PPh3)10Cl22+, Au17(PPh3)113+, Au18(PPh3)102+, Au19(PPh3)10Cl2+, Au20(PPh3)12H33+, Au21(PPh3)10Cl2+, and Au22(PPh3)10Cl22+, indicating that a full range of clusters between Au1 - Au22 may be observed in a single polydisperse solution. Considering all of the observed clusters, our findings provide evidence that the “magic number” icosahedral Au13 may be the transition point in cluster growth between smaller clusters, exhibiting a 1:1 gold-to-ligand ratio, and larger clusters, wherein subsequent gold atoms are added to the core without an equal number of accompanying ligands. Our method demonstrates that reducing the range of m/z collection windows and increasing the number of scan averages can improve instrument sensitivity for cationic gold clusters and enable a more complete survey of polydisperse solutions, thereby providing new insights to guide and validate the results of other characterization methods and theoretical calculations. This work was supported by the US Department of Energy (DOE), Office of Science, Office of Basic Energy Sciences, Division of Chemical Sciences, Geosciences, and Biosciences. MH acknowledges support from the DOE Science Undergraduate Laboratory Internship (SULI) program. HH acknowledges support from the DOE Office of Workforce Development for Teachers and Scientist (WDTS) under the Visiting Faculty Program (VFP). This work was performed using EMSL, a national scientific user facility sponsored by the DOE's Office of Biological and Environmental Research and located at Pacific Northwest National Laboratory (PNNL). PNNL is a multiprogram national laboratory operated for DOE by Battelle.
Bi-metallic Nanoparticle Synthesis for Advanced Manufactured Melt Wires
Science Undergraduate Laboratory Internship (SULI) Program Report: Additive manufacturing (AM) based on direct-write technologies has emerged as the predominant method for the fabrication of passive sensors for the harsh operating environments seen in a nuclear reactor. Through the modification of previous methods, Idaho National Laboratory and Villanova University have improved the synthesis process for AM feedstock, which will allow for the improvement of advanced nuclear sensors and instrumentation. A major part of this work includes the synthesis process of relevant AM compatible feedstock to support the development, fabrication, and testing of AM sensors for peak temperature detection. For this report, bismuth, bismuth/platinum, tin, tin/silver, tin/zinc, indium, and indium/silver bi-metallic nanoparticles were synthesized using the polyol method, which will enhance temperature sensitivity and allow for miniaturization. To characterize the synthesized nanoparticles, we used x-ray fluorescence to evaluate the elemental composition of the nanoparticles and differential scanning calorimetry and thermogravimetric analysis to determine the melting point and mass loss of the samples. Results show that bi-metallic nanoparticles are a viable option for the fabrication of high-resolution AM melt wires. The temperature sensitivity can be brought to within 5°C and melt wires can be fabricated that are in the micrometer scale. This will expand the range of irradiation experiments melt wires can be used for and the measured temperature will be significantly more accurate.
SULI Research Report Paper
The Intelligence and Space Research Group 4 (ISR-4) at the Los Alamos National Laboratory focuses on signal processing and developing space electronics for various national security missions. The Space and Atmospheric Burst Reporting System (SABRS) is a sensing payload designed for nuclear detonation detection. As the sensors from previous payloads become obsolete, the requirement for a novel payload design increases. SABRS Prime is the successor to the previous SABRS payloads and is scheduled for delivery in 2028. As part of the SABRS Prompt Gamma Instrument Interface Board, high frequency signals from silicon photomultiplier tubes need to be split and subsequently transmitted to the Analog to Digital Converter. Prior to developing the Space Grade Instrument Interface Board, evaluation modules with Commercial off-the-shelf (COTS) components are evaluated and tested under rigorous conditions. Verification of power levels and gain specifications are some of the important steps taken during the evaluation stage. Working on the Signal Splitting Board has enabled me to work with various schematic software applications and learn more about the processes behind designing space grade electronic components. In addition, I conducted research on efficiency improvements for space-based power systems. Changes in design approaches were found to be the most significant sources of improvement. Being able to interact with researchers and peers across various scientific disciplines has given me a better insight into my future pursuits. Working in a R&D environment has cemented my decision to work on space applications for Quantum Sensing and pursue a PhD in Electrical Engineering. The SULI internship program at the Los Alamos National Laboratory has helped me develop the skillset of a researcher, understand the rigorous processes behind developing space grade hardware, and improve my critical thinking abilities to support the development of reliable instrumentation for deep space missions.
Geant4 Simulations and Experimental Results for the Pacific-Ocean Neutrino Experiment (P-ONE)
The Pacific-Ocean Neutrino Experiment (P-ONE) is an upcoming large-volume neutrino telescope planned to be built off the coast of Vancouver Island, Canada. It aims to detect high-energy neutrinos via the Cherenkov radiation produced in water by secondary particles born from high-energy neutrino interactions. Its first set of detectors is planned to be commissioned this year. However, since the telescope is still in its early stages of development, many tests and simulations must still be run to characterize the efficacy of the detectors. One necessary simulation must be devoted towards examining whether the polarization of the incoming Cherenkov light impacts the strength of the signals by the PMTs, and it must be supported by experimental data. In this report, I detail what I have completed during my SULI internship at the Los Alamos National Lab (LANL); I present the preliminary results of a Geant4 polarization simulation as well as preliminary laboratory measurements that will later be used to inform the future P-ONE design.
Real-Time Anomaly Detection for Beyond Standard Model Searches in ProtoDUNE Horizontal Drift
This paper summarizes work conducted throughout a SULI internship at Fermi National Accelerator Laboratory focused on building an unsupervised machine learning model for real-time anomaly detection in ProtoDUNE Horizontal Drift. Using simulated data, we trained an autoencoder model on a pure cosmic dataset, and evaluated it on both cosmic and neutrino events---making the model an anomaly detector. The goal was to make a model which matches or exceeds the current ADC Simple Window trigger algorithm so that our model can perform at the same rate but provide sensitivity to potential beyond-the-Standard-Model (BSM) signatures. In the end, we were able to construct a model which slightly exceeds the capabilities of the ADC Simple Window while remaining completely unsupervised, achieving $31.9 \pm 0.2$\% ($26.6 \pm 0.2$\%) $\nu$ efficiency at 5 Hz (2 Hz), a 3.6 (3.2) percentage point increase. Additionally, $17.5 \pm 0.3$\% ($18.3 \pm 0.3$\%) of the events that passed the autoencoder at 5 Hz (2 Hz) were missed by the current trigger algorithm. Future work will investigate alternative normalization methods, including quantile transformation, and evaluate the model on ProtoDUNE-HD detector-glitch data if that data becomes available.
Real-Time Anomaly Detection for Beyond Standard Model Searches in ProtoDUNE Horizontal Drift
This paper summarizes work conducted throughout a SULI internship at Fermi National Accelerator Laboratory focused on building an unsupervised machine learning model for real-time anomaly detection in ProtoDUNE Horizontal Drift. Using simulated data, we trained an autoencoder model on a pure cosmic dataset, and evaluated it on both cosmic and neutrino events---making the model an anomaly detector. The goal was to make a model which matches or exceeds the current ADC Simple Window trigger algorithm so that our model can perform at the same rate but provide sensitivity to potential beyond-the-Standard-Model (BSM) signatures. In the end, we were able to construct a model which slightly exceeds the capabilities of the ADC Simple Window while remaining completely unsupervised, achieving $31.9 \pm 0.2$\% ($26.6 \pm 0.2$\%) $\nu$ efficiency at 5 Hz (2 Hz), a 3.6 (3.2) percentage point increase. Additionally, $17.5 \pm 0.3$\% ($18.3 \pm 0.3$\%) of the events that passed the autoencoder at 5 Hz (2 Hz) were missed by the current trigger algorithm. Future work will investigate alternative normalization methods, including quantile transformation, and evaluate the model on ProtoDUNE-HD detector-glitch data if that data becomes available.
Simulation Validation for the DUNE Near Detector
DUNE will study neutrino oscillations as they are beamed from Fermilab in Batavia, Illinois, 1300 km away to Sanford Underground Research Facility in South Dakota. However, when preparing for an experiment of this scale, it is crucial that we run simulations to validate the geometry and overall design of the project. This poster is comprised of my work during a 2026 SULI internship at Fermilab, involving reading the simulated data and assessing its validity.
Summer 2025 SULI: Nucleus ID, TinyTPC, and Scientific Communication
This paper summarizes my work during the Summer 2025 SULI internship, which focused on two main projects and broader scientific development. The first project involved improving the particle identification (PID) of protons, deuterons, and tritons using PIDA distributions and template fitting, with the goal of modeling nuclear final-state interactions (FSI) and testing the robustness of the method against systematic uncertainties. These techniques pave the way for future application to LArTPC data from the ICARUS detector. The second project centered on the optimization and data-taking of the TinyTPC detector, a compact LArTPC used for high-resolution low-energy measurements. I adjusted gain and threshold parameters, performed hardware validation tests, and developed analysis strategies to extract meaningful physics from collected data. Throughout the summer, I also enhanced my scientific communication and mentorship skills through presentations, collaborative analysis, and peer guidance.
Real-Time Anomaly Detection for Searches Beyond the Standard Model in the ProtoDUNE Horizontal Drift Detector
This paper summarizes work conducted throughout a SULI internship at Fermi National Accelerator Laboratory focused on building an unsupervised machine learning model for real-time anomaly detection in ProtoDUNE Horizontal Drift. Using simulated data, we trained an autoencoder model on a pure cosmic dataset, and evaluated it on both cosmic and neutrino events—making the model an anomaly detector. The goal was to make a model which matches or exceeds the current ADC Simple Window trigger algorithm so that our model can perform at the same rate but provide sensitivity to potential beyond-the-Standard-Model (BSM) signatures. In the end, we were able to construct a model which slightly exceeds the capabilities of the ADC Simple Window while remaining completely unsupervised, achieving 31.9 ± 0.2% (26.6 ± 0.2%) ν efficiency at 5 Hz (2 Hz), a 3.6 (3.2) percentage point increase. Additionally, 17.5 ± 0.3% (18.3 ± 0.3%) of the events that passed the autoencoder at 5 Hz (2 Hz) were missed by the current trigger algorithm. Future work will investigate alternative normalization methods, including quantile transformation, and evaluate the model on ProtoDUNE-HD detector-glitch data if that data becomes available.
Radiological Degradation of Tetraoctyl Diglycolamide in n-Alkyl Solvents: Influence of Solvent Ionization Potential
Reprocessing of used nuclear fuel reduces the requirements for long-term storage repositories. Cost-efficient processes depend on knowledge of radiation effects, but gaps occur in understanding how radiation results in the degradation of fuel separation molecules. This project investigates the influence of different n-alkyl solvents on the radiolytic fragmentation behavior of N,N,N',N'-Tetraoctyl-3-oxapentane-1,5-diamide (TODGA), a promising ligand for extraction of the lanthanides and minor actinides from dissolved nuclear fuel. Findings from this work suggest a linkage between the ionization potential of the solvent and the degradation products observed in the resulting mass spectrum.
Charting the unknown: A dive into the world of standards mapping
When you hear standards mapping what do you think about? For the Secure Software Central (SSC) project this means comparing our process to the National Institute of Standards and Technology’s (NIST) security control catalog. So how is it done? The project completed this summer can be broken down into three simple phases. Phase one consists of mapping the SSC process to the NIST’s security control catalog. While phase two entails mapping mitigations from a threat profile to NIST. Lastly phase three requires the creation of a knowledge base allowing for the reuse of controls across numerous projects This project presented a few different challenges: locating the correct control within the NIST catalog while correctly matching the proposed mitigations from the SSC team, accurately leveling the mitigation to the security level of the system, creating a toolbox to showcase a dataset of mitigations and standards to be used in current and future projects. each challenge allowed for opportunities in growth and understanding of how security controls can map to a governing set of standards. These standards maps are a crucial element to support the insights provided by the SSC team and allow the client to have confidence in the work being completed. My internship has allowed me to set and achieve many goals such as coming to understand that the field of cybersecurity truly is the right place for me. I have also learned that it’s ok to be wrong if you learn something from it. For significant accomplishments I have helped integrate standards mapping into the fabric of SSC. The field experience that I have gained such as interacting with the SSC team along with other senior staff and building a good rapport are crucial skills to. This time at PNNL has been an irreplaceable experience.
Mu2e otsdaq Documentation and Online Reconstruction Analytics
This report outlines the results of the DOE-funded SULI (Science Undergraduate Laboratory Internship) research completed over the summer 2024 on site at Fermilab. The project focused on the \textit{otsdaq} software responsible for data acquisition. The project included drafting updated documentation for new users including new procedures relevant for the Alma-Linux 9 operating system update, and the UPS package managing system replacement with spack (scientific software package manager). A new \textit{art} module (ReadTriggerCounts) to track trigger rates was created, with compatibility to be displayed via a Grafana server. The author also assisted in calorimeter cable installation in the detector hall.