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At least 19 records

The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters

Secondary metabolites are small molecules produced by all corners of life, often with specialized bioactive functions with clinical and environmental relevance. Secondary metabolite biosynthetic gene clusters (BGCs) can often be identified within DNA sequences by various sequence similarity tools, but determining the exact functions of genes in the pathway and predicting their chemical products can often only be done by careful, manual comparative analysis. To facilitate this, we report the first release of the secondary metabolism collaboratory (SMC), which aims to provide a comprehensive, tool-agnostic repository of BGC sequence data drawn from all publicly available and user-submitted bacterial and archaeal genome and contig sources. On the website, users are provided a searchable catalog of putative BGCs identified from each source, along with visualizations of gene and domain annotations derived from multiple sequence analysis tools. SMC’s data is also available through publicly-accessible application programming interface (API) endpoints to facilitate programmatic access. Users are encouraged to share their findings (and search for others’) through comment posts on BGC and source pages. At the time of writing, SMC is the largest repository of BGC information, holding 13.1M BGC regions from 1.3M source sequences and growing, and can be found at https://smc.jgi.doe.gov.

59 BASIC BIOLOGICAL SCIENCES

SPC-70791 Rev 0 MARVEL Inert Gas Subsystem, Secondary Coolant Management Subsystem, and Secondary Coolant Cover Gas Subsystem Tubing and Valve Specification

This specification covers the requirements and details for the selection, testing, cleaning, marking, shipping, inspection and installation (including welding) of the Inert Gas Subsystem, Secondary Coolant Management Subsystem, and Secondary Cover Gas Management Subsystem from the Valve Panel up to the classification division, the patch panel of the upper confinement. Including NaK, argon, eutectic gallium indium tin (eGaInSn), and helium fill tubing, valves, and hangers. These systems consist of the necessary straight lengths, elbows, reducers, fittings, tube connections, instrument taps, and valves called for by applicable drawings. All components shall be procured as ASME Section III Class 2 unless otherwise modified hereinafter. Pressure relief valves have been sized to prevent overpressure in the event there is full regulator flow. This is documented in ECAR-7365.

21 - SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLAN

Output Current Estimation and Control in Primary Side LCC Secondary Side Series Compensated Wireless Power Transfer System without Secondary Side Sensors

The estimation (and control) of the output variables is often challenging for wireless power transfer (WPT) systems. This paper presents a secondary side sensor-less closed loop estimation technique to estimate the output current in a primary side LCC and secondary side series compensated WPT system. Using information of primary side variables, the proposed estimation can estimate the output current over a wide range of load current variations. Results are presented to verify the efficacy of the proposed estimation.

Mukherjee, Subho [ORNL] (ORCID:0009000672297925)

Data for The Stem Cell-Type Transcriptome of Bioenergy Sorghum Reveals the Spatial Regulation of Secondary Cell Wall Networks

Bioenergy sorghum is a low-input, drought-resilient, deep-rooting annual crop that has high biomass yield potential enabling the sustainable production of biofuels, biopower, and bioproducts. Bioenergy sorghum’s 4-5 m stems account for ~80% of the harvested biomass. Stems accumulate high levels of sucrose that could be used to synthesize bioethanol and useful biopolymers if information about stem cell-type gene expression and regulation was available to enable engineering. To obtain this information, Laser Capture Microdissection (LCM) was used to isolate and collect transcriptome profiles from five major cell types that are present in stems of the sweet sorghum Wray. Transcriptome analysis identified genes with cell-type specific and cell-preferred expression patterns that reflect the distinct metabolic, transport, and regulatory functions of each cell type. Analysis of cell-type specific gene regulatory networks (GRNs) revealed that unique TF families contribute to distinct regulatory landscapes, where regulation is organized through various modes and identifiable network motifs. Cell-specific transcriptome data was combined with a stem developmental transcriptome dataset to identify the GRN that differentially activates the secondary cell wall (SCW) formation in stem xylem sclerenchyma and epidermal cells. The cell-type transcriptomic dataset provides a valuable source of information about the function of sorghum stem cell types and GRNs that will enable the engineering of bioenergy sorghum stems.

Software

Kinetic Modeling of Secondary Organic Aerosol in a Weather-Chemistry Model: Parameterizations, Processes, and Predictions for GOAmazon

Secondary organic aerosol (SOA) forms and evolves in the atmosphere through many pathways and processes, over diverse spatial and time scales. Hence, there is a need to represent these widely-varying kinetic processes in large-scale atmospheric models to allow for accurate predictions of the abundance, properties, and impacts of SOA. In this work, we integrated a kinetic, process-level model (simpleSOM-MOSAIC) into a weather-chemistry model (WRF-Chem) to simulate the oxidation chemistry and microphysics of atmospheric SOA. simpleSOM-MOSAIC simulates multigenerational gas-phase chemistry, autoxidation reactions, heterogeneous oxidation, oligomerization, and phase-state-influenced gas/particle partitioning of SOA. As a case study, the integrated WRF-Chem-simpleSOM-MOSAIC (WC-SSM) model was used to simulate the photochemical evolution downwind of a large city (Manaus, Brazil) in the Amazon and, in turn, study the anthropogenic and biogenic interactions in an otherwise pristine environment. Consistent with previous work, we found that OA was enhanced by up to a factor of four in the urban plume due to elevated hydroxyl radical (OH) concentrations, relative to the background, and that this OA was dominated by SOA from biogenic precursors (80%). Further, in addition to accurately simulating the OA enhancement in the urban plume, the model reproduced the magnitude of the OA oxygen-to-carbon (O:C) ratio and broadly tracked the evolution of the aerosol size distribution. Our work highlights the importance of including an integrated, kinetic representation of SOA processes in an atmospheric model

54 ENVIRONMENTAL SCIENCES

Investigations of primary and secondary impact structures on the moon and laboratory experiments to study the ejecta of secondary particles

Young lunar impact structures were investigated by using lunar orbiter, Apollo Metric and panorama photographs. Measurements on particularly homogeneous areas low in secondary craters made possible an expansion of primary crater distribution to small diameters. This is now sure for a range between 20m or = D or = 20km and this indicates that the size and velocity distribution of the impacting bodies in the last 3 billion years has been constant. A numerical approximation in the form of a 7th degree polynomial was obtained for the distribution.

Koenig, B.

Evaluation program for secondary spacecraft cells: Evaluation of storage methods, open circuit versus continuous trickle charge, Sonotone 3.5 ampere-hour sealed nickel-cadmium secondary spacecraft cells

Twenty-five cells were used in a five-year test to compare, after each successive one-year storage period, the discharge and charge characteristics of charged cells on open circuit versus that of cells on continuous trickle charge. The test procedure, instrumentation, and results are described. Based on the test results, the following recommendations were made: (1) If the user's purpose will allow a rejuvenation cycle or two after a long storage period, the open circuit regime will likely give slightly greater capacity. (2) If the user's purpose demands immediately available power following a long storage period, the trickle charge method of storage is definitely the regime to use.

Thomas, R. E.

An Updated Secondary Lunar Meteoroid Ejecta Model for Engineering Design

Introduction: The surface of the Moon is constantly being bombarded by a flux of meteoroids of various sizes. Impacts due to these meteoroids produce secondary ejecta material at much lower speeds but with a total mass larger than the original impactor. Details about the secondary ejecta are important for planning missions on the lunar surface. In this work, an updated ejecta model is presented called the Meteoroid Model of Secondary Ejecta (MeMoSeE), to re-place the Apollo-era ejecta model, NASA SP-8013 [1], in the SLS-SPEC 159 Design Specification for Natural Environments (DSNE) [2]. The model pro-duces secondary ejecta flux environments for a user-specified location on the lunar surface, and sorts the incoming secondary flux by angular direction and speed. Methods: MeMoSeE is separated into three parts: the inputs, the conversion step, and the integration of fluxes. Inputs to the model include the primary meteoroid fluxes and the primary near-Earth object (NEO) fluxes. Meteoroid fluxes, both asteroidal and cometary, are calculated using the Meteoroid Engineering Model (MEM3) [3] for different locations on the Moon. For each surface location, an ephemeris is generated using the JPL HORIZONS System [4] that feeds into MEM3. The NEO fluxes are approximated by the high-density population of MEM3 (i.e., only the directionality), where the speed distribution of the NEO fluxes is renormalized to match observations [5]. The regolith properties are used as defined in the DSNE [2]. The conversion step utilizes scaling laws given by Housen & Holsapple 2011 [6] to convert the primary impactor flux to the total mass of secondary ejecta. The ejecta distribution, at the point-of-impact (POI), is separated into a zenith angle and azimuthal angle distribution. The zenith angle distribution follows a beta distribution where the peak depends on the impact altitude angle and the impact azimuth [7]. We employ an ejecta azimuth distribution that is based on Rival & Mandeville 1999 [8] which focuses ejecta in the downstream direction for more oblique impacts. Finally, during the integration step, we sum secondary ejecta number fluxes at a particular region-of-interest (ROI) that originated from many POI locations over the entire surface of the Moon. We keep track of both altitude and azimuth angle bins as well as a range of speed bins, following the igloo gridding as done in MEM3 [9]. The ejecta particle size distribution and density is assumed to be the same as the lunar regolith [10, 2]. Results: The primary fluxes are computed for one Metonic cycle (19 years) for various locations over the lunar surface with a fixed orientation. Both the angular and speed distributions of the primary fluxes are dependent on the latitude and longitude. The over-all primary fluxes show a roughly 13% increase from the eastern limb to the western limb. In general, the speed distribution of the secondary fluxes span from a user-defined minimum speed to the escape speed of the Moon (2.38 km/s), roughly following a power-law relation [6]. Different parts of the speed distribution come from different primary impact locations on the Moon. The secondary ejecta is dominated by the slowest speeds, where these particles originate nearby the ROI. For speeds around 71% of the escape speed, the secondary ejecta originates from locations near the antipodal point. On the other hand, for secondary ejecta speeds that exceed roughly 90% the escape speed, the ejecta particles come from all over the lunar surface to the ROI. Comparing the secondary ejecta fluxes from MeMoSeE with NASA SP-8013 [1], there is a reduction by about 2-3 orders of magnitude for secondary ejecta particles greater than 1 µg. These estimates agree with recent findings from Bjorkman & Christiansen 2019 [11]. The secondary ejecta fluxes are also compared with the primary fluxes, where the ejecta fluxes are roughly an order of magnitude greater than the primary fluxes. References: [1] Cour-Palais, B. G., (1969) NASA SP-8013. [2] NASA SLS-SPEC-159 Rev. H (2020). [3] Moorhead, A. V., et al. (2019) JS&R, 1-17. [4] Giorgini, J. D., (2015) IAUGA, 29, 2256293. [5] Moorhead, A. V., (2020) Memo OSMA/MEO/Lunar-001. [6] Housen, K. R., and Holsapple, K. A., (2011) Icarus, 211(1), 856-875. [7] Gault, D. E., and Wedekind, J. A., (1978) L&PSCP, 9, 3843-3875. [8] Rival, M., and Mandeville, J., (1999) Space Debris, 1(1), 45-57. [9] Moorhead, A. V., (2019) MEM3 User Guide. [10] Carrier, W. D., (1973) The Moon, 6(3-4), 250-263. [11] Bjorkman, M. D. & Christiansen, E. L., (2019) ODC

impacts