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Mapping tall shrub biomass in Alaska at landscape scale using structure-from-motion photogrammetry and lidar

Warming in arctic and boreal regions is increasing shrub cover and biomass. In southcentral Alaska, willow (Salix spp.) and alder (Alnus spp.) shrubs grow taller than many tree species and account for a substantial proportion of aboveground biomass, yet they are not individually measured as part of the operational Forest Inventory and Analysis (FIA) Program. The goal of this research was to test methods for landscape-scale mapping of tall shrub biomass in upper montane and subalpine environments using FIA-type plot measurements (n = 51) and predictor variables from imagery-based structure-from-motion (SfM) and airborne lidar. Specifically, we compared biomass models constructed from imagery acquired by unmanned aerial vehicle (UAV; ~1.7 cm pixels), imagery from the NASA Goddard's Lidar, Hyperspectral, and Thermal Airborne Imager (G-LiHT; ~3.1 cm pixels), and concomitant G-LiHT small-footprint lidar. Tall shrub biomass was most accurately predicted at 5 m resolution (R^2 = 0.81, RMSE = 1.09 kg/sq. m) using G-LiHT SfM color and structure variables. Lidar-only models had lower precision (R^2 = 0.74, RMSE = 1.26 kg/sq. m), possibly due to reduced model information content from variable multicollinearity or lower data density. Separate models for upper montane zones with trees and shrubs and subalpine zones with only shrubs were always chosen over single models based on minimization of Akaike's Information Criterion, indicating the need for variable sets robust to overhanging tree canopy. Decreasing point density from UAV (5000–8000 pts./sq. m) to the G-LiHT SfM point cloud (500–2000 pts./sq. m) had little impact on model fit, suggesting that high-resolution airborne imagery can extend SfM approaches well beyond line-of-sight restrictions for UAV platforms. Overall, our results confirmed that SfM from high-resolution imagery is a viable approach to estimate shrub biomass in the boreal region, especially when an existing lidar terrain model and local field calibration data are available to quantify uncertainty in the SfM point cloud and landscape-scale estimates of shrub biomass.

Michael Alonzo↗

Role of Boreal Vegetation in Controlling Ecosystem Processes and Feedbacks to Climate

In the field, dark respiration rates are greatest in cores from more northerly locations. This is due in part to greater amounts of dwarf shrub biomass in the more northerly cores, but also to differences in soil organic matter quality. Laboratory incubations of these soils under common conditions show some evidence for greater pools of available carbon in soils from more northerly tundra sites, although the most northerly site does not fit this pattern for reasons which are unclear at this time. While field measurements of cores transplanted among different vegetation types at the same location (Toolik Lake) show relatively small differences in whole ecosystem carbon flux, laboratory incubation of these same soils shows that there are large differences in soil respiration rates under common conditions. This is presumably due to differences in organic matter quality. Microenvironmental site factors (temperature, soil moisture, degree of anaerobiosis, etc.) may be responsible for evening out these differences in the field. These site factors, which differ with slope, aspect, and drainage within a given location along the latitudinal gradient, appear to exert at least as strong a control over carbon fluxes as do macroclimatic factors among sites across the latitudinal gradient. While our field measurements indicate that, in the short term, warming will tend to increase ecosystem losses Of CO2 via respiration more than they will increase plant gross assimilation, the degree to which different topographically-defined plant communities will respond is likely to vary.

Chapin, F. S., III↗

Radiative transfer in shrub savanna sites in Niger: Preliminary results from HAPEX-Sahel. Part 3: Optical dynamics and vegetation index sensitivity to biomass and plant cover

A shrub savannah landscape in Niger was optically characterized utilizing blue, green, red and near-infrared wavelengths. Selected vegetation indices were evaluated for their performance and sensitivity to describe the complex Sahelian soil/vegetation canopies. Bidirectional reflectance factors (BRF) of plants and soils were measured at several view angles, and used as input to various vegetation indices. Both soil and vegetation targets had strong anisotropic reflectance properties, rendering all vegetation index (6) responses to be a direct function of sun and view geometry. Soil background influences were shown to alter the response of most vegetation indices. N-space greenness had the smallest dynamic range in VI response, but the n-space brightness index provided additional useful information. The global environmental monitoring index (GEMI) showed a large 6 dynamic range for bare soils, which was undesirable for a vegetation index. The view angle response of the normalized difference vegetation index (NDVI), atmosphere resistant vegetation index (ARVI) and soil atmosphere resistant vegetation index (SARVI) were asymmetric about nadir for multiple view angles, and were, except for the SARVI, altered seriously by soil moisture and/or soil brightness effects. The soil adjusted vegetation index (SAVI) was least affected by surface soil moisture and was symmetric about nadir for grass vegetation covers. Overall the SAVI, SARVI and the n-space vegetation index performed best under all adverse conditions and were recommended to monitor vegetation growth in the sparsely vegetated Sahelian zone.

vanLeeuwen, W. J. D.↗

Effects of fire on composition, biomass, and nutrients in oak scrub vegetation on John F. Kennedy Space Center, Florida

Four stands of oak scrub two, four, eight, and 25 years since fire were sampled with permanent 15 m line transects. Percent cover by species was determined. Plant samples were analyzed for a variety of substances. Transects were resurveyed in 1985 for vegetation parameters. Nutrient pools in biomass were calculated from biomass data and tissue nutrient concentrations. Soil nutrient pools were calculated from nutrient concentrations and bulk density. Species distribution and soil chemical properties were found to be closely related to water table depth. The following fire-related conclusions are reached: (1) major structural changes occur in scrub after fire in that shrub height is reduced and requires four to six years to exceed 1 m; (2) reduction in shrub height affects the suitability of scrub for the Florida scrub jay (3) live biomass increases with time since fire; (4) nutrient concentrations in live biomass do not change with time since fire; (5) species composition and richness are little changed after fire; and (6) imposition of a continued regime of burning on a three-year cycle may have adverse impacts not indicated by the recovery of scrub from a single fire.

Schmalzer, Paul A.↗

Usefulness of Skylab color photography and ERTS-1 multispectral imagery for mapping range vegetation types in southwestern Wyoming

The author has identified the following significant results. Aerial photography at scales of 1:43,400 and 1:104,500 was used to evaluate the usefulness of Skylab color photography (scales of 1:477,979 and 1:712,917) and ERTS-1 multispectral imagery (scale 1:1,000,000) for mapping range vegetation types. The project was successful in producing a range vegetation map of the 68,000 acres of salt desert shrub type in southwestern Wyoming. Techniques for estimation of above-ground green biomass have not yet been confirmed due to the mechanical failure of the photometer used in obtaining relative reflectance measurement. However, graphs of log transmittance versus above-ground green biomass indicate that production estimates may be made for some vegetation types from ERTS imagery. Other vegetation types not suitable for direct ERTS estimation of green biomass may possibly be related to those vegetation types whose production has been estimated from the multispectral imagery.

Gordon, R. C.↗

Inventory and analysis of natural vegetation and related resources from space and high altitude photography

A multiple sampling technique was developed whereby spacecraft photographs supported by aircraft photographs could be used to quantify plant communities. Large scale (1:600 to 1:2,400) color infrared aerial photographs were required to identify shrub and herbaceous species. These photos were used to successfully estimate a herbaceous standing crop biomass. Microdensitometry was used to discriminate among specific plant communities and individual plant species. Large scale infrared photography was also used to estimate mule deer deaths and population density of northern pocket gophers.

Poulton, C. E.↗

Use of AIRSAR to identify woody shrub invasion and other indicators of desertification in the Jornada LTER

The replacement of semidesert grassland by woody shrubland is a widespread form of desertification. This change in physiognomy and species composition tends to sharply reduce the productivity of the land for grazing by domestic livestock, increase soil erosion and reduce soil fertility, and greatly alter many other aspects of ecosystem structure and functioning. Remote sensing methods are needed to assess and monitor shrubland encroachment. Detection of woody shrubs at low density would provide a particularly useful baseline on which to access changes, because an initially low shrub density often tends to increase even after cessation of the disturbance (e.g., overgrazing, drought, or fire suppression) responsible for triggering the initial stages of the invasion (Grover and Musick, 1990). Limited success has been achieved using optical remote sensing. In contrast to other forms of desertification, biomass does not consistently decrease with a shift from grassland to shrubland. Estimation of green vegetation amount (e.g., by NDVI) is thus of limited utility, unless the shrubs and herbaceous plants differ consistently in phenology and the area can be viewed during a season when only one of these is green. The objective of this study was to determine if the potential sensitivity of active microwave remote sensing to vegetation structure could be used to assess the degree of shrub invasion of grassland. Polarimetric Airborne Synthetic Aperture Radar (AIRSAR) data were acquired for a semiarid site containing varied mixtures of shrubs and herbaceous vegetation and compared with ground observations of vegetation type and other landsurface characteristics. In this preliminary report we examine the response of radar backscatter intensity to shrub density. The response of other multipolarization parameters will be examined in future work.

Musick, H. Brad↗

Satellite-Based Evidence for Shrub and Graminoid Tundra Expansion in Northern Quebec from 1986-2010

Global vegetation models predict rapid poleward migration of tundra and boreal forest vegetation in response to climate warming. Local plot and air-photo studies have documented recent changes in high-latitude vegetation composition and structure, consistent with warming trends. To bridge these two scales of inference, we analyzed a 24-year (1986-2010) Landsat time series in a latitudinal transect across the boreal forest-tundra biome boundary in northern Quebec province, Canada. This region has experienced rapid warming during both winter and summer months during the last forty years. Using a per-pixel (30 m) trend analysis, 30% of the observable (cloud-free) land area experienced a significant (p < 0.05) positive trend in the Normalized Difference Vegetation Index (NDVI). However, greening trends were not evenly split among cover types. Low shrub and graminoid tundra contributed preferentially to the greening trend, while forested areas were less likely to show significant trends in NDVI. These trends reflect increasing leaf area, rather than an increase in growing season length, because Landsat data were restricted to peak-summer conditions. The average NDVI trend (0.007/yr) corresponds to a leaf-area index (LAI) increase of ~0.6 based on the regional relationship between LAI and NDVI from the Moderate Resolution Spectroradiometer (MODIS). Across the entire transect, the area-averaged LAI increase was ~0.2 during 1986-2010. A higher area-averaged LAI change (~0.3) within the shrub-tundra portion of the transect represents a 20-60% relative increase in LAI during the last two decades. Our Landsat-based analysis subdivides the overall high-latitude greening trend into changes in peak-summer greenness by cover type. Different responses within and among shrub, graminoid, and tree-dominated cover types in this study indicate important fine-scale heterogeneity in vegetation growth. Although our findings are consistent with community shifts in low-biomass vegetation types over multi-decadal time scales, the response in tundra and forest ecosystems to recent warming was not uniform.

McManus, K. M.↗

Seasonal Distribution of African Savanna Fires

Savannas consist of a continuous layer of grass interspersed with scattered trees or shrubs, and cover approx. 10 million square kilometers of tropical Africa. African savanna fires, almost all resulting from human activities, may produce as much as a third of the total global emissions from biomass burning. Little is known, however, about the frequency and location of these fires, and the area burned each year. Emissions from African savanna burning are known to be transported over the mid-Atlantic, south Pacific and Indian oceans; but to study fully the transport of regional savanna burning and the seasonality of the atmospheric circulation must be considered simultaneously. Here we describe the temporal and spatial distribution of savanna fires over the entire African continent, as determined from night-time satellite imagery. We find that, contrary to expectations, most fires are left to burn uncontrolled, so that there is no strong diurnal cycle in the fire frequency. The knowledge gained from this study regarding the distribution and variability of fires will aid monitoring of the climatically important trace gases emitted from burning biomass.

Cahoon, Donald R.↗

Aboveground carbon loss associated with the spread of ghost forests as sea levels rise

Coastal forests sequester and store more carbon than their terrestrial counterparts but are at greater risk of conversion due to sea level rise. Saltwater intrusion from sea level rise converts freshwater-dependent coastal forests to more salt-tolerant marshes, leaving 'ghost forests' of standing dead trees behind. Although recent research has investigated the drivers and rates of coastal forest decline, the associated changes in carbon storage across large extents have not been quantified. We mapped ghost forest spread across coastal North Carolina, USA, using repeat Light Detection and Ranging (LiDAR) surveys, multi-temporal satellite imagery, and field measurements of aboveground biomass to quantify changes in aboveground carbon. Between 2001 and 2014, 15% (167 km2) of unmanaged public land in the region changed from coastal forest to transition-ghost forest characterized by salt-tolerant shrubs and herbaceous plants. Salinity and proximity to the estuarine shoreline were significant drivers of these changes. This conversion resulted in a net aboveground carbon decline of 0.13 ± 0.01 TgC. Because saltwater intrusion precedes inundation and influences vegetation condition in advance of mature tree mortality, we suggest that aboveground carbon declines can be used to detect the leading edge of sea level rise. Aboveground carbon declines along the shoreline were offset by inland aboveground carbon gains associated with natural succession and forestry activities like planting (2.46 ± 0.25 TgC net aboveground carbon across study area). Our study highlights the combined effects of saltwater intrusion and land use on aboveground carbon dynamics of temperate coastal forests in North America. By quantifying the effects of multiple interacting disturbances, our measurement and mapping methods should be applicable to other coastal landscapes experiencing saltwater intrusion. As sea level rise increases the landward extent of inundation and saltwater exposure, investigations at these large scales are requisite for effective resource allocation for climate adaptation. In this changing environment, human intervention, whether through land preservation, restoration, or reforestation, may be necessary to prevent aboveground carbon loss.

ghost forests↗

Aeronet-based Microphysical and Optical Properties of Smoke-dominated Aerosol near Source Regions and Transported over Oceans, and Implications for Satellite Retrievals of Aerosol Optical Depth

Smoke aerosols from biomass burning are an important component of the global aerosol cycle. Analysis of Aerosol Robotic Network (AERONET) retrievals of size distribution and refractive index reveals variety between biomass burning aerosols in different global source regions, in terms of aerosol particle size and single scatter albedo (SSA). Case studies of smoke transported to coastal/island AERONET sites also mostly lie within the range of variability at near-source sites. Two broad families of aerosol properties are found, corresponding to sites dominated by boreal forest burning (larger, broader fine mode, with midvisible SSA 0.95), and those influenced by grass, shrub, or crop burning with additional forest contributions (smaller, narrower particles with SSA 0.88-0.9 in the midvisible). The strongest absorption is seen in southern African savanna at Mongu (Zambia), with average SSA 0.85 in the midvisible. These can serve as candidate sets of aerosol microphysicaloptical properties for use in satellite aerosol optical depth (AOD) retrieval algorithms. The models presently adopted by these algorithms over ocean are often insufficiently absorbing to represent these biomass burning aerosols. A corollary of this is an underestimate of AOD in smoke outflow regions, which has important consequences for applications of these satellite datasets.

AERONET↗

The red edge in arid region vegetation: 340-1060 nm spectra

The remote sensing study of vegetated regions of the world has typically been focused on the use of broad-band vegetation indices such as NDVI. Various modifications of these indices have been developed in attempts to minimize the effect of soil background, e.g., SAVI, or to reduce the effect of the atmosphere, e.g., ARVI. Most of these indices depend on the so-called 'red edge,' the sharp transition between the strong absorption of chlorophyll pigment in visible wavelengths and the strong scattering in the near-infrared from the cellular structure of leaves. These broadband indices tend to become highly inaccurate as the green canopy cover becomes sparse. The advent of high spectral resolution remote sensing instrument such as the Airborne Visible and Infrared Imaging Spectrometer (AVIRIS) has allowed the detection of narrow spectral features in vegetation and there are reports of detection of the red edge even for pixels with very low levels of green vegetation cover by Vane et al. and Elvidge et al., and to characterize algal biomass in coastal areas. Spectral mixing approaches similar to those of Smith et al. can be extended into the high spectral resolution domain allowing for the analysis of more endmembers, and potentially, discrimination between material with narrow spectral differences. Vegetation in arid regions tends to be sparse, often with small leaves such as the creosote bush. Many types of arid region vegetation spend much of the year with their leaves in a senescent state, i.e., yellow, with lowered chlorophyll pigmentation. The sparseness of the leaves of many arid region plants has the dual effect of lowering the green leaf area which can be observed and of allowing more of the sub-shrub soil to be visible which further complicates the spectrum of a region covered with arid region vegetation. Elvidge examined the spectral characteristics of dry plant materials showing significant differences in the region of the red edge and the diagnostic ligno-cellulose absorptions at 2090 nm and 2300 nm. Ray et al. detected absorption at 2100 nm in AVIRIS spectra of an abandoned field known to be covered by a great deal of dead plant litter. In order to better study arid region vegetation remote sensing data, it is necessary to better characterize the reflectance spectra of in situ, living, arid region plants.

Ray, Terrill W.↗

AIS spectra of desert shrub canopies

Airborne Imaging Spectrometer (AIS) data were collected 30 August 1985 from a desert shrub community in central Oregon. Spectra from artificial targets placed on the test site and from bare soil, big sagebrush (Artemesia tridentata wyomingensis), silver sagebrush (Artemesia cana bolander), and exposed volcanic rocks were studied. Spectral data from grating position 3 (tree mode) were selected from 25 ground positions for analysis by Principal Factor Analysis (PFA). In this grating position, as many as six factors were identified as significant in contributing to spectral structure. Channels 74 through 84 (tree mode) best characterized between-class differences. Other channels were identified as nondiscriminating and as associated with such errors as excessive atmospheric absorption and grating positin changes. The test site was relatively simple with the two species (A. tridentata and A. cana) representing nearly 95% of biomass and with only two mineral backgrounds, a montmorillonitic soil and volcanic rocks. If, as in this study, six factors of spectral structure can be extracted from a single grating position from data acquired over a simple vegetation community, then AIS data must be considered rich in information-gathering potential.

Murray, R.↗

Cropland and Land-Clearing Emission Factors From Firex-AQ

The Fire Influence on Regional to Global Environments and Air Quality (FIREX-AQ) campaign is a NOAA/NASA interagency intensive study of North American fires that took place from July to September 2019. Agricultural fires were sampled on 7 flights from August 21st to September 3rd, 2019. We present emission factors for gas-phase and aerosol-phase species for the different fuel types identified during the campaign. We discuss the dependence of these emission factors on both fuel type and burning characteristics such as modified combustion efficiency (MCE). We analyze 73 fires encompassing four different agricultural fuels (corn, rice, soybean, wheat) and four different types of land-clearing fuels (grass, slash, pile, shrub). Approximately half of all sampled fires were burning corn agricultural residue. We report emission factors for 118 VOCs, where two thirds of emissions are made up of species with lifetimes against oxidation by OH of less than 12 hours (near-field impacts) and the remainder have longer-lifetimes (far-field impacts). We also include an additional 9 aerosol species, 12 halogenated species, 5 sulfur-containing species, and 22 nitrogen-containing species, including NH3 and NOx. There is a statistically significant difference in MCE between agricultural and land-clearing fires that accounts for some of the differences in emission factors across these fuels. VOCs generally have a strong negative correlation with MCE but with different slopes across fuel types. There is a significant positive relationship between MCE and three gas-phase (NO, NO2, SO2) and two aerosol-phase (pCl, pNH4) species. Many emission factors show additional dependence factors beyond MCE that could be related to fuel composition, fire temperature, soil moisture, or other possible differences in burning conditions. Therefore, important differences in emission factors may result when averaging together different types of agricultural and land-clearing fuels in compilations for use in modeling efforts.

biomass burning↗