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Virtual Solar Observatory Distributed Query Construction

Through a prototype implementation (Tian et al., this meeting) the VSO has already demonstrated the capability of unifying geographically distributed data sources following the Web Services paradigm and utilizing mechanisms such as the Simple Object Access Protocol (SOAP). So far, four participating sites (Stanford, Montana State University, National Solar Observatory and the Solar Data Analysis Center) permit Web-accessible, time-based searches that allow browse access to a number of diverse data sets. Our latest work includes the extension of the simple, time-based queries to include numerous other searchable observation parameters. For VSO users, this extended functionality enables more refined searches. For the VSO, it is a proof of concept that more complex, distributed queries can be effectively constructed and that results from heterogeneous, remote sources can be synthesized and presented to users as a single, virtual data product.

Gurman, J. B.↗

Earth Science Mining Web Services

To allow scientists further capabilities in the area of data mining and web services, the Goddard Earth Sciences Data and Information Services Center (GES DISC) and researchers at the University of Alabama in Huntsville (UAH) have developed a system to mine data at the source without the need of network transfers. The system has been constructed by linking together several pre-existing technologies: the Simple Scalable Script-based Science Processor for Measurements (S4PM), a processing engine at he GES DISC; the Algorithm Development and Mining (ADaM) system, a data mining toolkit from UAH that can be configured in a variety of ways to create customized mining processes; ActiveBPEL, a workflow execution engine based on BPEL (Business Process Execution Language); XBaya, a graphical workflow composer; and the EOS Clearinghouse (ECHO). XBaya is used to construct an analysis workflow at UAH using ADam components, which are also installed remotely at the GES DISC, wrapped as Web Services. The S4PM processing engine searches ECHO for data using space-time criteria, staging them to cache, allowing the ActiveBPEL engine to remotely orchestras the processing workflow within S4PM. As mining is completed, the output is placed in an FTP holding area for the end user. The goals are to give users control over the data they want to process, while mining data at the data source using the server's resources rather than transferring the full volume over the internet. These diverse technologies have been infused into a functioning, distributed system with only minor changes to the underlying technologies. The key to the infusion is the loosely coupled, Web-Services based architecture: All of the participating components are accessible (one way or another) through (Simple Object Access Protocol) SOAP-based Web Services.

Pham, Long↗

Work Coordination Engine

The Work Coordination Engine (WCE) is a Java application integrated into the Service Management Database (SMDB), which coordinates the dispatching and monitoring of a work order system. WCE de-queues work orders from SMDB and orchestrates the dispatching of work to a registered set of software worker applications distributed over a set of local, or remote, heterogeneous computing systems. WCE monitors the execution of work orders once dispatched, and accepts the results of the work order by storing to the SMDB persistent store. The software leverages the use of a relational database, Java Messaging System (JMS), and Web Services using Simple Object Access Protocol (SOAP) technologies to implement an efficient work-order dispatching mechanism capable of coordinating the work of multiple computer servers on various platforms working concurrently on different, or similar, types of data or algorithmic processing. Existing (legacy) applications can be wrapped with a proxy object so that no changes to the application are needed to make them available for integration into the work order system as "workers." WCE automatically reschedules work orders that fail to be executed by one server to a different server if available. From initiation to completion, the system manages the execution state of work orders and workers via a well-defined set of events, states, and actions. It allows for configurable work-order execution timeouts by work-order type. This innovation eliminates a current processing bottleneck by providing a highly scalable, distributed work-order system used to quickly generate products needed by the Deep Space Network (DSN) to support space flight operations. WCE is driven by asynchronous messages delivered via JMS indicating the availability of new work or workers. It runs completely unattended in support of the lights-out operations concept in the DSN.

Zendejas, Silvino↗

Quantitative Phenotypic Analysis of Arabidopsis Thaliana Grown in Microgravity Using Soap, an Applied Artificial Intelligence

Phenotypic analysis is an essential step in studying the gravitropic responses and gravitational stress experienced by plants grown in microgravity. Many of the phenotypic traits analyzed in gravitropism studies, such as root length, leaf area, secondary root count, and number of root hairs, currently rely upon manual measurement methods for quantification. However, new advances in data analysis technology using artificial intelligence offer an opportunity for more efficient phenotypic analysis and a reduction of time spent in the data collection phase. In this project, the ability of a new artificially intelligent data collection software, SOAP (Simple Object Access Protocol), to collect and quantify phenotypic traits of Arabidopsis thaliana will be assessed. This project will test the measurements taken by an initial draft of the software. SOAP will take measurements of shoot length, a key phenotype used to assess A. thaliana stress response when grown in microgravity conditions. Shoot length measurements made by SOAP will be compared against a series of manual shoot length measurements. The comparison between the two methods of data measurement will provide valuable insight into the relative accuracy of SOAP and the margin of human error when conducting lab measurements.

Arabidopsis↗

Software for Replicating Data Between X.500 and LDAP Directories

X500/LDAP Directory Replication Utility is a computer program for replicating information between X.500 and LDAP directories. [X.500 is an international standard for on-line directory services. LDAP (Lightweight Directory Access Protocol) is a simple directory access protocol.] The utility can be used to replicate an object of any type from X.500 to LDAP or from LDAP to X.500. The program uses the LDAP version 2 protocol, which is capable of working with both X.500 and LDAP directories. The program can provide any or all of the following services: (1) replicate only modified objects; (2) force replication of all objects; (3) replicate individual objects, one level of objects, or a subtree of objects; (4) filter sets of objects to select ones to be replicated; (5) remove and/or modify object classes from objects that are replicated; and (6) select and/or limit attributes that are replicated. The program includes a separate program that is used to remove objects that are no longer required to be replicated.

Wolfe, Thomas↗

Zero-Copy Objects System

Zero-Copy Objects System software enables application data to be encapsulated in layers of communication protocol without being copied. Indirect referencing enables application source data, either in memory or in a file, to be encapsulated in place within an unlimited number of protocol headers and/or trailers. Zero-copy objects (ZCOs) are abstract data access representations designed to minimize I/O (input/output) in the encapsulation of application source data within one or more layers of communication protocol structure. They are constructed within the heap space of a Simple Data Recorder (SDR) data store to which all participating layers of the stack must have access. Each ZCO contains general information enabling access to the core source data object (an item of application data), together with (a) a linked list of zero or more specific extents that reference portions of this source data object, and (b) linked lists of protocol header and trailer capsules. The concatenation of the headers (in ascending stack sequence), the source data object extents, and the trailers (in descending stack sequence) constitute the transmitted data object constructed from the ZCO. This scheme enables a source data object to be encapsulated in a succession of protocol layers without ever having to be copied from a buffer at one layer of the protocol stack to an encapsulating buffer at a lower layer of the stack. For large source data objects, the savings in copy time and reduction in memory consumption may be considerable.

Burleigh, Scott C.↗