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Results for “Singular value decomposition”

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At least 19 records

Denoising atomic resolution 4D scanning transmission electron microscopy data with tensor singular value decomposition

Tensor singular value decomposition (SVD) is a method to find a low-dimensional representation of data with meaningful structure in three or more dimensions. Here, tensor SVD has been applied to denoise atomic-resolution 4D scanning transmission electron microscopy (4D STEM) data. On data simulated from a SrTiO 3 [100] perfect crystal and a Si [110] edge dislocation, tensor SVD achieved an average peak signal-to-noise ratio (PSNR) of ~40 dB, which matches or exceeds the performance of other denoising methods, with processing times at least 100 times shorter. On experimental data from SrTiO 3 [100] and LiZnSb [11 2 ¯ 0]/GaSb [110] samples, tensor SVD denoises multiple GB 4D STEM data sets in ten minutes on a typical personal computer. Denoising with tensor SVD improves both convergent beam electron diffraction patterns and virtual-aperture annular dark field images.

36 MATERIALS SCIENCE↗

Analysis and compression of six-dimensional gyrokinetic datasets using higher order singular value decomposition

Higher order singular value decomposition (HOSVD) is explored as a tool for analyzing and compressing gyrokinetic data. An efficient numerical implementation of an HOSVD algorithm is described. HOSVD is used to analyze the full six-dimensional (three spatial, two velocity space, and time dimensions) gyrocenter distribution function from gyrokinetic simulations of ion temperature gradient, electron temperature gradient, and trapped electron mode driven turbulence. The HOSVD eigenvalues for the velocity space coordinates decay very rapidly, indicating that only a few structures in velocity space can capture the most important dynamics. In almost all of the cases studied, HOSVD extracts parallel velocity space structures which are very similar to orthogonal polynomials. HOSVD is also used to compress gyrokinetic datasets, an application in which it is shown to significantly outperform the more commonly used singular value decomposition. It is shown that the effectiveness of the HOSVD compression improves as the dimensionality of the dataset increases. (C) 2012 Elsevier Inc. All rights reserved.

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Data-driven acceleration of thermal radiation transfer calculations with the dynamic mode decomposition and a sequential singular value decomposition

In this work, we present a method for accelerating discrete ordinates radiative transfer calculations for radiative transfer. Our method works with nonlinear positivity fixes, in contrast to most acceleration schemes. The method is based on the dynamic mode decomposition (DMD) and using a sequence of rank-one updates to compute the singular value decomposition needed for DMD. Using a sequential method allows us to automatically determine the number of solution vectors to include in the DMD acceleration. We present results for slab geometry discrete ordinates calculations with the standard temperature linearization. Compared with positive source iteration, our results demonstrate that our acceleration method reduces the number of transport sweeps required to solve the problem by a factor of about 3 on a standard diffusive Marshak wave problem, a factor of several thousand on a cooling problem where the effective scattering ratio approaches unity, and a factor of 20 improvement in a realistic, multimaterial radiating shock problem.

97 MATHEMATICS AND COMPUTING↗

Randomized algorithms for generalized singular value decomposition with application to sensitivity analysis

The generalized singular value decomposition (GSVD) is a valuable tool that has many applications in computational science. However, computing the GSVD for large-scale problems is challenging. Motivated by applications in hyper-differential sensitivity analysis (HDSA), in this work we propose new randomized algorithms for computing the GSVD which use randomized subspace iteration and weighted QR factorization. Detailed error analysis is given which provides insight into the accuracy of the algorithms and the choice of the algorithmic parameters. We demonstrate the performance of our algorithms on test matrices and a large-scale model problem where HDSA is used to study subsurface flow.

97 MATHEMATICS AND COMPUTING↗

A Survey of Singular Value Decomposition Methods for Distributed Tall/Skinny Data

The Singular Value Decomposition (SVD) is one of the most important matrix factorizations, enjoying a wide variety of applications across numerous application domains. In statistics and data analysis, the common applications of SVD inclue Principal Components Analysis (PCA) and regression. Usually these applications arise on data that has far more rows than columns, so-called "tall/skinny" matrices. In the big data analytics context, this may take the form of hundreds of millions to billions of rows with only a few hundred columns. There is a need, therefore, for fast, accurate, and scalable tall/skinny SVD implementations which can fully utilize modern computing resources. To that end, we present a survey of three different algorithms for computing the SVD for these kinds of tall/skinny data layouts using MPI for communication. We contextualize these with common big data analytics techniques. Finally, we present both CPU and GPU timing results from the Summit supercomputer, and discuss possible alternative approaches.

Schmidt, Drew↗

Object detection with a multistatic array using singular value decomposition

A method and system for detecting the presence of subsurface objects within a medium is provided. In some embodiments, the detection system operates in a multistatic mode to collect radar return signals generated by an array of transceiver antenna pairs that is positioned across a surface and that travels down the surface. The detection system converts the return signals from a time domain to a frequency domain, resulting in frequency return signals. The detection system then performs a singular value decomposition for each frequency to identify singular values for each frequency. The detection system then detects the presence of a subsurface object based on a comparison of the identified singular values to expected singular values when no subsurface object is present.

47 OTHER INSTRUMENTATION↗

Synchrophasor Data Compression Under Disturbance Conditions via Cross-Entropy-Based Singular Value Decomposition

The increasing deployment of phasor measurement units and the advances of their reporting rates are challenging the present data centers in terms of storing and analyzing large-volume data. Under power system disturbance conditions, it is difficult to retain critical information while compressing the synchrophasor data effectively. This article combines the cross entropy and the singular value decomposition, proposing a novel model to compress the synchrophasor data to an extremely small size yet keep superior accuracy. The proposed model is extensively tested and compared with the state-of-the-art algorithms using the simulated and the FNET/GridEye field-collected data. The result indicates that the proposed algorithm has superior performance in compressing the data while retaining critical information under disturbance conditions.

42 ENGINEERING↗

Singular value decomposition of adjoint flux distributions for Monte Carlo variance reduction

Monte Carlo (MC) shielding calculations often use weight windows (WWs) and biased sources formed from a deterministic estimate of the adjoint flux to improve the convergence rate of tallies. This requires a significant amount of computer memory, which can limit the memory available for high-resolution tally output. A new method is proposed for reducing these memory requirements by using singular value decomposition (SVD) in linear or logarithmic space to approximate the adjoint flux. This method’s performance is evaluated using the Shift and Denovo codes for streaming and diffusion base case problems, followed by problems using the Westinghouse AP1000 and the Joint European Torus. The log SVD reduced WW memory requirements by an order of magnitude in all cases without a significant performance penalty. Additionally, the linear SVD reduced biased source memory requirements by an order of magnitude, but further investigation is needed to account for observed limitations.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Singular value decomposition and similarity renormalization group evolution of nuclear interactions

One of the main challenges for ab initio nuclear many-body theory is the growth of computational and storage costs as calculations are extended to heavy, exotic, and structurally complex nuclei. Here, we investigate the factorization of nuclear interactions as a means to address this issue. We perform Singular Value Decompositions of nucleon-nucleon interactions in partial wave representation and study the dependence of the singular value spectrum on interaction characteristics like regularization scheme and resolution scales. We develop and implement the Similarity Renormalization Group (SRG) evolution of the factorized interaction, and demonstrate that this SVD-SRG approach accurately preserves two-nucleon observables. We find that low-resolution interactions allow the truncation of the SVD at low rank, and that a small number of relevant components is sufficient to capture the nuclear interaction and perform an accurate SRG evolution, while the Coulomb interaction requires special consideration. The rank is uniform across all partial waves, and almost independent of the basis choice in the tested cases. This suggests an interpretation of the relevant singular components as mere representations of a small set of abstract operators that can describe the interaction and its SRG flow. Following the traditional workflow for nuclear interactions, we discuss how the transformation between the center-of-mass and laboratory frames creates redundant copies of the partial wave components when implemented in matrix representation, and we discuss strategies for mitigation. Lastly, we test the low-rank approximation to the SRG-evolved interactions in many-body calculations using the In-Medium SRG. By including nuclear radii in our analysis, we verify that the implementation of the SRG using the singular vectors of the interaction does not spoil the evolution of other observables.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Signal evaluations using singular value decomposition for Thomson scattering diagnostics

This paper provides a novel method for evaluating signal intensities in incoherent Thomson scattering diagnostics. A double-pass Thomson scattering system, where a laser passes through the plasma twice, generates two scattering pulses from the plasma. Evaluations of the signal intensities in the spectrometer are sometimes difficult due to noise and stray light. We apply the singular value decomposition method to Thomson scattering data with strong noise components. Results show that the average accuracy of the measured electron temperature (T{sub e}) is superior to that of temperature obtained using a low-pass filter (<20 MHz) or without any filters.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Assaying Used Nuclear Fuel Assemblies Using Lead Slowing-Down Spectroscopy and Singular Value Decomposition

This study investigates the use of a Lead Slowing-Down Spectrometer (LSDS) for the direct and independent measurement of fissile isotopes in light-water nuclear reactor fuel assemblies. The current study applies MCNPX, a Monte Carlo radiation transport code, to simulate the measurement of the assay of the used nuclear fuel assemblies in the LSDS. An empirical model has been developed based on the calibration of the LSDS to responses generated from the simulated assay of six well-characterized fuel assemblies. The effects of self-shielding are taken into account by using empirical basis vectors calculated from the singular value decomposition (SVD) of a matrix containing the self-shielding functions from the assay of assemblies in the calibration set. The performance of the empirical algorithm was tested on version 1 of the Next-Generation Safeguards Initiative (NGSI) used fuel library consisting of 64 assemblies, as well as a set of 27 diversion assemblies, both of which were developed by Los Alamos National Laboratory. The potential for direct and independent assay of the sum of the masses of Pu-239 and Pu-241 to within 2%, on average, has been demonstrated.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Quantum Solver Using Singular Value Decomposition for Computational Fluid Dynamics

Numerical solutions for fluid flow problems are challenging and have been focus of Computational Fluid Dynamics (CFD) research for past several decades. The advent of quantum computing promises exponential speedup in comparison to existing classical methods and alleviate computational constraints posed by CFD problems. Although solutions for most problems of interest in fluid dynamics using quantum computing are distant, recent advances in algorithms, software and hardware provide a path towards realizing this goal. Quantum linear solver algorithms (QLSA) such as Harrow–Hassidim–Lloyd (HHL) and Variational Quantum Linear Solver (VQLS) have been successfully implemented to solve for canonical problems such as Hele-Shaw flow. However, these algorithms still suffer to scale and address problems with ill-conditioned Jacobians. In the current paper, we alleviate these restrictions with a new quantum solver based on Singular Value Decomposition (SVD) and simulate flow past a 2D cylinder. The fidelity of the SVD based quantum solver in predicting the flow past 2D cylinder is computed along with an assessment of errors. Classical and quantum solutions for the flow are compared for different resolutions. Finally, we discuss variation in the solutions based on number of shots used.

Gottiparthi, Kalyan [ORNL] (ORCID:0000000213540255↗

Automatic Partition of Orbital Spaces Based on Singular Value Decomposition in the Context of Embedding Theories

Here, we present a simple approach for orbital space partitioning to be employed in the projection-based embedding theory developed by Goodpaster and co-workers [Manby et al. J. Chem. Theory Comput. 2012, 8, 2564]. Once the atoms are assigned to the desired subspaces, the molecular orbitals are projected onto the atomic orbitals centered on active atoms and then singular value decomposed. The right singular vectors are used to rotate the initial molecular orbitals, taking the largest gap in the singular values spectrum to define the most suitable partition of the occupied orbital space. This scheme is free from numerical parameters, contrary to the Mulliken charge threshold or the completeness criterion previously used. The performance of this new prescription is assessed in a test set of several distinct reactions, the deprotonation of decanoic acid, the Diels-Alder reaction of 1,3-butadiene and octadecanonaene, the torsional potential of a retinal derivative, and the critical points along the reaction coordinate of an instance of the Menshutkin S N2 reaction inside a carbon nanotube.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗