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DOE OSTI2025

Estimating soybean yields from high-temporal-resolution multi-source data using deep learning

Accurate and timely crop yield prediction is crucial for ensuring food security and maintaining stable agricultural markets. In recent years, there has been a surge in interest in leveraging high-temporal-resolution, multi-source data for effective crop growth monitoring and yield estimation. A notable challenge arises from the difficulty in capturing the intricate interactions between variables across different time steps within these high-temporal-resolution time series datasets. This complexity hinders the reliable extraction of yield information from voluminous and often noisy datasets, especially during periods of extreme weather events. Here, in this study, we propose an Attention and Graph Isomorphism Network-enhanced Bi-directional Long Short-Term Memory network (AGB-LSTM) for estimating county-level soybean yield in the United States. This model integrates a diverse set of remote sensing data, including Near-Infrared Reflectance of Vegetation (NIRv), Sun-Induced chlorophyll Fluorescence (SIF), and Gross Primary Productivity (GPP), along with environmental covariates. The AGB-LSTM effectively leverages information related to crop yield from high-temporal-resolution time series data (5-days), achieving an accuracy of R²= 0.67 and rRMSE = 14.46%. This approach significantly outperforms traditional machine learning methods such as Random Forest (RF) (R²= 0.52, rRMSE = 17.36%) and Bi-LSTM (R²= 0.58, rRMSE = 16.17%). Sensitivity experiments with different time steps and ranges demonstrated that our model could accurately and stably predict yields 1 to 2 months before harvest. Moreover, data with a finer temporal resolution consistently improved prediction performance, resulting in an approximately 20% increase in and an approximately 20% decrease in rRMSE compared to using monthly composites. We also evaluated the robustness of the model under extreme climate events and observed strong performance (R²= 0.50, rRMSE = 21.32%). Finally, yield mapping for major soybean-producing regions in North America in 2023 revealed spatial patterns that closely matched USDA yield reports. Our findings suggest that the AGB-LSTM model is a promising and effective method for estimating yield and has notable potential for global crop yield forecasting.

Deep learning↗

NASA NTRS2017

Intercomparison of Soil Moisture, Evaporative Stress, and Vegetation Indices for Estimating Corn and Soybean Yields Over the U.S.

This paper presents an intercomparative study of 12 operationally produced large-scale datasets describing soil moisture, evapotranspiration (ET), and or vegetation characteristics within agricultural regions of the contiguous United States (CONUS). These datasets have been developed using a variety of techniques, including, hydrologic modeling, satellite-based retrievals, data assimilation, and survey in-field data collection. The objectives are to assess the relative utility of each dataset for monitoring crop yield variability, to quantitatively assess their capacity for predicting end-of-season corn and soybean yields, and to examine the evolution of the yield-index correlations during the growing season. This analysis is unique both with regards to the number and variety of examined yield predictor datasets and the detailed assessment of the water availability timing on the end-of-season crop production during the growing season. Correlation results indicate that over CONUS, at state-level soil moisture and ET indices can provide better information for forecasting corn and soybean yields than vegetation-based indices such as normalized difference vegetation index. The strength of correlation with corn and soybean yields strongly depends on the interannual variability in yield measured at a given location. In this case study, some of the remotely derived datasets examined provide skill comparable to that of in situ field survey-based data further demonstrating the utility of these remote sensing-based approaches for estimating crop yield.

evapotranspiration↗

DOE OSTI2024

Non-linear relationships between daily temperature extremes and US agricultural yields uncovered by global gridded meteorological datasets

Global agricultural commodity markets are highly integrated among major producers. Prices are driven by aggregate supply rather than what happens in individual countries in isolation. Furthermore, estimating the effects of weather-induced shocks on production, trade patterns and prices hence requires a globally representative weather data set. Recently, two data sets that provide daily or hourly records, GMFD and ERA5-Land, became available. Starting with the US, a data rich region, we formally test whether these global data sets are as good as more fine-scaled country-specific data in explaining yields and whether they estimate similar response functions. While GMFD and ERA5-Land have lower predictive skill for US corn and soybeans yields than the fine-scaled PRISM data, they still correctly uncover the underlying non-linear temperature relationship. All specifications using daily temperature extremes under any of the weather data sets outperform models that use a quadratic in average temperature. Correctly capturing the effect of daily extremes has a larger effect than the choice of weather data. In a second step, focusing on Sub Saharan Africa, a data sparse region, we confirm that GMFD and ERA5-Land have superior predictive power to CRU, a global weather data set previously employed for modeling climate effects in the region.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2021

Argentina Food Security & Agriculture: Crop Monitoring and Forecasting for Argentina using NASA Satellite Observations

Early harvest information helps guide agricultural commodity assessments in Argentina, providing valuable planning information to identify potentially food-insecure regions, anticipate transportation and storage demands, predict price fluctuations, and project commodity trends. However, crop yield estimates are currently subjective, based on interviews with qualified informants (i.e., farmers, agribusiness actors). In partnership with the Buenos Aires Grain Exchange, we leveraged Terra Moderate Resolution Imaging Spectroradiometer (MODIS), Soil Moisture Active Passive (SMAP), and Integrated Multi-satellitE Retrievals for Global Precipitation Measurement (GPM IMERG) NASA Earth observations to develop a Google Earth Engine (GEE) toolset to monitor vegetation growth. The first component of the toolset produces spatial and temporal maps of temperature, precipitation, soil moisture, and the Normalized Difference Vegetation Index (NDVI), allowing users to visualize the influence of the region’s climate and weather. Next, we developed an autoregressive model to predict NDVI several months in advance. Lastly, we created a linear regression model of crop yield and NDVI for soybeans, corn, and wheat, and input the forecasted NDVI to generate a predicted crop yield output. The NDVI forecasting model produced accurate predictions at two, four, and six months when examining the most recent growing season. In the crop yield model, soybeans exhibited moderately strong correlation, wheat had consistent weak correlation, and corn varied from weak to strong correlation depending on zone. This information is vital for vegetation growth monitoring by identifying areas of high growth and allocating resources to areas of lower growth to efficiently maximize crop yields.

DEVELOP Tech Paper↗

NASA NTRS1982

Spectral estimates of intercepted solar radiation by corn and soybean canopies

Attention is given to the development of methods for combining spectral and meteorological data in crop yield models which are capable of providing accurate estimates of crop condition and yields throughout the growing season. The present investigation is concerned with initial tests of these concepts using spectral and agronomic data acquired in controlled experiments. The data were acquired at the Purdue University Agronomy Farm, 10 km northwest of West Lafayette, Indiana. Data were obtained throughout several growing seasons for corn and soybeans. Five methods or models for predicting yields were examined. On the basis of the obtained results, it is concluded that estimating intercepted solar radiation using spectral data is a viable approach for merging spectral and meteorological data in crop yield models.

Gallo, K. P.↗

NASA NTRS2020

Adaptation in U.S. Corn Belt Increases Resistance to Soil Carbon Loss With Climate Change

Increasing the amount of soil organic carbon (SOC) has agronomic benefits and the potential to mitigate climate change. Previous regional predictions of SOC trends under climate change often ignore or do not explicitly consider the effect of crop adaptation (i.e., changing planting dates and varieties). We used the DayCent biogeochemical model to examine the effect of adaptation on SOC for corn and soybean production in the U.S. Corn Belt using climate data from three models. Without adaptation, yields of both corn and soybean tended to decrease and the decomposition of SOC tended to increase leading to a loss of SOC with climate change compared to a baseline scenario with no climate change. With adaptation, the model predicted a substantially higher crop yield. The increase in yields and associated carbon input to the SOC pool counteracted the increased decomposition in the adaptation scenarios, leading to similar SOC stocks under different climate change scenarios. Consequently, we found that crop management adaptation to changing climatic conditions strengthen agroecosystem resistance to SOC loss. However, there are differences spatially in SOC trends. The northern part of the region is likely to gain SOC while the southern part of the region is predicted to lose SOC.

Soil Organic Carbon (SOC)↗

NASA NTRS1983

Comparison of CRD, APU, and state models for Iowa corn and soybeans and North Dakota barley and spring wheat

A comparison was made among the CEAS crop reporting district (CRD), agrophysical unit (APU), and state level multiple regression yield models for corn and soybeans in Iowa and barley and spring wheat in North Dakota. The best predictions were made by the state model for North Dakota spring wheat, by the APU models for barley, by the CRD models for Iowa soybeans, and by APU covariance models for Iowa corn. Because of this lack of consistency of model performance, CRD models would be recommended due to the availability of the data.

French, V.↗

NASA NTRSDate not supplied

The Added Value of SMAP Soil Moisture in Crop Yield Forecasting Over Argentina

Argentina is one of the major producers and exporter of soybeans, corn, and wheat to the world market; therefore, the accurate and timely forecasting of those crops yield is crucial to national crop management and global food security. Previous studies have mainly focused on developing forecasting models for a specific crop type and location using a single source of data (e.g., vegetation indices), thus providing little insight into the forecasting models' performance on different crop types and regions. Besides, these models are based on traditional statistical regression algorithms, while more advanced machine learning approaches have not been explored. This study investigated the estimation of crop yields of three major crops (corn, soybean, and winter wheat) using Multiple Linear Regression (MLR) and Support Vector Machine (SVM), over major growing provinces in Argentina. Our models were trained and evaluated on data from 2015 to 2020, where three remote sensing products (Normalized difference vegetation index (NDVI), SMAP soil moisture, and MODIS evapotranspiration) were used as predictors. Our results indicated that accurate crop yield forecasts using the developed regression models could be made one to two months before harvest. The MLR and SVM model performance varied among different crop types, where soybean and corn exhibited better predictability compare to the wheat. In most cases, the SVM outperformed the multiple linear regression model due to its ability to capture the nonlinear and complex features of the crop-production process. The forecasted model that combines data from multiple sources outperformed single-source satellite data. The highest accuracy was obtained when the three data sources were all considered in the model development. Results also indicated that the inclusion of SMAP soil moisture improved crop yield forecasting in most provinces, and the most significant improvements occurred in the drier region.

Nazmus Shams Sazib↗

NASA NTRS1983

Field measurements, simulation modeling and development of analysis for moisture stressed corn and soybeans, 1982 studies

The experimental design, data acquisition and analysis procedures for agronomic and reflectance data acquired over corn and soybeans at the Sandhills Agricultural Laboratory of the University of Nebraska are described. The following conclusions were reached: (1) predictive leaf area estimation models can be defined which appear valid over a wide range of soils; (2) relative grain yield estimates over moisture stressed corn were improved by combining reflectance and thermal data; (3) corn phenology estimates using the model of Badhwar and Henderson (1981) exhibited systematic bias but were reasonably accurate; (4) canopy reflectance can be modelled to within approximately 10% of measured values; and (5) soybean pubescence significantly affects canopy reflectance, energy balance and water use relationships.

Blad, B. L.↗

NASA NTRS2023

Heat Stress to Jeopardize Crop Production in the US Corn Belt Based on Downscaled CMIP5 Projections

CONTEXT Global food security faces increasing challenges from the changing climate. Changes of agricultural output from some of the most productive regions such as the US Corn Belt can largely affect the world's food market. Developing predictive understanding of the agricultural risk of climate change and potential mitigation strategies is critical for the global food security. OBJECTIVE The objective of this study is to assess the responses of maize and soybean yield to projected climate changes in the Corn Belt, identify the shifting environment stressors on crop yield, and tackle potential climate adaptation strategies. METHODS We drive a process-based model, the Decision Support System for Agrotechnology Transfer, with high-resolution statistically downscaled and bias-corrected historical and future climates from ten CMIP5 models in the MACA-2 database. RESULTS AND CONCLUSIONS The multi-model ensemble mean suggests a 12% decrease of maize yield by mid-century and 40% by late century, with a high degree of model consensus in the direction of changes; for individual models, the projected decrease of maize yield by late century ranges from <5% to over 80%, with the worst crop outcome corresponding to the most sensitive climate models. Soybean yield is projected to increase by midcentury with a high degree of model consensus, but such consensus is lost by late century as some projections shift to significant decreases. Crop yield in the Corn Belt is currently limited by water stress, but is projected to be increasingly limited by heat stress as well after the midcentury. The mounting heat stress will drive the most productive zone for maize to shift from central to northern part of the Corn Belt, but the projected increase in the northern states cannot fully compensate for the decrease in the south, causing the total production to decrease if agricultural practice stays the same. Earlier planting can alleviate only a small fraction of the heat-induced crop loss in a warmer climate. Climate change will (at least partially) offset the yield boost caused by agricultural technology and intensification. SIGNIFICANCE This study advances our predictive understanding of crop yield responses to climate change, and suggests that a multitude of strategies will be needed to address the climate change challenges for the U.S. agriculture.

Crop yield↗

DOE OSTI2025

Interactions Between Climate Mean and Variability Drive Future Agroecosystem Vulnerability

ABSTRACT Agriculture is crucial for global food supply and dominates the Earth's land surface. It is unknown, however, how slow but relentless changes in climate mean state, versus random extreme conditions arising from changing variability , will affect agroecosystems' carbon fluxes, energy fluxes, and crop production. We used an advanced weather generator to partition changes in mean climate state versus variability for both temperature and precipitation, producing forcing data to drive factorial‐design simulations of US Midwest agricultural regions in the Energy Exascale Earth System Model. We found that an increase in temperature mean lowers stored carbon, plant productivity, and crop yield, and tends to convert agroecosystems from a carbon sink to a source, as expected; it also can cause local to regional cooling in the earth system model through its effects on the Bowen Ratio. The combined effect of mean and variability changes on carbon fluxes and pools was nonlinear, that is, greater than each individual case. For instance, gross primary production reduces by 9%, 1%, and 13% due to change in mean temperature, change in temperature variability, and change in both temperature mean and variability, respectively. Overall, the scenario with change in both temperature and precipitation means leads to the largest reduction in carbon fluxes (−16% gross primary production), carbon pools (−35% vegetation carbon), and crop yields (−33% and −22% median reduction in yield for corn and soybean, respectively). By unambiguously parsing the effects of changing climate mean versus variability and quantifying their nonadditive impacts, this study lays a foundation for more robust understanding and prediction of agroecosystems' vulnerability to 21st‐century climate change.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2015

A Climate Generator for Agricultural Planning in Southeastern South America

A method is described for the generation of climate scenarios in a form suitable for driving agricultural models. The scenarios are tailored to the region in southeastern South America bounded by 25-40 deg S, 45-65 deg W, denoted here as SESA. SESA has been characterized by increasing summer precipitation, particularly during the late 20th century, which, in the context of favorable market conditions, has enabled increases in agricultural production. Since about year 2000, however, the upward tendency appears to have slowed or possibly stopped, raising questions about future climate inputs to regional agricultural yields. The method is not predictive in the deterministic sense, but rather attempts to characterize uncertainty in near-term future climate, taking into account both forced trends and unforced, natural climate fluctuations. It differs from typical downscaling methods in that GCM information is utilized only at the regional scale, subregional variability being modeled based on the observational record. Output, generated on the monthly time scale, is disaggregated to daily values with a weather generator and used to drive soybean yields in the crop model DSSAT-CSM, for which preliminary results are discussed. The simulations produced permit assessment of the interplay between long-range trends and near-term climate variability in terms of agricultural production.

climate simulation↗

NASA NTRS1987

Inferring spectral reflectances of plant elements by simple inversion of bidirectional reflectance measurements

Inverting previously developed explicit expressions for a vertical architecture, bidirectional reflectances measured over corn viewing from the solar quadrant at azimuths near the principal plane are used to determine the spectral reflectances of plant elements. The leaf reflectance values extracted in three visible bands at viewing zenith angles of 70 deg, 60 deg, and 45 deg agree closely with laboratory-measured reflectances of corn leaves. At viewing zenith angle of 30 deg, the inversion breaks down, inasmuch as the inferred plant element reflectances are too high. Satisfactory results are also achieved when the same approach is applied to bidirectional reflectances measured over potted balsam firs, but when applied to soybeans reflectances, the procedure yields unreasonably high leaf reflectances. The failure in this case is attributed to the nonvertical architecture of the soybean canopy; however, for this canopy, inversion based on horizontal architecture is possible. The bidirectional reflectances measured from the solar quadrant, at viewing angles appreciably far from 'hot spot' viewing, approximately equal in magnitude half of the leaf reflectance. The 0.5 ratio is predicted by a previous analysis of opaque horizontal Lambertian facets, as the asymptotic value for a dense canopy at any viewing angle. For soybeans, this ratio applies very closely at 15 deg viewing zenith angle. The results suggest that inversion based on simple architecture, applying explicit expressions, might be of value, either in itself or as a preliminary step before inversion applying complex models.

Otterman, J.↗

NASA NTRS2010

Salience Assignment for Multiple-Instance Data and Its Application to Crop Yield Prediction

An algorithm was developed to generate crop yield predictions from orbital remote sensing observations, by analyzing thousands of pixels per county and the associated historical crop yield data for those counties. The algorithm determines which pixels contain which crop. Since each known yield value is associated with thousands of individual pixels, this is a multiple instance learning problem. Because individual crop growth is related to the resulting yield, this relationship has been leveraged to identify pixels that are individually related to corn, wheat, cotton, and soybean yield. Those that have the strongest relationship to a given crop s yield values are most likely to contain fields with that crop. Remote sensing time series data (a new observation every 8 days) was examined for each pixel, which contains information for that pixel s growth curve, peak greenness, and other relevant features. An alternating-projection (AP) technique was used to first estimate the "salience" of each pixel, with respect to the given target (crop yield), and then those estimates were used to build a regression model that relates input data (remote sensing observations) to the target. This is achieved by constructing an exemplar for each crop in each county that is a weighted average of all the pixels within the county; the pixels are weighted according to the salience values. The new regression model estimate then informs the next estimate of the salience values. By iterating between these two steps, the algorithm converges to a stable estimate of both the salience of each pixel and the regression model. The salience values indicate which pixels are most relevant to each crop under consideration.

Wagstaff, Kiri L.↗

NASA NTRS2014

Impacts of El Nino Southern Oscillation on the Global Yields of Major Crops

The monitoring and prediction of climate-induced variations in crop yields, production and export prices in major food-producing regions have become important to enable national governments in import-dependent countries to ensure supplies of affordable food for consumers. Although the El Nino/Southern Oscillation (ENSO) often affects seasonal temperature and precipitation, and thus crop yields in many regions, the overall impacts of ENSO on global yields are uncertain. Here we present a global map of the impacts of ENSO on the yields of major crops and quantify its impacts on their global-mean yield anomalies. Results show that El Nino likely improves the global-mean soybean yield by 2.15.4 but appears to change the yields of maize, rice and wheat by -4.3 to +0.8. The global-mean yields of all four crops during La Nina years tend to be below normal (-4.5 to 0.0).Our findings highlight the importance of ENSO to global crop production.

Crops↗

NASA NTRS2024

On the Use of SMAP Soil Moisture for Forecasting NDVI Over CONUS Cropland Regions

Vegetation health forecasting (NDVI as a proxy) informs decision-makers about the end of season crop yield productivity but is not well-documented. This study tests improvements in vegetation health forecasting by developing a data-driven Dynamic Agricultural Productivity Indicator ( DAPI ), which simultaneously incorporates satellite-based root zone soil moisture (RZSM) and satellite-based NDVI data. RZSM is estimated via data assimilation of satellite based SMAP SM dataset. We employ the proposed DAPI forecast across four cropland types in CONUS, including corn, cotton, soybeans, and wheat. Results demonstrate superior performance of the DAPI forecasts compared to climatology-based NDVI forecasts, with the largest improvements in water-limited regions. DAPI shows particularly good performance during hydrologic disturbances such as floods and droughts. To this end, the DAPI approach is useful in estimating future vegetation health for identifying potential food-insecure areas, predicting crop price changes, and projecting expected commodities market trends.

Manh Le↗

NASA NTRS2017

Integrating Growth Stage Deficit Irrigation into a Process Based Crop Model

Current rates of agricultural water use are unsustainable in many regions, creating an urgent need to identify improved irrigation strategies for water limited areas. Crop models can be used to quantify plant water requirements, predict the impact of water shortages on yield, and calculate water productivity (WP) to link water availability and crop yields for economic analyses. Many simulations of crop growth and development, especially in regional and global assessments, rely on automatic irrigation algorithms to estimate irrigation dates and amounts. However, these algorithms are not well suited for water limited regions because they have simplistic irrigation rules, such as a single soil-moisture based threshold, and assume unlimited water. To address this constraint, a new modeling framework to simulate agricultural production in water limited areas was developed. The framework consists of a new automatic irrigation algorithm for the simulation of growth stage based deficit irrigation under limited seasonal water availability; and optimization of growth stage specific parameters. The new automatic irrigation algorithm was used to simulate maize and soybean in Gainesville, Florida, and first used to evaluate the sensitivity of maize and soybean simulations to irrigation at different growth stages and then to test the hypothesis that water productivity calculated using simplistic irrigation rules underestimates WP. In the first experiment, the effect of irrigating at specific growth stages on yield and irrigation water use efficiency (IWUE) in maize and soybean was evaluated. In the reproductive stages, IWUE tended to be higher than in the vegetative stages (e.g. IWUE was 18% higher than the well watered treatment when irrigating only during R3 in soybean), and when rainfall events were less frequent. In the second experiment, water productivity (WP) was significantly greater with optimized irrigation schedules compared to non-optimized irrigation schedules in water restricted scenarios. For example, the mean WP across 38 years of maize production was 1.1 kg/cu m for non-optimized irrigation schedules with 50 mm of seasonal available water and 2.1 kg/cu m optimized ion schedules, a 91% improvement in WP with optimized irrigation schedules. The framework described in this work could be used to estimate WP for regional to global assessments, as well as derive location specific irrigation guidance.

crop model↗

NASA NTRS2014

Estimation of Crop Gross Primary Production (GPP): I. Impact of MODIS Observation Footprint and Impact of Vegetation BRDF Characteristics

Accurate estimation of gross primary production (GPP) is essential for carbon cycle and climate change studies. Three AmeriFlux crop sites of maize and soybean were selected for this study. Two of the sites were irrigated and the other one was rainfed. The normalized difference vegetation index (NDVI), the enhanced vegetation index (EVI), the green band chlorophyll index (CIgreen), and the green band wide dynamic range vegetation index (WDRVIgreen) were computed from the moderate resolution imaging spectroradiometer (MODIS) surface reflectance data. We examined the impacts of the MODIS observation footprint and the vegetation bidirectional reflectance distribution function (BRDF) on crop daily GPP estimation with the four spectral vegetation indices (VIs - NDVI, EVI, WDRVIgreen and CIgreen) where GPP was predicted with two linear models, with and without offset: GPP = a × VI × PAR and GPP = a × VI × PAR + b. Model performance was evaluated with coefficient of determination (R2), root mean square error (RMSE), and coefficient of variation (CV). The MODIS data were filtered into four categories and four experiments were conducted to assess the impacts. The first experiment included all observations. The second experiment only included observations with view zenith angle (VZA) ≤ 35◦ to constrain growth of the footprint size,which achieved a better grid cell match with the agricultural fields. The third experiment included only forward scatter observations with VZA ≤ 35◦. The fourth experiment included only backscatter observations with VZA ≤ 35◦. Overall, the EVI yielded the most consistently strong relationships to daily GPP under all examined conditions. The model GPP = a × VI × PAR + b had better performance than the model GPP = a × VI × PAR, and the offset was significant for most cases. Better performance was obtained for the irrigated field than its counterpart rainfed field. Comparison of experiment 2 vs. experiment 1 was used to examine the observation footprint impact whereas comparison of experiment 4 vs. experiment 3 was used to examine the BRDF impact. Changes in R2, RMSE,CV and changes in model coefficients "a" and "b" (experiment 2 vs. experiment 1; and experiment 4 vs. experiment 3) were indicators of the impacts. The second experiment produced better performance than the first experiment, increasing R2 (↑0.13) and reducing RMSE (↓0.68 g C m−2 d−1) and CV (↓9%). For each VI, the slope of GPP = a × VI × PAR in the second experiment for each crop type changed little while the slope and intercept of GPP = a × VI × PAR + b varied field by field. The CIgreen was least affected by the MODIS observation footprint in estimating crop daily GPP (R2, ↑0.08; RMSE, ↓0.42 g C m−2 d−1; and CV, ↓7%). Footprint most affected the NDVI (R2, ↑0.15; CV, ↓10%) and the EVI (RMSE, ↓0.84 g C m−2 d−1). The vegetation BRDF impact also caused variation of model performance and change of model coefficients. Significantly different slopes were obtained for forward vs. backscatter observations, especially for the CIgreen and the NDVI. Both the footprint impact and the BRDF impact varied with crop types, irrigation options, model options and VI options.

Chlorophyll↗