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At least 19 records

Tethered from the Head and from the Tail: The Structure of Hydroxyl-Functionalized Ionic Liquids

Ionic liquids with special functionalities are synthesized with the specific purpose of creating new patterns of interaction in the condensed phase. This Letter discusses the case of alcohol-functionalized ILs, the so-called HFILs, which are part of the larger cohort of task-specific ionic liquids. We find that this small chemical modification can cause massive changes in the liquid landscape when the cationic tails are longer. For prototypical ionic liquids, larger alkyl tails act as separators of charge networks, but in the case of HFILs these become physical charge network linkers. The OH functionality adds a large repertoire of interactions and correlations that were mostly unavailable to traditional ILs.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH

Regional specialization in prefrontal cortex manifests in the reliability of task progression codes

The brain has the remarkable ability to guide the performance of complex tasks. Distinct prefrontal cortical areas make specific contributions to this ability, with the orbitofrontal cortex (OFC) critical for processing information related to trial outcomes and the dorsomedial prefrontal cortex (dmPFC) critical for sustained effort and selecting the right action at the right time. Yet, in both areas, neural activity represents both outcome- and action-related quantities. How similar neural representations support different functions remains unclear. Here, we compared OFC and dmPFC activity in rats performing a spatial alternation task. We show that, in contrast to other task-related variables, task progression is represented in both areas, but with distinct patterns of across-trial reliability that match each area’s previously documented functional specialization. Our results indicate that the engagement of reliable, task-phase-specific activity patterns differs across prefrontal regions in a manner well suited to engage different computations at different times.

Biological and medical sciences

Mapping Hsp104 interactions using cross‐linking mass spectrometry

Molecular machines from the AAA+ (ATPases Associated with diverse cellular Activity) superfamily of protein disaggregases play important roles in protein folding, disaggregation and DNA processing. Recent cryo-EM structures of AAA+ molecular machines have uncovered nuanced changes in their conformation that underlie their specialized functions. Structural knowledge of these molecular machines in complex with substrates begins to explain their mechanism of activity. Here, we explore how cross-linking mass spectrometry (XL-MS) can be used to interpret changes in conformation induced by ATP in Hsp104 and how a substrate may interact with Hsp104. We applied a panel of cross-linking reagents to produce cross-linking maps of Hsp104 and interpret our data on previously determined X-ray and cryo-EM structures of Hsp104 from a thermophilic yeast, Calcarisporiella thermophila. We developed an analysis pipeline to differentiate between intra-subunit and inter-subunit contacts within the hexameric homo-oligomer. We identify cross-links that break the asymmetry that is present in Hsp104 in an ATP-hydrolysis competent conformation but is absent in an ATP-hydrolysis-defective mutant. Finally, we identify contacts between Hsp104 and a selected protein (proprotein convertase subtilisin/kexin type 9 PCSK9) to reveal contacts on the central channel of Hsp104 across the length of this protein indicating that we might have trapped interactions consistent with its translocation. Our simple and robust XL-MS-based experiments and methods help interpret how these molecular machines change conformation and bind to other proteins even in the context of homo-oligomeric assemblies enabling coupling state-of-the-art modeling approaches with XL-MS.

60 APPLIED LIFE SCIENCES

Ladder symmetries and Love numbers of Reissner-Nordström black holes

It is well known that asymptotically flat black holes in general relativity have vanishing tidal Love numbers. In the case of Schwarzschild and Kerr black holes, this property has been shown to be a consequence of a hidden structure of ladder symmetries for the perturbations. In this work, we extend the ladder symmetries to non-rotating charged black holes in general relativity. As opposed to previous works in this context, we adopt a more general definition of Love numbers, including quadratic operators that mix gravitational and electromagnetic perturbations in the point-particle effective field theory. We show that the calculation of a subset of those couplings in full general relativity is affected by an ambiguity in the split between source and response, which we resolve through an analytic continuation. As a result, we derive a novel master equation that unifies scalar, electromagnetic and gravitational perturbations around Reissner-Nordström black holes. The equation is hypergeometric and can be obtained from previous formulations via nontrivial field redefinitions, which allow to systematically remove some of the singularities and make the presence of the ladder symmetries more manifest.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

Comparative transcriptomics of CAZy enzymes in white- and brown-rot agaricomycetes: Evolutionary insights into lignocellulose degradation and the relevance of GH16 glycoside hydrolase functional divergence

White-rot and brown-rot fungi (WRF and BRF, respectively) decompose lignocellulose, the main structural component of plant biomass, through distinct mechanisms. This study examines the transcriptomic responses of three WRF species (Pleurotus ostreatus, Phanerochaete chrysosporium, and Heterobasidion irregulare) and two BRF species (Fomitopsis schrenkii and Rhodonia placenta) grown on poplar wood (W) and glucose (G) as sole carbon sources. RNA-seq analysis revealed upregulation of carbohydrate-active enzymes (CAZymes) linked to lignocellulose degradation. WRF displayed a broader enzymatic repertoire, whereas BRF employed a more selective approach. Among these responses, GH16 glycoside hydrolases were consistently upregulated across all species, including BRF. Since GH16 enzymes are involved in both plant hemicellulose modification and cell wall remodeling, their wood-induced expression may reflect multiple processes rather than a single conserved wood-decay mechanism. Structural and phylogenetic analyses revealed species-specific divergence, consistent with potential functional specialization. These findings broaden our understanding of fungal enzymatic strategies and highlight GH16 enzymes as candidates for further study. Beyond the immediate context of wood decay, this work has broader implications for fungal ecology, evolutionary biology, and biotechnological applications such as biomass conversion and sustainable bioenergy.

Fungal ecological strategies

Plant-microbial interplay for organic nitrogen mediated by functional specificity of root compartments

The organic form of nitrogen (N) is a critical intermediate in mutualistic and competitive root-microbial interactions, mediated by extracellular enzymes. Visualization of the hotspots of organic N and proteolytic activity might be valuable for revealing root functional specificity in N acquisition and transformation at the level of individual roots and compartments. For the first time, we used time-lapse amino-mapping and zymography to co-localize and map the spatial distribution of amino-N and leucine aminopeptidase (LAP) activity in the soil and different root parts of maize (Zea mays L.). Amino-N distribution was mainly associated with seminal roots and root tips, where it overlapped with LAP activity hotspots. In the lateral roots and bulk soil, however, LAP activity was decoupled from amino-N. Distinct functional traits revealed themselves as the highest amino-N content and LAP activity in seminal root tips and as the largest relative extent of the rhizosphere in lateral root tips. Co-localized amino-N and LAP activities highlighted different nutrient acquisition strategies mediated by root-microbe interactions, depending on the root compartment. Seminal roots and their tips appeared to adopt mutualistic strategies, potentially attracting root-associated microorganisms through releasing oligo- and polypeptides. In contrast, lateral roots, with amino-N detected only at their tips, demonstrated stronger N competition, relying on the enzyme activity of the rhizosphere microbial community for N acquisition. These insights emphasized the role of root functional specialization in shaping plant-microbe interactions, offering pathways to enhance nutrient use efficiency.

Maize (Zea mays L.)

The 1 → 3 massive splitting functions from QCD factorization and SCET

Splitting functions are universal functions describing the collinear dynamics of gauge theories, and as such are crucial ingredients for a wide variety of calculations in perturbative QCD. We present analytic results for the triple collinear splitting functions in QCD with a single massive parton. We derive the splitting functions using two distinct methods; first by expanding the squared matrix elements in the collinear limit, and secondly by using soft-collinear effective theory with massive quarks. We find agreement between these two approaches, providing a strong check of our results. Additionally, we also check all iterated and soft limits of our results, finding agreement with predictions from factorization. Our results provide an important ingredient for higher order perturbative calculations involving massive partons, and for the description of the collinear dynamics of heavy flavor jets.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

Emergence of the polydeterminant in QCD

A generalization of the determinant appears in particle physics in effective Lagrangian interaction terms that model the chiral anomaly in quantum chromodynamics (Giacosa et al. in Phys Rev D 97(9):091901, 2018, Phys Rev D 109(7):L071502, 2024), in particular in connection to mesons. This polydeterminant function, known in the mathematical literature as a mixed discriminant, associates N distinct N x N complex matrices into a complex number and reduces to the usual determinant when all matrices are taken as equal. Here, we explore the main properties of the polydeterminant applied to (quantum) fields by using a formalism and a language close to high-energy physics approaches. We discuss its use as a tool to write down novel chiral anomalous Lagrangian terms and present an explicit illustrative model for mesons. Finally, the extension of the polydeterminant as a function of tensors is shown.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS

p -adic reconstruction of rational functions in multiloop amplitudes

Numerical reconstruction techniques are widely employed in the calculation of multiloop scattering amplitudes. In recent years, it has been observed that the rational functions in multiloop calculations greatly simplify under partial fractioning. In this article, we present a technique to reconstruct rational functions directly in partial-fractioned form, by evaluating the functions at special integer points chosen for their properties under a p -adic metric. As an application, we apply this technique to reconstruct the largest rational function in the integration-by-parts reduction of one of the rank-5 integrals appearing in two-loop five-point full-color massless amplitude calculations in quantum chromodynamics. The number of required numerical probes (per prime field) is found to be around 25 times smaller than in conventional techniques, and the obtained result is 130 times smaller. The reconstructed result displays signs of additional structure that could be used to further reduce its size and the number of required probes. Published by the American Physical Society 2024

Astronomy & Astrophysics

Green’s Function Perspective on the Nonlinear Density Response of Quantum Many-Body Systems

We derive equations of motion for higher order density response functions using the theory of thermodynamic Green’s functions. We also derive expressions for the higher order generalized dielectric functions and polarization functions. Moreover, we relate higher order response functions and higher order collision integrals within the Martin–Schwinger hierarchy. We expect our results to be highly relevant to the study of a variety of quantum many-body systems such as matter under extreme temperatures, densities, and pressures.

Density Functional Theory

Universal mass equation for equal-quantum excited-states sets I

The masses of fifteen baryon sets and twenty-four meson sets of three or more equal-quantum excited states, using Breit-Wigner PDG masses and their uncertainties at fixed J P for baryons and J PC for mesons, are fitted by a simple two-parameter logarithmic function, M n = αLn(n)+β, where n is the level of radial excitation. The conjecture is made that accurately measured masses of all equal-quantum baryons (including LHCb exotic P$_{c\bar{c}}^+$s) and meson excited states (including s$\bar{s}$, s$\bar{c}$, c$\bar{c}$, c$\bar{b}$, and b$\bar{b}$ states) are related by the logarithmic function used here; at least for the mass range of currently known excited states. The baryon “star” rating case is evaluated. The Cornell potential is an example of how a logarithmic behavior can be explained by an appropriate potential. Thus, a “universal mass equation” (UME) for equal-quantum excited-state sets is presented.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC

Investigating the universality of five-point QCD scattering amplitudes at high energy

We investigate 2 → 3 QCD scattering amplitudes in multi-Regge kinematics, i.e. where the final partons are strongly ordered in rapidity. In this regime amplitudes exhibit intriguing factorisation properties which can be understood in terms of effective degrees of freedom called reggeons. Working within the Balitsky/JIMWLK framework, we predict these amplitudes for the first time to next-to-next-to-leading logarithmic order, and compare against the limit of QCD scattering amplitudes in full colour and kinematics. We find that the latter can be described in terms of universal objects, and that the apparent non-universality arising at NNLL comes from well-defined and under-control contributions that we can predict. Thanks to this observation, we extract for the first time the universal vertex that controls the emission of the central-rapidity gluon, both in QCD and $\mathcal{N}$ = 4 super Yang-Mills.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

Recurrent features of amplitudes in planar $\mathcal{N}$ = 4 super Yang-Mills theory

The planar three-gluon form factor for the chiral stress tensor operator in planar maximally supersymmetric Yang-Mills theory is an analog of the Higgs-to-three-gluon scattering amplitude in QCD. The amplitude (symbol) bootstrap program has provided a wealth of high-loop perturbative data about this form factor, with results up to eight loops available. The symbol of the form factor at L loops is given by words of length 2L in six letters with associated integer coefficients. In this paper, we analyze this data, describing patterns of zero coefficients and relations between coefficients. We find many sequences of words whose coefficients are given by closed-form expressions which we expect to be valid at any loop order. Moreover, motivated by our previous machine-learning analysis, we identify simple recursion relations that relate the coefficient of a word to the coefficients of particular lower-loop words. These results open an exciting door for understanding scattering amplitudes at all loop orders.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

A new framework for higher loop Witten diagrams

The differential representation is a novel formalism for studying boundary correlators in (d + 1)-dimensional anti-de Sitter space. In this letter, we generalize the differential representation beyond tree level using the notion of operator-valued integrals. We use the differential representation to compute three-point bubble and triangle Witten diagrams with external states of conformal dimension ∆ = d. We compare the former to a position space computation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

On amplitudes and field redefinitions

We derive an off-shell recursion relation for correlators that holds at all loop orders. This allows us to prove how generalized amplitudes transform under generic field redefinitions, starting from an assumed behavior of the one-particle-irreducible effective action. The form of the recursion relation resembles the operation of raising the rank of a tensor by acting with a covariant derivative. This inspires a geometric interpretation, whose features and flaws we investigate.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

Celestial leaf amplitudes

Celestial amplitudes may be decomposed as weighted integrals of AdS 3 -Witten diagrams associated to each leaf of a hyperbolic foliation of spacetime. We show, for the Kleinian three-point MHV amplitude, that each leaf subamplitude is smooth except for the expected light-cone singularities. Moreover, we find that the full translationally-invariant celestial amplitude is simply the residue of the pole in the leaf amplitude at the point where the total conformal weights of the gluons equals three. This full celestial amplitude vanishes up to light-cone contact terms, as required by spacetime translation invariance, and reduces to the expression previously derived by Mellin transformation of the Parke-Taylor formula.

79 ASTRONOMY AND ASTROPHYSICS

Hyperbolic vacua in Minkowski space

Families of Lorentz, but not Poincare, invariant vacua are constructed for a massless scalar field in 4D Minkowski space. These are generalizations of the Rindler vacuum with a larger symmetry group. Explicit expressions are given as squeezed excitations of the Poincare vacuum. The effective reduced vacua on the 3D hyperbolic de Sitter slices are the well-known de Sitter α-vacua with antipodal singularities in the Wightman function. Several special interesting cases are discussed.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC

Simultaneous energy and mass calibration of large-radius jets with the ATLAS detector using a deep neural network

The energy and mass measurements of jets are crucial tasks for the Large Hadron Collider experiments. This paper presents a new calibration method to simultaneously calibrate these quantities for large-radius jets measured with the ATLAS detector using a deep neural network (DNN). To address the specificities of the calibration problem, special loss functions and training procedures are employed, and a complex network architecture, which includes feature annotation and residual connection layers, is used. The DNN-based calibration is compared to the standard numerical approach in an extensive series of tests. The DNN approach is found to perform significantly better in almost all of the tests and over most of the relevant kinematic phase space. In particular, it consistently improves the energy and mass resolutions, with a 30% better energy resolution obtained for transverse momenta $p$ T > $500$ GeV.

47 OTHER INSTRUMENTATION