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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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9 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Alternative splicing: transcriptional regulatory network in agroforestry

Alternative splicing (AS) in plants plays a key role in regulating the expression of numerous transcripts from a single gene in a regulatory pathway. Variable concentrations of growth regulatory hormones and external stimuli trigger alternative splicing to switch among different growth stages and adapt to environmental stresses. In the AS phenomenon, a spliceosome causes differential transcriptional modifications in messenger RNA (mRNAs), resulting in partial or complete retention of one or more introns as compared to fully spliced mRNA. Differentially expressed proteins translated from intron-retaining messenger RNA (mRNA ir ) perform vital functions in the feedback mechanism. At the post-transcriptional level, AS causes the remodeling of transcription factors (TFs) by the addition or deletion of binding domains to activate and/or repress transcription. In this study, we have summarized the specific role of AS in the regulation of gene expression through repression and activation of the transcriptional regulatory network under external stimuli and switch among developmental stages.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Tropical Tree Crop Simulation with a Process-Based, Daily Timestep Simulation Model (ALMANAC): Description of Model Adaptation and Examples with Coffee and Cocoa Simulations

Coffee (Coffea species) and Cocoa (Theobroma cacao) are important cash crops grown in the tropics but traded globally. This study was conducted to apply the ALMANAC model to these crops for the first time, and to test its ability to simulate them under agroforestry management schemes and varying precipitation amounts. To create this simulation, coffee was grown on a site in Kaua’i, Hawai’i, USA, and cocoa was grown on a site in Sefwi Bekwai, Ghana. A stand-in for a tropical overstory tree was created for agroforestry simulations using altered parameters for carob, a common taller tropical tree for these regions. For both crops, ALMANAC was able to realistically simulate yields when compared to the collected total yield data. On Kaua’i, the mean simulated yield was 2% different from the mean measured yield, and in all three years, the simulated values were within 10% of the measured values. For cocoa, the mean simulated yield was 3% different from the mean measured yield and the simulated yield was within 10% of measured yields for all four available years. When precipitation patterns were altered, in Ghana, the wetter site showed lower percent changes in yield than the drier site in Hawai’i. When agroforestry-style management was simulated, a low Leaf Area Index (LAI) of the overstory showed positive or no effect on yields, but when LAI climbed too high, the simulation was able to show the detrimental effect this competition had on crop yields. These simulation results are supported by other literature documenting the effects of agroforestry on tropical crops. This research has applied ALMANAC to new crops and demonstrated its simulation of different management and environmental conditions. The results show promise for ALMANAC’s applicability to these scenarios as well as its potential to be further tested and utilized in new circumstances.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

A review of transformative strategies for climate mitigation by grasslands

Grasslands can significantly contribute to climate mitigation. However, recent trends indicate that human activities have switched their net cooling effect to a warming effect due to management intensification and land conversion. This indicates an urgent need for strategies directed to mitigate climate warming while enhancing productivity and efficiency in the use of land and natural (nutrients, water) resources. Here, in this work, we examine the potential of four innovative strategies to slow climate change including: 1) Adaptive multi-paddock grazing that consists of mimicking how ancestral herds roamed the Earth; 2) Agrivoltaics that consists of simultaneously producing food and energy from solar panels on the same land area; 3) Agroforestry with a reverse phenology tree species, Faidherbia (Acacia) albida, that has the unique trait of being photosynthetically active when intercropped herbaceous plants are dormant; and, 4) Enhanced Weathering, a negative emission technology that removes atmospheric CO 2 from the atmosphere. Further, we speculate about potential unknown consequences of these different management strategies and identify gaps in knowledge. We find that all these strategies could promote at least some of the following benefits of grasslands: CO 2 sequestration, non-CO 2 GHG mitigation, productivity, resilience to climate change, and an efficient use of natural resources. However, there are obstacles to be overcome. Mechanistic assessment of the ecological, environmental, and socio-economic consequences of adopting these strategies at large scale are urgently needed to fully assess the potential of grasslands to provide food, energy and environmental security.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Conservation management decreases surface runoff and soil erosion

Conservation management practices – including agroforestry, cover cropping, no-till, reduced tillage, and residue return – have been applied for decades to control surface runoff and soil erosion, yet results have not been integrated and evaluated across cropping systems. In this study we collected data comparing agricultural production with and without conservation management strategies. We used a bootstrap resampling analysis to explore interactions between practice type, soil texture, surface runoff, and soil erosion. We then used a correlation analysis to relate changes in surface runoff and soil erosion to 13 other soil health and agronomic indicators, including soil organic carbon, soil aggregation, infiltration, porosity, subsurface leaching, and cash crop yield. Across all conservation management practices, surface runoff and erosion had respective mean decreases of 67% and 80% compared with controls. Use of cover cropping provided the largest decreases in erosion and surface runoff, thus emphasizing the importance of maintaining continuous vegetative cover on soils. Coarse- and medium-textured soils had greater decreases in both erosion and runoff than fine-textured soils. Changes in surface runoff and soil erosion under conservation management were highly correlated with soil organic carbon, aggregation, porosity, infiltration, leaching, and yield, showing that conservation practices help drive important interactions between these different facets of soil health. This study offers the first large-scale comparison of how different conservation agriculture practices reduce surface runoff and soil erosion, and at the same time provides new insight into how these interactions influence the improvement or loss of soil health.

58 GEOSCIENCES↗
DOE OSTI2023

CRISPR/Cas9-based gene activation and base editing in Populus

The genus Populus has long been used for environmental, agroforestry and industrial applications worldwide. Today Populus is also recognized as a desirable crop for biofuel production and a model tree for physiological and ecological research. As such, various modern biotechnologies, including CRISPR/Cas9-based techniques, have been actively applied to Populus for genetic and genomic improvements for traits such as increased growth rate and tailored lignin composition. However, CRISPR/Cas9 has been primarily used as the active Cas9 form to create knockouts in the hybrid poplar clone “717-1B4” (P. tremula x P. alba clone INRA 717-1B4). Alternative CRISPR/Cas9-based technologies, e.g. those involving modified Cas9 for gene activation and base editing, have not been evaluated in most Populus species for their efficacy. Here we employed a deactivated Cas9 (dCas9)-based CRISPR activation (CRISPRa) technique to fine-tune the expression of two target genes, TPX2 and LecRLK-G which play important roles in plant growth and defense response, in hybrid poplar clone “717-1B4” and poplar clone “WV94” (P. deltoides “WV94”), respectively. We observed that CRISPRa resulted in 1.2-fold to 7.0-fold increase in target gene expression through transient expression in protoplasts and Agrobacterium-mediated stable transformation, demonstrating the effectiveness of dCas9-based CRISPRa system in Populus. In addition, we applied Cas9 nickase (nCas9)-based cytosine base editor (CBE) to precisely introduce premature stop codons via C-to-T conversion, with an efficiency of 13%–14%, in the target gene PLATZ which encodes a transcription factor involved in plant fungal pathogen response in hybrid poplar clone “717-1B4”. Overall, we showcase the successful application of CRISPR/Cas-based technologies in gene expression regulation and precise gene engineering in two Populus species, facilitating the adoption of emerging genome editing tools in woody species.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Plant-microbe interactions: from genes to ecosystems using Populus as a model system

Plant-microbe symbioses span a continuum from pathogenic to mutualistic with functional consequences for both organisms in the symbiosis. In order to increase sustainable food and fuel production in the future, it is imperative that we harness these symbioses. The tree genus Populus is an excellent model system for studies examining plant-microbe interactions due to the wealth of genomic information available and the molecular tools that have been developed to manipulate Populus-microbe symbioses. In this review, we highlight how Populus can serve as a model system to explore plant-microbe interactions. Specifically, highlighting research linking Populus-microbe interactions from the gene to the ecosystem level. We explore why Populus is an excellent model for perennial plant systems, the molecular underpinnings of Populus-microbe interactions, how host genetics influence microbial community composition, and how microbial communities vary at fine spatial scales and between Populus species. Further, we explore how the patterns of the microbiome may affect ecosystem level functions in managed and natural ecosystems. Understanding and manipulating these interactions in Populus has the potential to improve plant health and impact ecosystem sustainability and processes as Populus trees function as foundational species in many natural ecosystems and are also deployed in managed ecosystems for various agroforestry applications.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

The impact of interventions in the global land and agri-food sectors on Nature’s Contributions to People and the UN Sustainable Development Goals

Interlocked challenges of climate change, biodiversity loss and land degradation require transformative interventions in the land management and food production sectors to reduce carbon emissions, strengthen adaptive capacity, and maintain or increase food production to 2050. However, deciding which interventions to pursue and understanding their relative synergies with and trade-offs against different social and environmental goals has been difficult without direct comparisons across a range of possible actions. This study examined a series of 40 different options, implemented through land, value chain or risk management, for their relative impacts across 18 Nature’s Contributions to People (also known as ecosystem services) and the 17 Sustainable Development Goals. We find that a relatively small number of interventions show significant positive synergies with both SDGs and NCPs; these include improved cropland management, improved grazing land management, improved livestock management, agroforestry, agricultural diversification, increased soil organic carbon content, reduced soil erosion, salinization and compaction, fire management, reduced landslides and hazards, reduced pollution, management of invasive species, sustainable source, and reduced post-harvest losses. Several interventions show strong negative impacts on either SDGs, NCPs or in some cases, both; these include bioenergy and BECCS, afforestation, and some risk sharing measures, like commercial crop insurance. Our results demonstrate that a better understanding of benefits and trade-offs of comparative policy approaches can help decision-makers choose the most effective, or at the very minimum, benign interventions for implementation in specific contexts.

Mcelwee, Pam↗
DOE OSTI2024

Pathways for Agricultural Decarbonization in the United States

In the United States, agricultural production is both a significant source of greenhouse gases (GHGs) (Environmental Protection Agency (EPA), 2022) and uniquely susceptible to climate change impacts (Vermeulen et al., 2012). Decarbonization solutions have been proposed for addressing agricultural GHGs; however, research has been limited in synthesizing qualitative and quantitative analysis of potential GHG mitigation solutions in the United States. In this report, we review U.S. agricultural GHG sources by activity and quantify potential mitigation solutions based on a comprehensive data and literature analysis. We also discuss agricultural carbon sequestration options to offset GHG emissions. In our analysis, we identified two significant and hard-to-abate GHG sources (N 2 O from soil management, and CH 4 from enteric fermentation from livestock) as well as high-impact GHG mitigation solutions (e.g. agroforestry, reforestation, and biochar application) and cross-cutting GHG mitigation solutions (renewable energy production, precision agriculture, no-till, integrated nutrient management, and biochar). This report is meant to provide initial analysis and establish a foundation for future agricultural decarbonization research - it is not an exhaustive analysis of all available studies. However, to our knowledge this report is the most comprehensive assessment of agricultural GHG emissions and associated mitigation opportunities in the United States to date. Future empirical research is recommended to close research gaps in different climates, soils, and agricultural systems. Meta-analyses for all mitigation solutions would increase confidence in the estimated GHG mitigation potentials. To conclude this report, we discuss short-term and long-term pathways for agricultural decarbonization in the United States, the importance of accounting for total GHG fluxes, potential co-benefits of agricultural decarbonization, analysis of study data confidence, and research gaps.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2024

JISEA-CSU Sustainable Agriculture Workshop [Slides]

The JISEA-CSU Sustainable Agriculture Workshop was co-hosted by the National Renewable Energy Laboratory's Joint Institute for Strategic Energy Analysis Sustainable Agriculture Catalyzer and the Colorado State University Ag Innovation Center, and sponsored by the Colorado-Wyoming Climate Resilience Engine. The workshop brought together researchers, agricultural producers, technology innovators, investors, and policymakers to examine the past, present, and future of the U.S. agriculture and energy strategy. The workshop will feature presentations, panels, and interactive activities that dive into the successes and challenges of the industry to help inform the direction of future research efforts.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗