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At least 19 records

PyAMG: Algebraic Multigrid Solvers in Python

PyAMG is a Python package of algebraic multigrid (AMG) solvers and supporting tools for approximating the solution to large, sparse linear systems of algebraic equations, Ax = b, where A is an n × n sparse matrix. Sparse linear systems arise in a range of problems in science, from fluid flows to solid mechanics to data analysis. While the direct solvers available in SciPy’s sparse linear algebra package (scipy.sparse.linalg) are highly efficient, in many cases iterative methods are preferred due to overall complexity. However, the iterative methods in SciPy, such as CG and GMRES, often require an efficient preconditioner in order to achieve a lower complexity. Preconditioning is a powerful tool whereby the conditioning of the linear system and convergence rate of the iterative method are both dramatically improved. PyAMG constructs multigrid solvers for use as a preconditioner in this setting. A summary of multigrid and algebraic multigrid solvers can be found in Olson (2015a), in Olson (2015b), and in Falgout (2006); a detailed description can be found in Briggs et al. (2000) and Trottenberg et al. (2001).

97 MATHEMATICS AND COMPUTING↗

Final Report: Subcontract B623868 Algebraic Multigrid solvers for coupled PDE systems

The Pennsylvania State University (“Subcontractor”) continued to work on the design of algebraic multigrid solvers for coupled systems of partial differential equations (PDEs) arising in numerical modeling of various applications, with a main focus on solving the Dirac equation arising in Quantum Chromodynamics (QCD). The goal of the proposed work was to develop combined geometric and algebraic multilevel solvers that are robust and lend themselves to efficient implementation on massively parallel heterogeneous computers for these QCD systems. The research in these areas built on previous works, focusing on the following three topics: (1) the development of parallel full-multigrid (PFMG) and non-Galerkin coarsening techniques in this frame work for solving the Wilson Dirac system; (2) the use of these same Wilson MG solvers for preconditioning the Overlap and Domain Wall formulations of the Dirac equation; and (3) the design and analysis of algebraic coarsening algorithms for coupled PDE systems including Stokes equation, Maxwell equation and linear elasticity.

97 MATHEMATICS AND COMPUTING↗

A Fast Algebraic Multigrid Solver and Accurate Discretization for Highly Anisotropic Heat Flux I: Open Field Lines

We present a novel solver technique for the anisotropic heat flux equation, aimed at the high level of anisotropy seen in magnetic confinement fusion plasmas. Such problems pose two major challenges: (i) discretization accuracy and (ii) efficient implicit linear solvers. We simultaneously address each of these challenges by constructing a new finite element discretization with excellent accuracy properties, tailored to a novel solver approach based on algebraic multigrid (AMG) methods designed for advective operators. We pose the problem in a mixed formulation, introducing the directional temperature gradient as an auxiliary variable. The temperature and auxiliary fields are discretized in a scalar discontinuous Galerkin space with upwinding principles used for discretizations of advection. We demonstrate the proposed discretization’s superior accuracy over other discretizations of anisotropic heat flux, achieving error 1000x smaller for anisotropy ratio of 10 9 , for closed field lines. The block matrix system is reordered and solved in an approach where the two advection operators are inverted using AMG solvers based on approximate ideal restriction, which is particularly efficient for upwind discontinuous Galerkin discretizations of advection. To ensure that the advection operators are nonsingular, in this paper we restrict ourselves to considering open (acyclic) magnetic field lines for the linear solvers. We demonstrate fast convergence of the proposed iterative solver in highly anisotropic regimes where other diffusion-based AMG methods fail.

97 MATHEMATICS AND COMPUTING↗

Algebraic Multigrid Solvers for Coupled PDE Systems (Final Report – B619169)

The Pennsylvania State University (“Subcontractor”) worked on the design of multigrid solvers for coupled systems of partial differential equations arising in numerical modeling of various applications, with a main emphasis on the design of new optimal algebraic multigrid interpolation. Generally, the aim of this work was to develop geometric and algebraic multilevel solvers that are robust and lend themselves to efficient implementation on massively parallel heterogeneous computers. The research in these areas built on previous works, focusing on the following topics: (1) design and analysis of algebraic coarsening algorithms for coupled PDE systems including Stokes equation, Maxwell equation and linear elasticity; (2) development of non-Galerkin coarsening techniques for the Wilson Dirac system; and (3) the use of this same Wilson MG solver for preconditioning the Overlap and Domain Wall formulations of the Dirac equation.

97 MATHEMATICS AND COMPUTING↗

An Algebraic Multigrid Solver for Navier-Stokes Problems in the Discrete Second-Order Approximation

An algebraic multigrid scheme is presented for solving the discrete Navier-Stokes equations to second-order accuracy using the defect-correction method. Solutions have been obtained for problems involving both structured and unstructured meshes, with the resolution and resolution grading controlled by global and local mesh refinements. The solver is efficient and robust to the extent that no underrelaxation of variables has been required to ensure convergence, but rates of convergence can be improved with small amounts of underrelaxation of the velocity-pressure coupling. Provided that the computational mesh can resolve the flow field, convergence characteristics are almost mesh independent. Rates of convergence actually improve with refinement, asymptotically approaching mesh independent values. For extremely coarse meshes where dispersive truncation errors would be expected to prevent convergence (or even induce divergence), solutions can still be obtained by using explicit underrelaxation in the iterative cycle.

Webster, R.↗

Comparative Performance Analysis of Coarse Solvers for Algebraic Multigrid on Multicore and Manycore Architectures

In this paper, we study the performance of a two-level algebraic-multigrid algorithm, with a focus on the impact of the coarse-grid solver on performance. We consider two algorithms for solving the coarse-space systems: the preconditioned conjugate gradient method and a new robust HSS-embedded low-rank sparse-factorization algorithm. Our test data comes from the SPE Comparative Solution Project for oil-reservoir simulations. We contrast the performance of our code on one 12-core socket of a Cray XC30 machine with performance on a 60-core Intel Xeon Phi coprocessor. To obtain top performance, we optimized the code to take full advantage of fine-grained parallelism and made it thread-friendly for high thread count. We also developed a bounds-and-bottlenecks performance model of the solver which we used to guide us through the optimization effort, and also carried out performance tuning in the solver’s large parameter space. Finally, as a result, significant speedups were obtained on both machines.

97 MATHEMATICS AND COMPUTING↗

A Semi-Algebraic Two Level Solver

We develop a simple semi-algebraic 2-level solver built on traditional multigrid ideas. It is designed to be easily incorporated into existing simulation software. It exhibits good convergence for many classes of challenging problems including discontinuous diffusion, convection- diffusion, and Helmholtz equations. It has built-in structure that makes it simple to generalize in several interesting directions.

97 MATHEMATICS AND COMPUTING↗