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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

CyanoSCape: Freshwater Phytoplankton and Floating Aquatic Vegetation Biodiversity

In Southern Africa, the impacts of anthropogenic activities on biodiversity and ecosystem services are exacerbated by the climate crisis. Rapid land use change and the lack of emphasis on environmentally sustainable agricultural practices has hindered hydrological processes and compromised riverine and aquatic ecosystems. This poses obvious risks to natural/indigenous aquatic biodiversity and long-term ecosystem sustainability. Phytoplankton serve as the foundation of the freshwater food web with zooplankton as consumers, which feed fish, invertebrates, and so on up the food chain that comprises the biodiversity of the freshwater system that serves as habitat for biodiversity as well. The diversity of phytoplankton (microscopic organisms) includes photosynthesizing bacteria (cyanobacteria), plant-like diatoms, dinoflagellates, and green algae. Nutrient run-off from agricultural fertilizers and urban overflows, warm temperatures, abundant light availability and compromised hydrological systems provide an ideal environment for cyanobacteria to flourish. Increased prevalence of cyanobacteria, due to both natural and anthropogenic causes, can incur significant effects on the biodiversity of the overall phytoplankton assemblage. These bloom forming algae can significantly outcompete other phytoplankton classes in warmer and eutrophic waters where they are quick to dominate the freshwater system. Eutrophication and toxic cyanobacteria blooms (cyanoHABs) in the inland waters of the Greater Cape Floristic Region (GCFR) incur significant effects on the biodiversity of the overall phytoplankton assemblage and provide a favorable environment forthe overgrowth of floating aquatic vegetation (FAV), which is often invasive and associated with reduced aquatic biodiversity. The algal biodiversity of the GCFR’s freshwater systems is not well characterized. Hyperspectral optical observations are expected to facilitate the improvement of current phytoplankton functional type retrievals significantly, as the sensitivity is sufficient that the distinctive, fine spectral features of different phytoplankton groups can be detected. This will enable testing emerging algorithms and inform the development of new algorithms for use with upcoming hyperspectral satellite missions in this decade. Innovations in optical sensor sensitivity and next generation machine learning capabilities considerably enhance the potential for accurate and rapid detection of phytoplankton, namely the presence, extent, and diversity of cyanobacteria present in cyanoHABs and additionally, invasive FAV. Upcoming hyperspectral satellite missions such as NASA’s Surface Biology and Geology (SBG), Plankton, Aerosol, Cloud, ocean Ecosystem (PACE), and the European Space Agency’s Copernicus Hyperspectral Imaging Mission (CHIME) will provide imagery with unprecedented spectral and spatial resolution which will further enable the discovery of linkages between the seasonality and dynamics of HABs and FAV. The overarching goal of this project is to utilize hyperspectral data, with recently developed and next-generation algorithms, to determine the biodiversity of freshwater systems phytoplankton assemblage with emphasis on genus level distinction, as well as monitor the prevalence and diversity of FAV.

CyanoSCape↗
NASA NTRSDate not supplied

Tool CREOL: Using Earth Observations to Monitor Ecosystem Health for the Preservation of Coastal Louisiana

Submerged aquatic vegetation (SAV) in Louisiana’s Breton National Wildlife Refuge (BNWR) has been steadily declining due to anthropogenic and climate induced changes, contributing to the degradation of the barrier island system. In the Chandeleur Islands region, events such as Hurricane Katrina and the Deepwater Horizon Oil Spill have reduced the barrier islands’ ability to control storm surge and have decreased seagrass extent. Seagrasses promote aquatic biodiversity, absorb excess nutrients, and reduce the rate of shoreline erosion by trapping suspended sediment. The tool for Coastal Remote Ecological Observations in Louisiana (Tool CREOL), a novel GUI, was developed using Google Earth Engine to assess historical changes to and present conditions of the Chandeleur Islands’ land cover, water quality, and seagrass extent. Developed in collaboration with the Louisiana Coastal Protection and Restoration Authority and the Louisiana Department of Natural Resources, the tool uses Earth observations acquired from NASA’s Landsat 5 TM, Landsat 7 ETM+ and Landsat 8 OLI to analyze land cover, turbidity, chlorophyll-a, and seagrass extent from 1984 to today. Tool CREOL enables continuous monitoring of the Chandeleur Islands and will aid in the identification of ideal areas for island restoration and seagrass revegetation.

Taryn Waite↗
NASA NTRS2022

Ongoing Progress Toward NASA's Surface Biology and Geology Mission

Pursuant to recommendations by the National Academies of Science, Engineering and Medicine's Earth Science Decadal Survey, the National Aeronautics and Space Administration (NASA) has announced the development of an Earth System Observatory (ESO), a series of missions designed to observe processes across the Earth's interior, surface and atmosphere. A key component of this system is the Surface Biology and Geology (SBG) investigation. SBG will measure the composition and properties of Earth's land, inland waters, and coastal oceans. The notional architecture consists of multiple spacecraft slated for launch in the 2027–2028 timeframe (Figure 1). Target science questions and geophysical variables span diverse disciplines including terrestrial and aquatic ecology, geology, vulcanology, hydrology and cryospheric sciences (Figure 2). Beyond simply measuring geophysical variables for each discipline, SBG will provide information about the links between the different domains, enabling a more comprehensive understanding of the Earth as a connected system. SBG measurements will also benefit a wide range of societal applications including agriculture, terrestrial and aquatic biodiversity, natural hazards, public health, and management of water and other natural resources. SBG will also coordinate measurements, data products, and analyses with other ESO elements to deliver an integrated Earth System perspective of Earth and its changing climate.

David R. Thompson↗
NASA NTRS2018

Satellite Sensor Requirements for Monitoring Essential Biodiversity Variables of Coastal Ecosystems

The biodiversity and high productivity of coastal terrestrial and aquatic habitats are the foundation for important benefits to human societies around the world. These globally distributed habitats need frequent and broad systematic assessments, but field surveys only cover a small fraction of these areas. Satellite-based sensors can repeatedly record the visible and near-infrared reflectance spectra that contain the absorption, scattering, and fluorescence signatures of functional phytoplankton groups, colored dissolved matter, and particulate matter near the surface ocean, and of biologically structured habitats (floating and emergent vegetation, benthic habitats like coral, seagrass, and algae). These measures can be incorporated into Essential Biodiversity Variables (EBVs), including the distribution, abundance, and traits of groups of species populations, and used to evaluate habitat fragmentation. However, current and planned satellites are not designed to observe the EBVs that change rapidly with extreme tides, salinity, temperatures, storms, pollution, or physical habitat destruction over scales relevant to human activity. Making these observations requires a new generation of satellite sensors able to sample with these combined characteristics: (1) spatial resolution on the order of 30 to 100-m pixels or smaller; (2) spectral resolution on the order of 5 nm in the visible and 10 nm in the short-wave infrared spectrum (or at least two or more bands at 1,030, 1,240, 1,630, 2,125, and/or 2,260 nm) for atmospheric correction and aquatic and vegetation assessments; (3) radiometric quality with signal to noise ratios (SNR) above 800 (relative to signal levels typical of the open ocean), 14-bit digitization, absolute radiometric calibration less than 2%, relative calibration of 0.2%, polarization sensitivity less than 1%, high radiometric stability and linearity, and operations designed to minimize sunglint; and (4) temporal resolution of hours to days. We refer to these combined specifications as H4 imaging. Enabling H4 imaging is vital for the conservation and management of global biodiversity and ecosystem services, including food provisioning and water security. An agile satellite in a 3-d repeat low-Earth orbit could sample 30-km swath images of several hundred coastal habitats daily. Nine H4 satellites would provide weekly coverage of global coastal zones. Such satellite constellations are now feasible and are used in various applications.

aquatic↗
NASA NTRS2020

Lower Omo Food Security & Agriculture: Mapping Land Cover Change in Unprotected and Protected Areas in the Lower Omo River Valley, Ethiopia

Ethiopia is home to unique wildlife, biodiversity, and ecosystem services and, like much of the world, is undergoing population growth, development, and land use change. As a result, some biodiverse regions may be at risk of being urbanized, cultivated as agricultural plots, or losing access to water bodies that are essential for maintaining both terrestrial and aquatic life. The DEVELOP team partnered with the Ethiopian Wildlife Conservation Authority to quantify the land cover change between the years 1994, 2010, and 2018. The team utilized Ethiopia’s dry season (January to May) for training point development which was crucial in differentiating the level of greenness between the four land cover classes: water, natural vegetation, cultivated land, and bare ground. The study area covered 62,000 km2 of the Lower Omo River Valley and includes eight protected areas. Data from Landsat 5 Thematic Mapper, Landsat 7 Enhanced Thematic Mapper Plus, Landsat 8 Operational Land Imager, and Shuttle Radar Topography Mission were used to employ a Random Forest classifier and identify the four classes within Google Earth Engine. For each of the supervised classifications, overall model accuracy was between 83% (2018) and 89% (1994). Between 1994 and 2018, the Lower Omo Valley experienced an overall increase of 258% (919 km2) in water and 291% (7,188 km2) in cultivated areas, while experiencing a 9% (2,761 km2) decrease in natural vegetation and 19% (5,346 km2) bare ground. There was an increase in water and cultivated land and a decrease in natural vegetation and bare ground in unprotected areas and all protected areas. However, protected areas maintained natural vegetation better than unprotected areas and only experienced a 1% (59 km2) loss compared to a 10% (2,701 km2) loss in unprotected areas.

Food Security & Agriculture↗
NASA NTRS2020

Lower Omo Food Security & Agriculture: Mapping Land Cover Change in Unprotected and Protected Areas in the Lower Omo River Valley, Ethiopia

Ethiopia is home to unique wildlife, biodiversity, and ecosystem services and, like much of the world, is undergoing population growth, development, and land use change. As a result, some biodiverse regions may be at risk of being urbanized, cultivated as agricultural plots, or losing access to water bodies that are essential for maintaining both terrestrial and aquatic life. The DEVELOP team partnered with the Ethiopian Wildlife Conservation Authority to quantify the land cover change between the years 1994, 2010, and 2018. The team utilized Ethiopia’s dry season (January to May) for training point development which was crucial in differentiating the level of greenness between the four land cover classes: water, natural vegetation, cultivated land, and bare ground. The study area covered 62,000 sq.km of the Lower Omo River Valley and includes eight protected areas. We used Landsat 5 Thematic Mapper, Landsat 7 Enhanced Thematic Mapper Plus, Landsat 8 Operational Land Imager, and Shuttle Radar Topography Mission imagery within Google Earth Engine to employ a Random Forest Classifier and identify these four distinct classes. For each of our supervised classifications, overall model accuracy was between 83% (2018) and 89% (1994). Between 1994 and 2018, the Lower Omo Valley experienced an overall increase of 258.57% in water bodies and 291.23% in cultivated areas, while experiencing an 8.91% decrease in natural vegetation and 18.76% bare ground. There was an increase in water bodies and cultivated land and a decrease in natural vegetation and bare ground in unprotected areas and all protected areas. However, protected areas disproportionately experienced an increase in land cover change, including Tama Community Conservation Area which saw a 17,272.33% increase between 1994 and 2018.

Food Security & Agriculture↗
NASA NTRSDate not supplied

NASA’s Prototype Spectral Water Inversion Processor and Emulator (SWIPE): Towards Global Coastal and Inland Water Quality and Algal Biodiversity Monitoring

Degradation of Earth’s inland water resources due to anthropogenic perturbations and climate anomalies at both local and global scales continues to place human health at substantial risk. There is now a growing necessity to develop pragmatic approaches that allow timely and effective extrapolation of local processes, to spatially resolved global products, and to promote operational and sustainable resource policy management. This presentation will provide updates on NASA’s prototype open-source aquatic modeling platform, Spectral Water Inversion Processor and Emulator (SWIPE), which is a comprehensive, multi-faceted modeling platform for both forward and inverse modeling of diverse aquatic ecosystems from the benthos to top-of-atmosphere (TOA). SWIPE provides a cohesive application which leverages recent advancements in particle modeling, Big Data analytics, and machine learning to develop a high-fidelity synthetic training ground for sensitivity studies and algorithm development for multispectral or upcoming hyperspectral missions. Some of the prominent features of SWIPE to be discussed include: 1. Advanced hyperspectral modeling of globally diverse algal and non-algal particles using a novel two-layer coated sphere scattering model and radiative transfer modeling, 2. Massive, highly detailed synthetic spectral libraries of Analysis-Ready-Data (ARD) which include spectral libraries of particle microphysics, water biogeophysical and optical properties, as well as surface and TOA reflectances at 1 nm resolution, 3. An ensemble of pre-built analytic, machine learning, and deep learning inversion algorithms for various water quality and biodiversity related retrieval parameters and uncertainty quantification, 4. Sensor-agnostic water quality inversion at wide ranging spatial and spectral resolutions including a codebase for seamless application in the Google Earth Engine and NASA Earth Exchange (NEX) for planetary scale analysis. SWIPE will be a fully open-source platform based in python with comprehensive documentation, tutorials, and options for distributed computing on high performance computing clusters or on single, local machines. Further, we will discuss how we envision SWIPE contributing towards a global analysis of coastal and inland water quality dynamics.

top-of-atmosphere (TOA)↗
NASA NTRS2022

The Future: Nasa’s Surface Biology and Geology Mission and the Dark (Aquatic) Side

With the release of NASA’s Earth System Observatory (ESO) measurement targets that includes studying the Earth’s Surface Biology and Geology (SBG), a global visible to shortwave infrared imaging spectrometer and a multispectral thermal infrared imager have been planned to launch in the late 2020s. This mission will enable unprecedented interdisciplinary science and applications relevant to studying the biology and geology of the Earth's surface. Measurement targets are directly aligned for studying coastal and inland waters ecosystems and water quality, including coralreef ecosystems, snow and ice, mineralogy, volcanology, biology, ecology, biodiversity, and components of radiative forcing from the surface such as greenhouse gas emissions. The observations not only have scientific value in studying feedbacks and interactions of surface processes (e.g., harmful algal blooms, domoic acid, oil spills, and other hazardous events), but also societal benefit – with the capacity to support real-world decision-making such as response to theseevents and inland water conservation, protection of drinking water quality for public and environmental health, and habitat conservation. The work presented here outlines the conducted mission and architecture study and the initiation of science performance trades (signal sensitivity; spectral, spatial, and temporal resolution; and atmospheric effects) informing the design of the SBG segment of the ESO providing the most value to myriad science and applications as possible. Science and applications synergies and algorithms with the Plankton, Aerosol, Cloud, and ocean Ecosystem (PACE) and the Geostationary Littoral Imaging and Monitoring Radiometer (GLIMR) is opportunistic for advancing aquatics research and applications.

THE FUTURE↗
NASA NTRS2018

NASA NeMO-Net

We present preliminary results from NASA NeMO-Net, the first neural multi-modal observation and training network for global coral reef assessment. NeMO-Net is an open-source deep convolutional neural network (CNN) and interactive active learning training software in development which will assess the present and past dynamics of coral reef ecosystems. NeMO-Net exploits active learning and data fusion of mm-scale remotely sensed 3D images of coral reefs captured using fluid lensing with the NASA FluidCam instrument, presently the highest-resolution remote sensing benthic imaging technology capable of removing ocean wave distortion, as well as hyperspectral airborne remote sensing data from the ongoing NASA CORAL mission and lower-resolution satellite data to determine coral reef ecosystem makeup globally at unprecedented spatial and temporal scales. Aquatic ecosystems, particularly coral reefs, remain quantitatively misrepresented by low- resolution remote sensing as a result of refractive distortion from ocean waves, optical attenuation, and remoteness. Machine learning classification of coral reefs using FluidCam mm-scale 3D data show that present satellite and airborne remote sensing techniques poorly characterize coral reef percent living cover, morphology type, and species breakdown at the mm, cm, and meter scales. Indeed, current global assessments of coral reef cover and morphology classification based on km-scale satellite data alone can suffer from segmentation errors greater than 40%, capable of change detection only on yearly temporal scales and decameter spatial scales, significantly hindering our understanding of patterns and processes in marine biodiversity at a time when these ecosystems are experiencing unprecedented anthropogenic pressures, ocean acidification, and sea surface temperature rise. NeMO-Net leverages our augmented machine learning algorithm that demonstrates data fusion of regional FluidCam (mm, cm-scale) airborne remote sensing with global low-resolution (m, km-scale) airborne and spaceborne imagery to reduce classification errors up to 80% over regional scales. Such technologies can substantially enhance our ability to assess coral reef ecosystems dynamics.

NASA↗
NASA NTRS2018

NeMO-Net & Fluid Lensing: The Neural Multi-Modal Observation & Training Network for Global Coral Reef Assessment Using Fluid Lensing Augmentation of NASA EOS Data

We present preliminary results from NASA NeMO-Net, the first neural multi-modal observation and training network for global coral reef assessment. NeMO-Net is an open-source deep convolutional neural network (CNN) and interactive active learning training software in development which will assess the present and past dynamics of coral reef ecosystems. NeMO-Net exploits active learning and data fusion of mm-scale remotely sensed 3D images of coral reefs captured using fluid lensing with the NASA FluidCam instrument, presently the highest-resolution remote sensing benthic imaging technology capable of removing ocean wave distortion, as well as hyperspectral airborne remote sensing data from the ongoing NASA CORAL mission and lower-resolution satellite data to determine coral reef ecosystem makeup globally at unprecedented spatial and temporal scales. Aquatic ecosystems, particularly coral reefs, remain quantitatively misrepresented by low-resolution remote sensing as a result of refractive distortion from ocean waves, optical attenuation, and remoteness. Machine learning classification of coral reefs using FluidCam mm-scale 3D data show that present satellite and airborne remote sensing techniques poorly characterize coral reef percent living cover, morphology type, and species breakdown at the mm, cm, and meter scales. Indeed, current global assessments of coral reef cover and morphology classification based on km-scale satellite data alone can suffer from segmentation errors greater than 40%, capable of change detection only on yearly temporal scales and decameter spatial scales, significantly hindering our understanding of patterns and processes in marine biodiversity at a time when these ecosystems are experiencing unprecedented anthropogenic pressures, ocean acidification, and sea surface temperature rise. NeMO-Net leverages our augmented machine learning algorithm that demonstrates data fusion of regional FluidCam (mm, cm-scale) airborne remote sensing with global low-resolution (m, km-scale) airborne and spaceborne imagery to reduce classification errors up to 80% over regional scales. Such technologies can substantially enhance our ability to assess coral reef ecosystems dynamics.

satellite data↗