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All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

The 2024 “Hacking Limnology” Workshop Series and Virtual Summit: Increasing Inclusion, Participation, and Representation in the Aquatic Sciences

The 4th Aquatic Ecosystem MOdeling Network—Junior (AEMON-J) Hacking Limnology Workshop and 5th Virtual Summit: Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS) convened 15–19 July 2024. During the week, these joint communities engaged in activities at the intersection of big data, open science, modeling, remote sensing, and the aquatic sciences. The weeklong event, with over 100 aquatic science practitioners and enthusiasts, followed a similar structure to previous years, comprising three days of workshops followed by two days of the virtual summit.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

The 2025 “Hacking Limnology” Workshop Series and DSOS Virtual Summit: A Half Decade of Data‐Intensive Aquatic Science

The 5th Aquatic Ecosystem MOdeling Network—Junior (AEMON-J) “Hacking Limnology” Workshop and 6th Virtual Summit: Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS) convened 21–25 July 2025. As in previous years (Fig. 1; Meyer and Zwart 2020; Meyer et al. 2021b, 2021c, 2022, 2024), the virtual workshops and summit were free of charge, the content was formatted to allow for broad engagement from a globally distributed audience, and workshop materials and recordings were made available on the AEMON-J/DSOS archive (Meyer et al. 2021a). In contrast to previous years, which primarily focused on inland aquatic ecosystems, this year's workshops and summit showcased a notable plurality of ecosystem types, with workshops spanning marine, riverine, and lacustrine environments. The weeklong event brought together researchers and practitioners interested in the nexus of data science, open science, and the aquatic sciences, hosting between 47 and 65 attendees at a single time and a higher number of registrants (n = 389), who might opt to access the material asynchronously.

Meyer, Michael F. [US Geological Survey, Portland,↗
DOE OSTI2024

Challenges of open data in aquatic sciences: issues faced by data users and data providers

Free use and redistribution of data (i.e., Open Data) increases the reproducibility, transparency, and pace of aquatic sciences research. However, barriers to both data users and data providers may limit the adoption of Open Data practices. Here, we describe common Open Data challenges faced by data users and data providers within the aquatic sciences community (i.e., oceanography, limnology, hydrology, and others). These challenges were synthesized from literature, authors’ experiences, and a broad survey of 174 data users and data providers across academia, government agencies, industry, and other sectors. Through this work, we identified seven main challenges: 1) metadata shortcomings, 2) variable data quality and reusability, 3) open data inaccessibility, 4) lack of standardization, 5) authorship and acknowledgement issues 6) lack of funding, and 7) unequal barriers around the globe. Our key recommendation is to improve resources to advance Open Data practices. This includes dedicated funds for capacity building, hiring and maintaining of skilled personnel, and robust digital infrastructures for preparation, storage, and long-term maintenance of Open Data. Further, to incentivize data sharing we reinforce the need for standardized best practices to handle data acknowledgement and citations for both data users and data providers. We also highlight and discuss regional disparities in resources and research practices within a global perspective.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2018

Toward Long-Term Aquatic Science Products from Heritage Landsat Missions

This paper aims at generating a long-term consistent record of Landsat-derived remote sensing reflectance (Rrs) products, which are central for producing downstream aquatic science products (e.g., concentrations of total suspended solids). The products are derived from Landsat-5 and Landsat-7 observations leading to Landsat-8 era to enable retrospective analyses of inland and nearshore coastal waters. In doing so, the data processing was built into the SeaWiFS Data Analysis System (SeaDAS) followed by vicariously calibrating Landsat-7 and -5 data using reference in situ measurements and near-concurrent ocean color products, respectively. The derived Rrs products are then validated using (a) matchups using the Aerosol Robotic Network (AERONET) data measured by in situ radiometers, i.e., AERONET-OC, and (b) ocean color products at select sites in North America. Following the vicarious calibration adjustments, it is found that the overall biases in Rrs products are significantly reduced. The root-mean-square errors (RMSE), however, indicate noticeable uncertainties due to random and systematic noise. Long-term (since 1984) seasonal Rrs composites over 12 coastal and inland systems are further evaluated to explore the utility of Landsat archive processed via SeaDAS. With all the qualitative and quantitative assessments, it is concluded that with careful algorithm developments, it is possible to discern natural variability in historic water quality conditions using heritage Landsat missions. This requires the changes in Rrs exceed maximum expected uncertainties, i.e., 0.0015 [1/sr], estimated from mean RMSEs associated with the matchups and intercomparison analyses. It is also anticipated that Landsat-5 products will be less susceptible to uncertainties in turbid waters with Rrs(660) > 0.004 [1/sr], which is equivalent of ~1.2% reflectance. Overall, end-users may utilize heritage Rrs products with "fitness-for-purpose" concept in mind, i.e., products could be valuable for one application but may not be viable for another. Further research should be dedicated to enhancing atmospheric correction to account for non-negligible near-infrared reflectance in CDOM-rich and extremely turbid waters.

Pahlevan, Nima↗
NASA NTRS2023

Validity of the Landsat Surface Reflectance Archive for Aquatic Science: Implications for Cloud-Based Analysis

Originally developed for terrestrial science and applications, the US Geological Survey Landsat surface reflectance (SR) archive spanning ~ 40 yr of observations has been increasingly utilized in large‐scale water‐quality studies. These products, however, have not been rigorously validated using in situ measured reflectance. This letter quantifies and demonstrates the quality of the SR products by harnessing a sizeable global dataset ( N = 1100). We found that the Landsat 8/9 SR in the green and red bands marginally meet the targeted accuracy requirements (30%), whereas the uncertainties in the blue and coastal‐aerosol bands ranged from 48% to 110%. We further observed > +25% biases in the visible bands of Landsat 5/7 SR, which can introduce an apparent downward trend when applied in time‐series analyses combined with Landsat 8/9. Users must exercise caution when using this archive for trend analyses, and progress in atmospheric correction is required to foster advanced applications of the Landsat archive for aquatic science.

Landsat, lakes, harmful algal blooms↗
NASA NTRS2018

Prioritizing Aquatic Science and Applications Needs in the Chesapeake Bay for a Space-Borne Hyperspectral Mission

The Chesapeake Bay is the largest estuary in North America, benefiting a growing population through its ecosystem services, fishing, recreations, and transportation routes. Studies indicate the health of the Bay as seen some improvement in recent years, yet threats to its health persist (e.g. warming, pollution nutrient run-off). Increasing human activities in coastal regions requires constant vigilance by agencies managing water quality, to ensure the safety of the population. Since April 2018, an interagency working group has been meeting monthly and a daylong workshop was convened with science and applications stakeholders around the overall theme of monitoring water quality from space. Current ocean color images indicate bloom locations used to guide in situ sampling efforts, despite limited spatial, spectral and temporal resolution. High resolution hyperspectral remote sensing provides a potential opportunity to measure additional indicators of ecological health and water quality. Assessing the needs of the aquatic user community around the Chesapeake Bay will inform science and applications recommendations during the current architecture study for a Surface Biology and Geology (SBG) Mission, as well as future scoping studies of other coastal and inland water bodies.

Schollaert Uz, Stephanie↗
DOE OSTI2025

Clarifying the trophic state concept to advance macroscale freshwater science and management

For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use‐specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth are used to classify TS based on autotrophic production, whereas phosphorus, dissolved organic carbon, and true color are used to classify TS based on both autotrophic and heterotrophic production. Both classification approaches aim to characterize an ecosystem's function broadly, but with varying degrees of autotrophic and heterotrophic processes considered in those characterizations. Moreover, differing classification schemes can create inconsistent interpretations of ecosystem integrity. For example, the US Clean Water Act focuses exclusively on algal threats to water quality, framed in terms of eutrophication in response to nutrient loading. This usage lacks information about non‐algal threats to water quality, such as dystrophication in response to dissolved organic carbon loading. Consequently, the TS classification schemes used to identify eutrophication and dystrophication may refer to ecosystems similarly (e.g., oligotrophic and eutrophic), yet these categories are derived from different proxies. These inconsistencies in TS classification schemes may be compounded when interdisciplinary projects employ varied TS frameworks. Even with these shortcomings, TS can still be used to distill information on complex aquatic ecosystem function into a set of generalizable expectations. The usefulness of distilling complex information into a TS index is substantial such that usage inconsistencies should be explicitly addressed and resolved. To emphasize the consequences of diverging TS classification schemes, we present three case studies for which an improved understanding of the TS concept advances freshwater research, management efforts, and interdisciplinary collaboration. To increase clarity in TS, the aquatic sciences could benefit from including information about the proxy variables, ecosystem type, as well as the spatiotemporal domains used to classify TS. As the field of aquatic sciences expands and climatic irregularity increases, we highlight the importance of re‐evaluating fundamental concepts, such as TS, to ensure their compatibility with evolving science.

classification↗
NASA NTRS2014

On-Orbit Radiometric Characterization of OLI (Landsat 8) for Applications in Aquatic Remote Sensing

Landsat-8 carries two separate sensors, namely the Operational Land Imager (OLI) and the Thermal Infrared Radiometer Suite (TIRS), that image the earth surface throughout the visible and thermal portions of the spectrum. Compared to Landsat heritage sensors, the OLI has enhanced features, which include its 12-bit radiometric resolution and the addition of a band centered at 443 nm. The dramatically improved data quality/quantity expands existing applications of Landsat imagery in aquatic sciences from the retrieval of bio-geochemical properties, such as near-surface concentrations of chlorophyll-a (CHL) and total suspended solids (TSS), to benthic mapping. This study offers analysis of OLI's absolute radiometric performance over bodies ofwater using benchmark observations, namely the top-of-atmosphere (TOA) ocean color observations and marine in situ radiometric measurements. Sensor-to-sensor comparisons are performed to derive gain factors (g1) from near-concurrent observations in TOA radiance and reflectance domains. The gains in the radiance domain were further validated/adjusted by determining a second set of gains (g2) via analysis of OLI-derived water-leaving radiance, i.e., L(sub w) (gamma), against in situ measurements made either at the Ocean Color AErosol RObotic NETwork (AERONETOC) sites or during field campaigns. The analyses yield the OLI calibration uncertainties that need to be accounted forwhen studying aquatic environments. Itwas found that, for the visible and near-infrared channels, the OLI radiometric responses, on average, are well in agreement (b 2 % discrepancies) with the TOA radiances estimated by ocean color satellites or those predicted by models based onmeasurements of aquatic and atmospheric properties. However, the TOA radiance at the new 443-nm band is found to be, on average, 3.4 % larger than the reference observations. The inter-sensor comparisons in the reflectance domain, however, indicated slightly different results with the OLI responses being low in the blue bands. To enhance the retrieval accuracy of aquatic-science products from OLI datasets, sets of temporally averaged gains (radiance and reflectance) are derived and recommended for use prior to the retrieval of in-water products.

Remote Sensing↗
NASA NTRS2017

Landsat 8 Remote Sensing Reflectance (Rrs) Products: Evaluations, Intercomparisons, and Enhancements

The Operational Land Imager (OLI) onboard Landsat-8 is generating high-quality aquatic science products, the most critical of which is the remote sensing reflectance (Rrs), defined as the ratio of water-leaving radiance to the total downwelling irradiance just above water. The quality of the Rrs products has not, however, been extensively assessed. This manuscript provides a comprehensive evaluation of Level-1B, i.e., top of atmosphere reflectance, and Rrs products available from OLI imagery under near-ideal atmospheric conditions in moderately turbid waters. The procedure includes a) evaluations of the Rrs products at sites included in the Ocean Color component of the Aerosol Robotic Network (AERONET-OC), b) intercomparisons and cross-calibrations against other ocean color products, and c) optimizations of vicarious calibration gains across the entire OLI observing swath. Results indicate that the near-infrared and shortwave infrared (NIR-SWIR) band combinations yield the most robust and stable Rrs retrievals in moderately turbid waters. Intercomparisons against products derived from the Visible Infrared Imaging Radiometer Suite (VIIRS) and the Moderate Resolution Imaging Spectroradiometer onboard the Aqua platform (MODISA) indicate slight across-track non-uniformities (<1%) associated with OLI scenes in the blue bands. In both product domains (TOA and Rrs), on average, the OLI products were found larger in radiometric responses in the blue channels. Following the implementation of updated vicarious calibration gains and accounting for across-track non-uniformities, matchup analyses using independent in-situ validation data confirmed improvements in Rrs products. These findings further support high-fidelity OLI-derived aquatic science products in terms of both demonstrating a robust atmospheric correction method and providing consistent products across OLI's imaging swath.

Pahlevan, Nima↗
NASA NTRS1996

Algal Accessory Pigment Detection Using AVIRIS Image-Derived Spectral Radiance Data

Visual and derivative analyses of AVIRIS spectral data can be used to detect algal accessory pigments in aquatic communities. This capability extends the use of remote sensing for the study of aquatic ecosystems by allowing detection of taxonomically significant pigment signatures which yield information about the type of algae present. Such information allows remote sensing-based assessment of aquatic ecosystem health, as in the detection of nuisance blooms of cyanobacteria or toxic blooms of dinoflagellates. Remote sensing of aquatic systems has traditionally focused on quantification of chlorophyll a, a photoreactive (and light-harvesting) pigment which is common to all algae as well as cyanobacteria (bluegreen algae). Due to the ubiquitousness of this pigment within algae, chl a is routinely measured to estimate algal biomass both during ground-truthing and using various airborne or satellite based sensors, including AVIRIS. Within the remote sensing and aquatic sciences communities, ongoing research has been performed to detect algal accessory pigments for assessment of algal population composition. This research is based on the fact that many algal accessory pigments are taxonomically significant, and all are spectrally unique. Aquatic scientists have been refining pigment analysis techniques, primarily high performance liquid chromatography, or HPLC, to detect specific pigments as a time-saving alternative to individual algal cell identifications and counts. Remote sensing scientists are investigating the use of pigment signatures to construct pigment libraries analogous to mineral spectral libraries used in geological remote sensing applications. The accessory pigment approach has been used successfully in remote sensing using data from the Thematic Mapper, low-altitude, multiple channel scanners, field spectroradiometers and the AVIRIS hyperspectral scanner. Due to spectral and spatial resolution capabilities, AVIRIS is the sensor of choice for such studies. We present here our results on detection of algal accessory pigments using AVIRIS data.

Richardson, Laurie L.↗
NASA NTRS2020

150 Shades of Green: Using the Full Spectrum of Remote Sensing Reflectance to Elucidate Color Shifts in the Ocean

This article proposes a simple and intuitive classification system by which to define full spectral remote sensing reflectance (Rrs(λ)) data with a quantitative output that enables a more manageable handling of spectral information for aquatic science applications. The weighted harmonic mean of the Rrs(λ) wavelengths outputs an Apparent Visible Wavelength (in units of nanometers), representing a one-dimensional geophysical metric of color that is inherently correlated to spectral shape. This dimensionality reduction of spectral information combined with the output along a continuum of wavelength values offers a robust and user-friendly means to describe and analyze spectral Rrs(λ) in terms of spatial and temporal trends and variability. The uncertainty in the algorithm's estimation of spectral shape is demonstrated on a global scale, in addition to the utility of the algorithm to discern spectral-spatial-temporal trends in the ocean, on a per-pixel basis for the entire 22 year continuous ocean color (SeaWiFS and MODIS-Aqua) time-series. This technique can be applied to datasets of varying multi- and hyper-spectral resolutions, providing continuity between heritage and future satellite sensors, and further enabling an effective means of elucidating similarities or differences in complex spectral signatures within the constraints of two dimensions. This straightforward means of conceptualizing multi-dimensional variability can help maximize the potential of the spectral information embedded in remote sensing data.

ocean color↗
NASA NTRS2023

Extending Aquatic Spectral Information with the First Radiometric IR-B Field Observations

Planetary radiometric observations enable remote sensing of biogeochemical parameters to describe spatiotemporal variability in aquatic ecosystems. For approximately the last half century, the science of aquatic radiometry has established a knowledge base using primarily, but not exclusively, visible wavelengths. Scientific subdisciplines supporting aquatic radiometry have evolved hardware, software, and procedures to maximize competency for exploiting visible wavelength information. This perspective culminates with the science requirement that visible spectral resolution must be continually increased to extract more information. Other sources of information, meanwhile, remain underexploited, particularly information from nonvisible wavelengths. Herein, absolute radiometry is used to evaluate spectral limits for deriving and exploiting aquatic data products, specifically the normalized water-leaving radiance, Γ(λ)⁠, and its derivative products. Radiometric observations presented herein are quality assured for individual wavebands, and spectral verification is conducted by analyzing celestial radiometric results, comparing agreement of above- and in-water observations at applicable wavelengths, and evaluating consistency with bio-optical models and optical theory. The results presented include the first absolute radiometric field observations of Γ(λ) within the IR-B spectral domain (i.e. spanning 1400–3000 nm), which indicate that IR-B signals confer greater and more variable flux than formerly ascribed. Black-pixel processing, a routine correction in satellite and in situ aquatic radiometry wherein a spectrum is offset corrected relative to a nonvisible waveband (often IR-B or a shorter legacy waveband) set to a null value, is shown to degrade aquatic spectra and derived biogeochemical parameters.

aquatic optics↗
NASA NTRS2021

NASA's Surface Biology and Geology Designated Observable: A Perspective on Surface Imaging Algorithms

The 2017–2027 National Academies’ Decadal Survey, Thriving on Our Changing Planet, recommended Surface Biology and Geology (SBG) as a “Designated Targeted Observable” (DO). The SBG DO is based on the need for capabilities to acquire global, high spatial resolution, visible to shortwave infrared (VSWIR; 380–2500 nm; ~30 m pixel resolution) hyperspectral (imaging spectroscopy) and multispectral midwave and thermal infrared (MWIR: 3–5 μm; TIR: 8–12 μm; ~60 m pixel resolution) measurements with sub-monthly temporal revisits over terrestrial, freshwater, and coastal marine habitats. To address the various mission design needs, an SBG Algo-rithms Working Group of multidisciplinary researchers has been formed to review and evaluate the algorithms applicable to the SBG DO across a wide range of Earth science disciplines, including terrestrial and aquatic ecology, atmospheric science, geology, and hydrology. Here, we summarize current state-of-the-practice VSWIR and TIR algorithms that use airborne or orbital spectral imaging observations to address the SBG DO priorities identified by the Decadal Survey: (i) terrestrial vegetation physiology, functional traits, and health; (ii) inland and coastal aquatic ecosystems physiology, functional traits, and health; (iii) snow and ice accumulation, melting, and albedo; (iv) active surface composition (eruptions, landslides, evolving landscapes, hazard risks); (v) effects of changing land use on surface energy, water, momentum, and carbon fluxes; and (vi) managing agriculture, natural habitats, water use/quality, and urban development. We review existing algorithms in the following categories: snow/ice, aquatic environments, geology, and terrestrial vegetation, and summarize the community-state-of-practice in each category. This effort synthesizes the findings of more than 130 scientists.

Aquatic↗
DOE OSTI2024

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

Specialized or secondary metabolites are small molecules of biological origin, often showing potent biological activities with applications in agriculture, engineering and medicine. Usually, the biosynthesis of these natural products is governed by sets of co-regulated and physically clustered genes known as biosynthetic gene clusters (BGCs). To share information about BGCs in a standardized and machine-readable way, the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard and repository was initiated in 2015. Since its conception, MIBiG has been regularly updated to expand data coverage and remain up to date with innovations in natural product research. Here, we describe MIBiG version 4.0, an extensive update to the data repository and the underlying data standard. In a massive community annotation effort, 267 contributors performed 8304 edits, creating 557 new entries and modifying 590 existing entries, resulting in a new total of 3059 curated entries in MIBiG. Particular attention was paid to ensuring high data quality, with automated data validation using a newly developed custom submission portal prototype, paired with a novel peer-reviewing model. MIBiG 4.0 also takes steps towards a rolling release model and a broader involvement of the scientific community. MIBiG 4.0 is accessible online at https://mibig.secondarymetabolites.org/.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Comparison of Eco-Friendly Ionic Liquids and Commercial Bio-Derived Lubricant Additives in Terms of Tribological Performance and Aquatic Toxicity

Approximately half of the lubricants sold globally find their way into the environment. The need for Environmentally Acceptable Lubricants (EALs) is gaining increased recognition. A lubricant is composed of a base oil and multiple functional additives. The literature has been focused on EAL base oils, with much less attention given to eco-friendly additives. This study presents the tribological performance and aquatic toxicity of four short-chain phosphonium-phosphate and ammonium-phosphate ionic liquids (ILs) as candidate anti-wear and friction-reducing additives for EALs. The results are benchmarked against those of four commercial bio-derived additives. The four ILs, at a mere 0.5 wt% concentration in a synthetic ester, demonstrated a 30–40% friction reduction and >99% wear reduction, superior to the commercial baselines. More impressively, all four ILs showed significantly lower toxicity than the bio-derived products. In an EPA-standard chronic aquatic toxicity test, the sensitive model organism, Ceriodaphnia dubia, had 90–100% survival when exposed to the ILs but 0% survival in exposure to the bio-derived products at the same concentration. This study offers scientific insights for the future development of eco-friendly ILs as lubricant additives.

36 MATERIALS SCIENCE↗
DOE OSTI2026

Comparability of Liquid Chromatography Tandem Mass Spectrometry Analysis of Dissolved Organic Matter across Laboratories

Non-targeted liquid chromatography tandem highresolution mass spectrometry (LC−MS/MS) is increasingly applied for the structure-resolved chemical analysis of dissolved organic matter (DOM). With new developments in MS instrumentation and analysis software, the approach has gained substantial momentum over the past decade. However, achieving high-quality analytical data that is reproducible and comparable across laboratories can be a bottleneck in non-targeted metabolomics and organic matter chemical analysis, especially for data reuse in repository-scale analyses. Understanding the capabilities as well as challenges of comparing LC−MS/MS data from different laboratories is necessary for inferring global trends from public data sets. To illuminate instrumentation factors that drive differences and variability, we used a standardized data analysis pipeline, including classical (CMN) and featurebased molecular networking (FBMN), to analyze data from a ring trial by 24 laboratories on identical sample sets of algal and DOM extracts that were mixed in predefined concentrations and spiked with standards. Our results showed that data sets from similar mass spectrometer types with unified instrument parameters were qualitatively comparable, resolving the same general trends and shared mass spectral features. Interlaboratory comparability was best for high-intensity features, while low-intensity features showed greater detection variability. Our analysis also highlights challenges when comparing data from instruments with different acquisition rates or operating with less standardized methods. Lastly, we provide recommendations for data integration, public data sharing, standardization, and best practices for standardized LC−MS/MS data acquisition, which will be critical for long-term time series and intercomparability of DOM chemical analyses.

DOM↗
DOE OSTI2025

Rooting for function: community‐level fine‐root traits relate to many ecosystem functions

Humans are driving biodiversity change, which also alters community functional traits. However, how changes in the functional traits of the community alter ecosystem functions—especially belowground—remains an important gap in our understanding of the consequences of biodiversity change. We test hypotheses for how the root traits of the root economics space (composed of the collaboration and conservation gradients) are associated with proxies for ecosystem functioning across grassland and forest ecosystems in both observational and experimental datasets from 810 plant communities. First, we assessed whether community-weighted means of the root economics space traits adhered to the same trade-offs as species-level root traits. Then, we examined the relationships between community-weighted mean root traits and aboveground biomass production, root standing biomass, soil fauna biomass, soil microbial biomass, decomposition of standard and plot-specific material, ammonification, nitrification, phosphatase activity, and drought resistance. We found evidence for a community collaboration gradient but not for a community conservation gradient. Yet, links between community root traits and ecosystem functions were more common than we expected, especially for aboveground biomass, microbial biomass, and decomposition. These findings suggest that changes in species composition, which alter root trait means, will in turn affect critical ecosystem functions.

54 ENVIRONMENTAL SCIENCES↗