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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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Perspective: Biochemical and Physical Constraints Associated With Preparing Thin Specimens for Single-Particle Cryo-EM

While many aspects of single-particle electron cryo-microscopy (cryo-EM) of biological macromolecules have reached a sophisticated level of development, this is not yet the case when it comes to preparing thin samples on specimen grids. As a result, there currently is considerable interest in achieving better control of both the sample thickness and the amount of area that is useful, but this is only one aspect in which improvement is needed. This Perspective addresses the further need to prevent the macromolecular particles from making contact with the air-water interface, something that can result in preferential orientation and even structural disruption of macromolecular particles. This unwanted contact can occur either as the result of free diffusion of particles during the interval between application, thinning and vitrification of the remaining buffer, or—when particles have been immobilized—by the film of buffer becoming too thin prior to vitrification. An opportunity now exists to apply theoretical and practical insights from the fields of thin-film physical chemistry and interfacial science, in an effort to bring cryo-EM sample preparation to a level of sophistication that is comparable to that of current data collection and analysis.

59 BASIC BIOLOGICAL SCIENCES↗

Experimental investigation of the influence of drainage condition on change in saturation of sheared sand

Here, this paper investigates the validity of the interpretation of results from testing saturated axisymmetric triaxial compression (ATC) sand specimens utilising three-dimensional (3D) synchrotron micro-computed tomography (SMT) to probe localised events that are completely missed or misinterpreted when analysing ATC measurements based on global standard measurements. Drained and undrained experiments were conducted at low and high back-pressures (BPs) coupled with multiple in situ 3D SMT to acquire high-resolution scans of the specimens at different axial strains. Specimens tested under low BP exhibited a large pore air volume change, which was not detected by the pump system that represents standard volume measurement. The increase in air volume caused a significant reduction in the degree of saturation leading to a possible transition from saturated to partially saturated constitutive behaviour. Undrained experiments exhibited a significant volume change contrary to the assumption of negligible volumetric strain for saturated undrained experiments. Air bubbles within the shear band for drained and undrained low-BP specimens showed opposite capillary pressure responses, increased for drained and decreased for undrained cases, due to the variation in the mechanism by which each of the two experiments predominantly counters the volume expansion within the shear band.

capillary pressure↗

Influence of gradation on shear behavior and pore water response of sand

Here, this paper examines the influence of particle size distribution (PSD) on the shearing behavior of sand using axisymmetric triaxial compression (ATC) testing in conjunction with 3D imaging using synchrotron micro-computed tomography (SMT). Angular sand was sieved to obtain a narrow gradation (uniform) and a wide gradation (non-uniform) with uniformity coefficients (C u ) of 1.2 and 3.0, respectively. Experiments were conducted under drained conditions and a constant effective cell pressure (σ$^{'}_3$) of 50 kPa at low and high back pressures (BP). Results of paired ATC-SMT were analyzed in terms of global constitutive behavior, strain localization, and localized flow characteristics. A new particle tracking algorithm is developed to expose strain localization. Relative particle translation gradient (RPTG) results revealed that gradation affects how early the shear band develops and a tendency for narrow gradation to exhibit varying degrees of diffused shear band at high axial strain (ε 1 ) even though a clear single shear band was observed at the peak strength. Geometric tortuosity (τ) is used as a quantitative parameter to assess flow changes and the efficiency of the flow path. Representative elementary volumes (REVs) inside and outside the shear band were analyzed and the results showed a variation in flow path characteristics where wide gradation specimens had preferential flow paths.

Computed tomography↗