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At least 19 records

New dimension analyses with error analysis for quaking aspen and black spruce

Dimension analysis for black spruce in wetland stands and trembling aspen are reported, including new approaches in error analysis. Biomass estimates for sacrificed trees have standard errors of 1 to 3%; standard errors for leaf areas are 10 to 20%. Bole biomass estimation accounts for most of the error for biomass, while estimation of branch characteristics and area/weight ratios accounts for the leaf area error. Error analysis provides insight for cost effective design of future analyses. Predictive equations for biomass and leaf area, with empirically derived estimators of prediction error, are given. Systematic prediction errors for small aspen trees and for leaf area of spruce from different site-types suggest a need for different predictive models within species. Predictive equations are compared with published equations; significant differences may be due to species responses to regional or site differences. Proportional contributions of component biomass in aspen change in ways related to tree size and stand development. Spruce maintains comparatively constant proportions with size, but shows changes corresponding to site. This suggests greater morphological plasticity of aspen and significance for spruce of nutrient conditions.

Woods, K. D.↗

Biological/Horticultural Internship Final Report

A study was conducted to determine water use requirements of genetically modified (GMO) dwarf plum. GMO plum and unmodified standard plum plants were grown in a controlled environment chamber under varying CO2 concentrations (400 ppm, 1500 ppm, and 5000 ppm). Pepper plants were also grown in the chamber for additional comparison. Leaf stomatal conductance, biomass accumulation, soil moisture and pot weights were measured; Stomatal conductance of GMO plum and pepper plants decreased at sustained elevated CO2 concentrations. The stomatal conductance rates of the standard plums, however, increased at sustained elevated CO2 concentrations. Further data analysis (statistical analysis, biomass, soil moisture and pot weight measurements) is ongoing and required to gain better understanding of the data. An additional proof-of-concept study was undertaken to determine the feasibility of grafting unmodified standard plum scions onto genetically modified rootstocks as a propagation method. Bud grafts were performed on three GMO plum rootstocks: NASA-5, NASA-10, and NASA-11. All of the standard plum buds grafted onto NASA-5 and NASA-10 rootstocks began growing, indicating that this grafting method is highly successful for the formation of a graft union and initial bud growth. However, bud growth during stem elongation was curtailed on several grafts due to a combination of nutritional deficiency and physical damage/obstruction of the grafted tissues. Bud growth on the NASA-5 rootstock occurred sooner than in grafts on the NASA-10 rootstock, while only one bud graft has shown growth on the NASA-11 rootstock thus far. These marked differences in the onset of bud growth suggest genotypic differences between the rootstocks may affect bud graft vigor. Mature standard plum scions grown on the NASA-5 rootstock appeared to retain most or all of the physical characteristics of the standard plum donor plant.

GMO↗

(abstract) Sensitivity to Forest Biomass Based on Analysis of Scattering Mechanism

The estimation of forest biomass on a global scale is an important input to global climate and carbon cycle models. Remote sensing using synthetic aperture radar offers a means to obtain such a data set. Although it has been clear for some time that radar signals penetrate forest canopies, only recently has it been demonstrated that these signals are indeed sensitive to biomass. Inasmuch as the majority of a forest's biomass is in the trunks, it is important that the radar is sensing the trunk biomass as opposed to the branch or leaf biomass. In this study we use polarimetric AIRSAR P- and L-band data from a variety of forests to determine if the radar penetrates to the trunk by examining the scattering mechanism as determined using van Zyl's scattering interaction model, and the levels at which saturation occurs with respect to sensitivity of radar backscatter to total biomass. In particular, the added sensitivity of P-band relative to L-band is addressed. Results using data from the Duke Forest in North Carolina, the Bonanza Creek Experimental Forest in Alaska, Shasta Forest in California, the Black Forest in Germany, the temporate/boreal transition forests in northern Michigan, and coastal forests along the Oregon Transect will be presented.

forest canopy biomass radar scattering mechanism↗

Resolution of grass canopy biomass classes

Analysis of variance methods has been applied to in situ grassland spectral reflectance data in order to determine the classes or levels of total wet biomass that can be resolved spectrally by a single narrow band measurement. Ground-truth clipping of blue grama grass plots was performed immediately following spectral reflectance measurements at 91 wavelength intervals which were 0.005 microns apart over the spectral range from 0.350 to 0.800 microns. It was found that the photographic infrared region of 0.750 to 0.800 microns could be used to distinguish three classes or levels of total wet biomass. Four or five classes, particularly at higher biomass levels, could not be distinguished by this technique.

Tucker, C. J.↗

Biomass production chamber air analysis of wheat study (BWT931)

NASA's Controlled Ecological Life Support System (CELSS) biomass production chamber at John F. Kennedy Space Center provides a test bed for bioregenerative studies using plants to provide food, oxygen, carbon dioxide removal, and potable water to humans during long term space travel. Growing plants in enclosed environments has brought about concerns regarding the level of volatile organic compounds (VOC's) emitted from plants and the construction materials that make up the plant growth chambers. In such closed systems, the potential exists for some VOC's to reach toxic levels and lead to poor plant growth, plant death, or health problems for human inhabitants. This study characterized the air in an enclosed environment in which wheat cv. Yocora Rojo was grown. Ninty-four whole air samples were analyzed by gas chromatography/mass spectrometry throughout the eighty-four day planting. VOC emissions from plants and materials were characterized and quantified.

Batten, J. H.↗

Biomass Harmonization and SAR Analysis with the Multi-mission Algorithm and Analysis Platform (MAAP)

The Multi‐mission Algorithm and Analysis Platform (MAAP) is a collaborative effort between NASA and the European Space Agency (ESA) to support above ground biomass (AGB) research in an open science framework. MAAP brings together relevant data, algorithms, and computing capabilities in a common cloud environment to address the challenges of sharing and processing data from field, airborne and satellite measurements. MAAP was publicly released in October 2021, providing computing capabilities co-located with the data, a collaborative coding and analysis environment, and a set of interoperable tools and algorithms developed to support the estimation and visualization of data. MAAP has allowed scientists from both North America and Europe to collaborate on the generation and analysis/visualization of data derived from multiple, discipline-adjacent missions in an open, collaborative environment that has reached beyond traditional scientific investigation. MAAP has been used to support multiple scientific activities. To date, existing LiDAR data from multiple platforms has been calibrated with field measurements and combined for more comprehensive and accurate estimates of above ground biomass AGB; these LiDAR platforms include airborne (e.g. LVIS), the International Space Station (NASA’s Global Ecosystem Dynamics Investigation (GEDI), and satellites (e.g. ICESat-2). The current challenge is to effectively and seamlessly combine the aforementioned LiDAR-based data with new data sources such as P-band RADAR from ESA’s upcoming BIOMASS mission, existing ESA Sentinel-1 C-band SAR, and the 30 PB/yr of high cadence global coverage L-band SAR data from the upcoming NASA-ISRO SAR (NISAR) mission. Recent analysis using MAAP merged ICESat-2 and optical data (Harmonized Landsat Sentinel) produced the most comprehensively precise estimate of boreal-wide AGB to date. Another effort using MAAP is the production and open distribution of global comparisons of AGB map estimates, including from ICESat-2 and GEDI, to bolster stakeholder uptake for policy applications. These map estimates will feed into the Intergovernmental Panel on Climate Change (IPCC) database, likely aiding the next Global Carbon Stocktake of the UNFCCC. Furthermore, the biomass retrieval intercomparison exercise BRIX-2 could benefit from the MAAP providing standardized test cases (based on airborne campaign and spaceborne data) allowing the community to develop and apply retrieval algorithms based on these test cases, while forthcoming SAR data training curricula could also use the MAAP as a teaching and learning platform. The MAAP is meeting the challenges inherent in international, open science collaboration and large scale computing with a platform that is entirely open source and cloud native, using open standards for data access, manipulation, protocols, and formats. The MAAP data system consists of a dedicated data store whose data is indexed in an online catalog conforming to established metadata, application programmatic interfaces (APIs), and service interface standards, using an implementation of the open sourced NASA Common Metadata Repository. Federation of user identities allows users from either NASA or ESA to access and consume services from the other using a unified metadata catalog for the data utilized across the ESA and NASA MAAP platforms. Similarly, we are exploring how to increase interoperability to achieve a common approach to packaging, orchestrating and executing algorithms, with interoperable access to data for subsetting, fast browse, and cloud-optimized access, all using interoperable standards such as those from the Open Geospatial Consortium (OGC). Designed for interoperability, ESA and NASA utilize a common architecture for the software platform. It provides a cloud-based algorithm development environment (ADE) that enables scientists to develop algorithms collaboratively with access to the MAAP data catalog as well as other data archives. MAAP provides an Eclipse Che-based ADE supporting both Python and R languages, popular in this biomass community. Algorithms developed and containerized within the ADE can be deployed to run to thousands of computational nodes in the MAAP’s data processing system (DPS), dramatically speeding up processing and giving scientists a rapid, iterative turnaround of results. NASA’s implementation of the DPS is based on the Hybrid Science Data System (HySDS) framework, used by NASA flight projects to produce Earth science standard products.

cloud computing↗

Limitations to Biomass Estimation for FAV Using NDVI Analysis of Satellite Acquisitions

The distribution and standing biomass (mass per unit area) of Floating Aquatic Vegetation (FAV)provide assessment metrics for productivity of vegetative communities. Remote sensing acquisition data has been used to estimate standing biomass in various ecosystems using vegetation indices, particularly the normalized difference vegetation index (NDVI), comparing the relative strength of radiation absorbance and reflectance of vegetation in specific wavebands. Obstacles to estimating vegetation biomass using NDVI reported are related to diversity of the vegetation community and high-density saturation. We evaluate the potential for using NDVI derived estimates for FAV biomass in the California Delta by focusing on patches of predominantly single species and compare biomass estimates for specific patches with measurement of total biomass and partitioning within the vegetation canopy. Using Landsat satellite acquisitions, biomass estimates are made for individual pixels and vegetation samples were collected from those same pixels. Focus on patches of predominantly single FAV species resulted in successful estimation of standing biomass beyond that previously reported in other ecosystems. A saturation response for the estimations was observed, however, with a much higher threshold high than previously reported for diverse population aquatic ecosystems. We discuss the likely cause for the saturation phenomenon and potential improvement utilizing altered spectral indices possible with higher spectral resolution from satellites carrying higher waveband multispectral and hyperspectral instruments.

Biomass↗

Grown organic matter as a fuel raw material resource

An extensive search was made on biomass production from the standpoint of climatic zones, water, nutrients, costs and energy requirements for many species. No exotic species were uncovered that gave hope for a bonanza of biomass production under culture, location, and management markedly different from those of existing agricultural concepts. A simulation analysis of biomass production was carried out for six species using conventional production methods, including their production costs and energy requirements. These estimates were compared with data on food, fiber, and feed production. The alternative possibility of using residues from food, feed, or lumber was evaluated. It was concluded that great doubt must be cast on the feasibility of producing grown organic matter for fuel, in competition with food, feed, or fiber. The feasibility of collecting residues may be nearer, but the competition for the residues for return to the soil or cellulosic production is formidable.

Roller, W. L.↗

Benchmark data on the separability among crops in the southern San Joaquin Valley of California

Landsat MSS data were input to a discriminant analysis of 21 crops on each of eight dates in 1979 using a total of 4,142 fields in southern Fresno County, California. The 21 crops, which together account for over 70 percent of the agricultural acreage in the southern San Joaquin Valley, were analyzed to quantify the spectral separability, defined as omission error, between all pairs of crops. On each date the fields were segregated into six groups based on the mean value of the MSS7/MSS5 ratio, which is correlated with green biomass. Discriminant analysis was run on each group on each date. The resulting contingency tables offer information that can be profitably used in conjunction with crop calendars to pick the best dates for a classification. The tables show expected percent correct classification and error rates for all the crops. The patterns in the contingency tables show that the percent correct classification for crops generally increases with the amount of greenness in the fields being classified. However, there are exceptions to this general rule, notably grain.

Morse, A.↗

Use of remote sensing for land use policy formulation

The use of remotely sensed data for eliminating abuses and mismanagement of land and water resources in Michigan is discussed. Applications discussed include inventory of mosquito breeding sites; analysis of biomass in old field ecosystems used for wastewater recycling; areas for agricultural use; and preservation of the Grand Mere Dune environment. Services to users are described and contact activities reported.

Boylan, M.↗

Microbial biomass and productivity in seagrass beds

Different methods for measuring the rates of processes mediated by bacteria in sediments and the rates of bacterial cell production have been compared. In addition, net production of the seagrass Zostera capricorni and bacterial production have been compared and some interrelationships with the nitrogen cycle discussed. Seagrass productivity was estimated by measuring the plastochrone interval using a leaf stapling technique. The average productivity over four seasons was 1.28 +/- 0.28 g C m-2 day-1 (mean +/- standard deviation, n = 4). Bacterial productivity was measured five times throughout a year using the rate of tritiated thymidine incorporated into DNA. Average values were 33 +/- 12 mg C m-2 day-1 for sediment and 23 +/- 4 for water column (n = 5). Spatial variability between samples was greater than seasonal variation for both seagrass productivity and bacterial productivity. On one occasion, bacterial productivity was measured using the rate of 32P incorporated into phospholipid. The values were comparable to those obtained with tritiated thymidine. The rate of sulfate reduction was 10 mmol SO4(-2) m-2 day-1. The rate of methanogenesis was low, being 5.6 mg CH4 produced m-2 day-1. A comparison of C flux measured using rates of sulfate reduction and DNA synthesis indicated that anaerobic processes were predominant in these sediments. An analysis of microbial biomass and community structure, using techniques of phospholipid analysis, showed that bacteria were predominant members of the microbial biomass and that of these, strictly anaerobic bacteria were the main components. Ammonia concentration in interstitial water varied from 23 to 71 micromoles. Estimates of the amount of ammonia required by seagrass showed that the ammonia would turn over about once per day. Rapid recycling of nitrogen by bacteria and bacterial grazers is probably important.

NASA Program CELSS↗

Bioreactor Development for CO2-Based In Situ Resource Utilization Manufacturing

Sustainable long-duration manned missions on both the Moon and Mars will require in situ resource utilization (ISRU). Carbon dioxide (CO2) has great potential as a harvestable resource, making up 95% of the atmosphere on Mars and being produced as respiratory waste in spacecraft and future planetary habitats. Through ISRU, biomanufacturing has the capability to produce a near limitless array of products from local space resources. Here, a CO2-based ISRU recombinant protein producing bioreactor and associated biomanufacturing organisms were designed to produce a highly stable carbonic anhydrase (CA). Candidate organisms were selected by growth characterization on acetate and formic acid, carbon substrates that are synthesized via electrochemical conversion of CO2. To improve growth on the CO2 producing substrate formic acid and for direct integration of ISRU CO2, a synthetic Calvin-Benson-Bassam cycle was designed for use in Escherichia coli. Multiplex genetic modification in E. coli was facilitated by a tailored CRISPR/Cas9 and λ red recombineering two-vector system. For expression of CA, a blue light regulated T7 promoter was employed for dynamic and small molecule free induction. Efficient bioproduction through a fed-batch exponential feeding strategy was determined via mass balance analysis from ISRU substrates to biomass and CA yield. Flux balance analysis was used to model ISRU substrate metabolism and metabolic pathway engineering in candidate organisms under cultivation strategy conditions for both metabolism reconstruction and pathway design optimization. Finally, a small-scale, disposable bag bioreactor for use in the NASA Bioculture System infrastructure was designed to enable CO2-based CA biomanufacturing in reduced-gravity environments.

biomanufacturing↗

Physical and Optical Characteristics of the October 2010 Haze Event Over Singapore: A Photometric and Lidar Analysis

Trans-boundary biomass burning smoke episodes have increased dramatically during the past 20-30 years and have become an annual phenomenon in the South‐East‐Asia region. On 15th October 2010, elevated levels of fire activity were detected by remote sensing satellites (e.g. MODIS). On the same date, measurements of fine particulate matter (PM2.5) at Singapore and Malaysia found high levels of fine mode particles in the local environment. All these observations were indicative of the initial onset of a smoke episode that lasted for several days. In this work, we investigate the temporal evolution of this smoke episode by analyzing the physical and optical properties of smoke particles with the aid of an AERONET Sun photometer, an MPLNet micropulse lidar, and surface PM2.5 measurements. Elevated levels of fire activity coupled with high aerosol optical depth and PM2.5 were observed over a period of nine days. Increased variability of parameters such as aerosol optical depth, Angstrom exponent number and its fine mode equivalents all indicated high levels of fine particulate presence in the atmosphere. Smoke particle growth due to aging, coagulation and condensation mechanisms was detected during the afternoons and over several days. Retrieved lidar ratios were compatible with the presence of fine particulate within the boundary/aerosol layer. Moreover, retrieved particle size distribution as well as single scattering albedo indicated the prevalence of the fine mode particulate regime as well as particles showing enhanced levels of absorption respectively.

Air quality↗

Analysis of proteins involved in biodegradation of crop biomass

The biodegradation of crop biomass for re-use in crop production is part of the bioregenerative life support concept proposed by the National Aeronautics and Space Administration (NASA) for long duration, manned space exploration. The current research was conducted in the laboratory to evaluate the use of electrophoretic analysis as a means of rapidly assaying for constitutive and induced proteins associated with the bacterial degradation of crop residue. The proteins involved in crop biomass biodegradation are either constitutive or induced. As a result, effluent and cultures were examined to investigate the potential of using electrophoretic techniques as a means of monitoring the biodegradation process. Protein concentration for optimum banding patterns was determined using the Bio-Rad Protein Assay kit. Four bacterial soil isolates were obtained from the G.W. Carver research Farm at Tuskegee University and used in the decomposition of components of plant biomass. The culture, WDSt3A was inoculated into 500 mL of either Tryptic Soy Broth or Nutrient Broth. Incubation, with shaking of each flask was for 96 hours at 30 C. The cultures consistently gave unique banding patterns under denaturing protein electrophoresis conditions, The associated extracellular enzymes also yielded characteristic banding patterns over a 14-day period, when native electrophoresis techniques were used to examine effluent from batch culture bioreactors. The current study evaluated sample preparation and staining protocols to determine the ease of use, reproducibility and reliability, as well as the potential for automation.

Crawford, Kamau↗

Quantification of Aerosol Type, and Sources of Aerosols Over the Indo- Gangetic Plain

Differences and similarities in aerosol characteristics, for the first time, over two environmentally distinct locations in Indo-Gangetic plain (IGP) e Kanpur (KPR) (urban location) and Gandhi College (GC) (rural site) are examined. Aerosol optical depths (AODs) exhibit pronounced seasonal variability with higher values during winter and premonsoon. Aerosol fine mode fraction (FMF) and Ångstrom exponent (a) are higher over GC than KPR indicating relatively higher fine mode aerosol concentration over GC. Higher FMF over GC is attributed to local biomass burning activities. Analysis of AOD spectra revealed that aerosol size distribution is dominated by wide range of fine mode fractions or mixture of modes during winter and postmonsoon, while during premonsoon and monsoon coarse mode aerosols are more abundant. Single scattering albedo (SSA) is lower over GC than KPR. SSA spectra reveals the abundance of fine mode (coarse mode) absorbing (scattering) aerosols during winter and postmonsoon (premonsoon and monsoon). Spectral SSA features reveal that OC contribution to enhanced absorption is negligible. Analysis shows that absorbing aerosols can be classified as Mostly Black Carbon (BC), and Mixed BC and Dust over IGP. Mixed BC and dust is always higher over KPR, while Mostly BC is higher over GC throughout the year. The amount of long range transported dust exhibits a gradient between KPR (higher) and GC (lower). Results on seasonally varying aerosol types, and absorbing aerosol types and their gradients over an aerosol hotspot are important to tune models and to reduce the uncertainty in radiative and climate impact of aerosols.

Organic Carbon↗

Earth science research

The analysis of ground-truth data from the boreal forest plots in the Superior National Forest, Minnesota, was completed. Development of statistical methods was completed for dimension analysis (equations to estimate the biomass of trees from measurements of diameter and height). The dimension-analysis equations were applied to the data obtained from ground-truth plots, to estimate the biomass. Classification and analyses of remote sensing images of the Superior National Forest were done as a test of the technique to determine forest biomass and ecological state by remote sensing. Data was archived on diskette and tape and transferred to UCSB to be used in subsequent research.

Botkin, Daniel B.↗

Analysis of coastal upwelling and the production of a biomass

The coastal upwelling index derived from weather data is input to a set of coupled differential equations that describe the production of a biomass. The curl of the wind stress vector is discussed in the context of the physical extent of the upwelling structure. An analogy between temperature and biomass concentration in the upwelled coastal water is derived and the relationship is quantified. The use of remote satellite or airborne sensing to obtain biomass rate production coefficients is considered.

Howe, J. T.↗