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At least 19 records

Chisel: reliability- and accuracy-aware optimization of approximate computational kernels

The accuracy of an approximate computation is the distance between the result that the computation produces and the corresponding fully accurate result. The reliability of the computation is the probability that it will produce an acceptably accurate result. Emerging approximate hardware platforms provide approximate operations that, in return for reduced energy consumption and/or increased performance, exhibit reduced reliability and/or accuracy. We present Chisel, a system for reliability- and accuracy-aware optimization of approximate computational kernels that run on approximate hardware platforms. Given a combined reliability and/or accuracy specification, Chisel automatically selects approximate kernel operations to synthesize an approximate computation that minimizes energy consumption while satisfying its reliability and accuracy specification. We evaluate Chisel on five applications from the image processing, scientific computing, and financial analysis domains. The experimental results show that our implemented optimization algorithm enables Chisel to optimize our set of benchmark kernels to obtain energy savings from 8.7% to 19.8% compared to the fully reliable kernel implementations while preserving important reliability guarantees.

97 MATHEMATICS AND COMPUTING↗

Objective analysis of impressed chisel toolmarks

Historical and recent challenges to the practice of comparative forensic examination have created a driving force for the formation of objective methods for toolmark identification. In this study, fifty sequentially manufactured chisels were used to create impression toolmarks in lead (500 toolmarks total). An algorithm previously used to statistically separate known matching and nonmatching striated screwdriver marks and quasi-striated plier marks was used to evaluate the chisel marks. Impression toolmarks, a more complex form of toolmark, pose a more difficult test for the algorithm that was originally designed for striated toolmarks. Lastly, results show in this instance that the algorithm can separate matching and nonmatching impression marks, providing further validation of the assumption that toolmarks are identifiably unique.

47 OTHER INSTRUMENTATION↗

PCA -BASED COMPRESSOR HARDWARE DESIGN GENERATOR IN CHISEL

SF-25-077 This repository includes a hardware generator written in Chisel that generates lossy compression hardware designs based on principal component analysis (PCA), along with a flexible testbench. It also includes a Python tool for evaluating the accuracy loss of integer quantization.

Kazutomo, Yoshi [Argonne National Laboratory (ANL)↗

Constructing Hardware in a Scale Embedded Language

Chisel is a new open-source hardware construction language developed at UC Berkeley that supports advanced hardware design using highly parameterized generators and layered domain-specific hardware languages. Chisel is embedded in the Scala programming language, which raises the level of hardware design abstraction by providing concepts including object orientation, functional programming, parameterized types, and type inference. From the same source, Chisel can generate a high-speed C++-based cycle-accurate software simulator, or low-level Verilog designed to pass on to standard ASIC or FPGA tools for synthesis and place and route.

Bachan, John↗

BaseBuddy v1

The software "BaseBuddy" (basebuddy.lbl.gov) is a user-friendly web app designed for codon optimization of heterologous genes. Codon optimization is a widely used technique to enhance the expression levels of non-native genes. Our app is built on the DNA Chisel Python library (Zulkower and Rosser, 2020), which offers highly customizable and transparent gene optimization. Unlike DNA Chisel, which is a command-line interface software with numerous optional functions, our web app simplifies the process for users. Additionally, while DNA Chisel relies on the outdated Kazusa codon usage database, our app introduces the option to utilize the most recent version of the CoCoPUTs database (Athey et al., 2017). By incorporating CoCoPUTs, we also expand the range of target organisms and maintain up-to-date sequencing data for more accurate codon optimization results.

Schmidt, Matthias↗

Constructing Hardware in a Scale Embedded Language

Chisel is a new open-source hardware construction language developed at UC Berkeley that supports advanced hardware design using highly parameterized generators and layered domain-specific hardware languages. Chisel is embedded in the Scala programming language, which raises the level of hardware design abstraction by providing concepts including object orientation, functional programming, parameterized types, and type inference. From the same source, Chisel can generate a high-speed C++-based cycle-accurate software simulator, or low-level Verilog designed to pass on to standard ASIC or FPGA tools for synthesis and place and route.

Bachan, John↗

Corn stover harvest reduces soil CO 2 fluxes but increases overall C losses

Abstract Harvesting corn ( Zea mays L.) stover for use as bioenergy feedstock may provide short‐term economic benefits and perhaps improve grain yield in continuous corn systems, but excessive stover removal may lead to long‐term depletion of soil C stocks. To better quantify the impacts of stover harvest on the soil C balance, we investigated CO 2 fluxes under three harvest treatments (none, moderate, and high) in three continuous corn systems: (a) no tillage and no biochar applications, (b) chisel plowing with biochar amendments, and (c) chisel plowing without biochar amendments were quantified. We sampled static chambers 14, 13, and 15 times in 2010, 2011, and 2012, respectively, and the measurements were used to calibrate the Agricultural Production Systems sIMulator model. Although CO 2 ‐C emissions did not differ among the three systems, both moderate (approximately 30%) and high (approximately 60%) stover removal rates reduced simulated CO 2 ‐C emissions by nearly 10% and more than 22%, respectively. Despite these reductions in CO 2 flux, the sum of CO 2 ‐C and stover C exceeded CO 2 ‐C losses in those plots without stover removal. This finding suggested soil C depletion was occurring for the soil and crop management practices used, even though depletion was not evident after 3 years. Application of biochar increased soil C levels, suggesting it may be able to offset some C losses. We conclude that for sustainable, highly productive agroecosystems that include stover harvest, all agronomic practices must be optimized to minimize C losses and maintain soil quality.

54 ENVIRONMENTAL SCIENCES↗

Verilator Testbench Environment (VTE) v0.1

VTE is a library that allows fast and simple generation of C++ testers for modules written in Chisel and build an efficient interface to existing C++ based simulators. It contains Scala-based interface and C++ testbench class. Scala interface interacts with Firtl Interpreter and generates a basic set of C++ testbench files. These files contain the list of the Device Under Test (DUT) input-output ports as well as their parameters. C++ testbench provides functionalities similar to the Chisel PeekPokeTester, such as poke, expect, step functions. As a backend it uses Verilator.

Fatollahi-Fard, Farzad↗

Ten–Year Assessment Encourages No–Till for Corn Grain and Stover Harvest

Developing a bio-economy by harvesting crop residues from highly productive corn (Zea mays L.) cropping systems requires science-based management decisions to maintain or enhance grain yield and soil, water, and air resources. Which tillage and stover harvest practices are best for accomplishing these goals? Continuous corn grain yield response to either no-till or chisel plowing with two stover harvest rates (3.4 or 5.1 Mg ha -1 yr -1 ) was evaluated for 10 yr in central Iowa. Each tillage and stover removal combination was replicated four times. Year-to-year variation affected grain yield more than tillage practice (0.2 Mg ha -1 ) or stover removal (0.1 Mg ha -1 ). Grain yields were not statistically different (p = 0.33) between tillage systems. Including machinery costs made return on investment for chisel plow and no-till equivalent even though no-till yields were numerically lower. Net stover income per megagram was US $\$2$ to $\$4$ greater at the 3.4 versus 5.1 Mg ha -1 harvest rate because of more efficient harvesting. Among the four practices, no-till with 3.4 Mg ha -1 stover harvest met multiple goals, including providing acceptable corn grain yields, positive net income per megagram stover, and sufficient residues to protect the soil.

54 ENVIRONMENTAL SCIENCES↗

Stover Harvest did not Change Nitrous Oxide Emissions in Two Minnesota Fields

Corn (Zea mays L.) is grown across vast acreages producing massive quantities of stover making corn a desirable cellulosic bioenergy feedstock. Nitrous oxide (N 2 O) is a potent greenhouse gas (GHG) so small changes in direct soil N 2 O emissions may have substantial influence on global warming potential (GWP) from the agricultural sector. Harvesting stover alters soil properties such as soil moisture, oxygen availability, temperature, and substrate availability (C and N). Thus, harvesting stover might reduce soil N 2 O emissions by reducing substrate and by warming and drying the soil. The goal of the study was to determine how harvesting corn stover altered soil N 2 O emissions. Therefore, soil N 2 O emissions were measured for four crop-years (planting to planting) in two independent studies, one in a field managed without tillage (NT1995) and the other was in a field tilled annually with a chisel plow (Chisel). In this study, each field was in a corn–soybean (Glycine max L. [Merr.]) rotation, with (i) corn grain (Grain) only, (ii) grain plus about 50% of the stover harvested (Grain+Moderate), and (iii) grain plus harvesting as much stover as possible (Grain+Aggressive) treatments. Cumulative soil N 2 O emissions did not differ among treatments in either field during any of the crop-years monitored. Flux events occurred corresponding to fertilizer applications and to spring freeze-thaw events. Cumulative fertilizer stimulated emissions tended to be greater for corn than soybean because of N-fertilizer application. These results are valuable to modelers for enhancing estimates of the N 2 O component of the stover management C-footprint.

54 ENVIRONMENTAL SCIENCES↗

Corn Stover Harvest, Tillage, and Cover Crop Effects on Soil Health Indicators

Monitoring soil health indicators (SHI) will help ensure that corn (Zea mays L.) stover harvest is sustainable. This study examines SHI changes after 5 yr of growing continuous corn with either chisel plow or no-tillage practices and harvesting 0, ~35, or ~60% of the stover. Two no-tillage treatments with a cereal rye (Secale cereale L.) cover crop and stover harvest rates of ~35 or ~60% were evaluated. All eight treatments were replicated four times in a randomized complete block design at an 11-ha site in Boone County, IA. Soil samples were collected following grain and stover harvest from 0- to 5- and 5- to 15-cm depth increments. Particulate organic matter C (POM-C) decreased when stover was removed or the soil was chisel plowed. No-till with 0% stover removal had 10 mg g –1 POM-C in the 0- to 5-cm soil layer, which was 1.9-fold higher than in other treatments. Potentially mineralizable N (PMN) was greater under cover crop treatments. Average PMN values were 56.9 and 45.5 µg g –1 PMN for no-till with cereal rye at 0- to 5- and 5- to 15-cm depths, respectively, compared with 17.5 and -3.7 µg g –1 PMN for the same no-till treatments without cereal rye. Other soil properties did not respond to increasing levels of stover removal. At this location and at the studied removal rates, 5 yr of harvesting corn stover did not decrease soil health, but POM-C data suggest that changes may be occurring. Long-term monitoring should continue to assess corn stover harvest sustainability.

54 ENVIRONMENTAL SCIENCES↗

Imaging Electrons in Two Dimensional Materials (Final report)

Two-dimensional (2D) materials have extraordinary characteristics that offer promising new approaches for science and technology. Electrons in graphene can move ballistically through a sheet, even though it is only a single atom thick. And transition metal dichalcogenide materials can be cleaved into 2D flakes of all types – metals, semiconductors, insulators, magnetic materials, and superconductors. To benefit from these discoveries, the science needs to be understood to transform 2D materials into useful new devices and systems. The evolution in time of atomic scale graphene structures has been studied in time with a transmission electron microscope (TEM), and ballistic transport of electrons in graphene was been imaged using a cooled scanning probe microscope (SPM), as well as electron motion in MoS 2 . Graphene is only one atom thick but is extremely strong, creating the opportunity to fabricate atomic scale structures in the lateral direction. Using an atomic resolution TEM, a suspended sheet of graphene can be shaped by a Si impurity atom on its surface that acts like a chisel to open up apertures, one atom at a time. The electrons in the TEM provide both the chiseling energy and the ability to image the results. Electrons and holes in graphene form a new type of electronic system with conical conduction and valence bands that meet at the Dirac point, with no energy gap. For moderate densities, the carriers form a Fermi liquid with ballistic transport over micron-scale distances. Using a cooled SPM the cyclotron orbit of electrons in graphene has been imaged. In the magnetic focusing regime, electrons leaving a point contact circle around and leave from a second point contact when the cyclotron diameter is equal to the contact spacing. The paths of electrons are focused - they enter at different angles but converge again at the exiting contact. When the SPM tip knocks an electron out of its orbit, an imaging signal is created. The ballistic motion of carriers in graphene opens the way for ballistic devices that manipulate beams of electrons and holes. Our collaborator Gil-Ho Lee, in Philip Kim's group, created a collimating contact by placing zig-zag absorbers on either side of entering electrons. Our cooled SPM was used to image the electron beam and determine its 9-degree halfwidth. By changing the gate voltage, a collimated beam of holes was also created, opening the way for colliding beam experiments. Coherent beams of carriers are desirable for quantum information processing. Via Andreev reflection, superconducting contacts can covert Cooper pairs in a superconductor to an ingoing and outgoing electrons and holes. Using our cooled SPM, Andreev reflection was imaged from a superconducting contact on a graphene device. Magnetic focusing was used to create an incoming beam of electrons and an outgoing beam of holes, detected by a third point contact. The images show a clear transition from normal reflection above the superconducting transition temperature to Andreev reflection as the device is cooled. Transition metal dichalcogenides offer a wide array of materials that can be exfoliated into ultrathin 2D sheets. A cooled SPM can be used to detect quantum dots as well as to image electron flow. The tip charge capacitively couples to electrons on the dot, acting as a gate to tune the dot conductance. Coulomb blockade peaks appear as a bullseye pattern in an SPM image as the tip is raster scanned above the dot. This approach was used to detect quantum dots in a MoS 2 channel as the carrier density was reduced and electrons pooled in low energy points. Through our DOE supported research, cooled SPM imaging has proven to be a very useful tool to uncover the motion of electrons and holes in the new quantum materials graphene and MoS 2 .

36 MATERIALS SCIENCE↗

Archaeometallurgical investigation of the iron anchor from the Tantura F shipwreck

The Tantura F shipwreck was a coaster or a fishing vessel about 15.7 m long, discovered in the Dor/Tantura lagoon, Israel in 1995. It was dated to between the mid-7th and the end of the 8th centuries CE. Among the finds excavated were two T-shaped type iron anchors. Of the two anchors, one (anchor A) was thoroughly studied by archaeometallurgical methods in order to identify forge-welding lines, to determine the welding quality and to understand the manufacturing technology. The examinations included X-ray radiography, XRF analysis, optical microscopy, SEM/EDS observation and analysis, OES analysis and microhardness tests. The investigation included characterization of the composition, microstructure, thermal treatments, forge-welding junctions and slag analysis. The results revealed a heterogeneous microstructure, rich in glassy, fayalite and wüstite slag. Iron based phases included ferrite, pearlite, cementite and Widmanstätten plates, all typical to wrought iron. The forge-welds of Anchor A were located. Each arm was made of one piece, weighing about 2.5–3 kg and the shank was made of a few 1.5–2 kg pieces. The second anchor (anchor B) was only briefly examined visually and with a few radiographs, which support the results from anchor A. The research results revealed significant information about T-shaped anchors and their manufacturing process, including hot-working processes without any additional heat treatments, and folding techniques. The microstructure was similar to other ancient simple tools such as saws, sickles, axes and mortise chisels, and though the technology to make complicated structures and objects, such as swords, existed at that time, the anchors did not require this sophistication; thus simpler techniques were used, presumably because they were more cost-effective. - Highlights: ► Tantura F was a coaster dated to mid-7th–end-8th centuries. ► Two iron anchors were discovered at the Tantura F shipwreck-site. ► Anchor A was manufactured from heterogeneous wrought iron blooms. ► Forge-welding lines were detected using archaeometallurgical methods.

36 MATERIALS SCIENCE↗

Crystal Structures, Surface Stability, and Water Adsorption Energies of La-Bastnäsite via Density Functional Theory and Experimental Studies

Bastnasite is a fluoro-carbonate mineral that is the largest source of rare earth elements such as Y, La, and Ce. With increasing demand for REE in many emerging technologies, there is an urgent need for improving the efficiency of ore beneficiation by froth flotation. In order to design improved flotation agents that can selectively bind to the mineral surface, a fundamental understanding of the bulk and surface properties of bastnäsite is essential. Density functional theory calculations using the PBEsol exchange correlation functional and the DFT-D3 dispersion correction reveal that the most stable form of La-bastnäsite is isomorphic to the structure of Ce-bastnäsite belonging to the $P\bar{62}c$ space group, while the Inorganic Crystal Structure Database structure in the $P\bar{62}m$ space group is ca. 11.3 kJ/mol higher in energy per LaFCO 3 formula unit. We report powder X-ray diffraction measurements on synthetic of La-bastnäsite to support these theoretical findings. Six different surfaces are studied by DFT, namely [$10\bar{10}$], [0001], [$10\bar{11}$], [$10\bar{12}$], [$10\bar{14}$] and [$11\bar{22}$]. Among these, the [$10\bar{10}$] surface is the most stable with a surface energy of 0.73 J/m 2 in vacuum and 0.45 J/m 2 in aqueous solution. We predicted the shape of a La-bastnäsite nanoparticle via thermodynamic Wulff construction to be a hexagonal prism with [$10\bar{10}$] and [0001] facets, chiseled at its ends by the [$10\bar{11}$] and [$10\bar{12}$] facets. The average surface energy of the nanoparticle in the gas phase is estimated to be 0.86 J/m 2 , in good agreement with a value of 1.11 J/m 2 measured by calorimetry. The calculated adsorption energy of a water molecule varies widely with the surface plane and specific adsorption sites on a given surface. Moreover, the first layer of water molecules is predicted to adsorb strongly on the La-bastnäsite surface, in agreement with water adsorption calorimetry experiments. Our work provides an important step towards a detailed atomistic understanding of the bastnäsite water interface and designing collector molecules that can bind specifically to bastnäsite.

36 MATERIALS SCIENCE↗

Selective posttranslational inhibition of Ca V β 1 -associated voltage-dependent calcium channels with a functionalized nanobody

Ca 2+ influx through high-voltage-activated calcium channels (HVACCs) controls diverse cellular functions. A critical feature enabling a singular signal, Ca 2+ influx, to mediate disparate functions is diversity of HVACC pore-forming α1 and auxiliary Ca V β 1 –Ca V β 4 subunits. Selective Ca V α 1 blockers have enabled deciphering their unique physiological roles. By contrast, the capacity to post-translationally inhibit HVACCs based on Ca V β isoform is non-existent. Conventional gene knockout/shRNA approaches do not adequately address this deficit owing to subunit reshuffling and partially overlapping functions of Ca V β isoforms. Here, we identify a nanobody (nb.E8) that selectively binds Ca V β 1 SH3 domain and inhibits Ca V β 1 -associated HVACCs by reducing channel surface density, decreasing open probability, and speeding inactivation. Functionalizing nb.E8 with Nedd4L HECT domain yielded Chisel-1 which eliminated current through Ca V β 1 -reconstituted Ca V 1/Ca V 2 and native Ca V 1.1 channels in skeletal muscle, strongly suppressed depolarization-evoked Ca 2+ influx and excitation-transcription coupling in hippocampal neurons, but was inert against Ca V β 2 -associated Ca V 1.2 in cardiomyocytes. The results introduce an original method for probing distinctive functions of ion channel auxiliary subunit isoforms, reveal additional dimensions of Ca V β 1 signaling in neurons, and describe a genetically-encoded HVACC inhibitor with unique properties.

60 APPLIED LIFE SCIENCES↗

Design and scale-up of a semi-industrial downer-reactor for the rounding of irregular polymer particles

The recent development of rapid prototyping technologies towards additive manufacturing reveals some major drawbacks of processes such as laser beam melting (LBM). This contribution focuses on the lack of suitable polymer material with a fine particle size and good flowability. Polymer particles obtained by a wet grinding process 1 are treated in a heated downer reactor. This treatment changes the particles’ morphology from a chiselled state towards a spherical form by surface tension forces in a molten state 2 and leads to an improved flowability. To reach the required amount of rounded polymer powder, a downer reactor in semi-industrial scale has been established and will be characterized in this article. For the purpose of particle rounding it is necessary to avoid contact of molten particles with each other and with the hot reactor walls. Furthermore, the heat distribution has been investigated as one of the key parameters of the process. Finally, a proof of concept by rounding wet grinded PBT material was successfully conducted. The product was examined to obtain data about a change in particle size and flowability.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Development of a mobile toolmark characterization/comparison system [Development of a mobile, automated toolmark characterization/comparison system]

Since the development of the striagraph, various attempts have been made to enhance forensic investigation through the use of measuring and imaging equipment. This study describes the development of a prototype system employing an easy-to-use software interface designed to provide forensic examiners with the ability to measure topography of a toolmarked surface and then conduct various comparisons using a statistical algorithm. Acquisition of the data is carried out using a portable 3D optical profilometer, and comparison of the resulting data files is made using software named “MANTIS” (Mark and Tool Inspection Suite). The system has been tested on laboratory-produced markings that include fully striated marks (e.g., screwdriver markings), quasistriated markings produced by shear-cut pliers, impression marks left by chisels, rifling marks on bullets, and cut marks produced by knives. Using the system, an examiner has the potential to (i) visually compare two toolmarked surfaces in a manner similar to a comparison microscope and (ii) use the quantitative information embedded within the acquired data to obtain an objective statistical comparison of the data files. Finally, this study shows that, based on the results from laboratory samples, the system has great potential for aiding examiners in conducting comparisons of toolmarks.

47 OTHER INSTRUMENTATION↗