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At least 19 records

Analysis Ready Data in Analytics Optimized Data Stores for Analysis of Big Earth Data in the Cloud

Cloud computing offers the possibility of making the analysis of Big Data approachable for a wider community due to affordable access to computing power, an ecosystem of usable tools for parallel processing, and migration of many large datasets to archives in the cloud, allowing data-proximal computing. Generally, data analysis acceleration in the cloud comes from running multiple nodes in a split-combine-apply strategy. Data systems such as the Earth Observing System Data and Information System are in a position to "pre-split" the data by storing them in a data store that is optimized for data parallel computing, i.e., an Analytics-Optimized Data Store (AODS). A variety of approaches to AODS are possible, from highly scalable databases to scalable filesystems to data formats optimized for cloud access (e.g., zarr and cloud-optimized datasets), with the optimal choice dependent on both the types of analysis and the geospatial structure of the data. A key question is how much preprocessing of the data to do, both before splitting and as the first part of the apply step. Again, the geospatial structure of the data and the analysis type influence the decision, with the added complexity of the user type. Trans-disciplinary users who are not well-versed in the nuances of quality-filtering and georeferencing of remote sensing orbit/swath/scene data tend to ask for more highly processed data, relying on the data provider to make sensible decisions on preprocessing parameters. (This accounts for the popularity of "Level 3" gridded data, despite the lower spatial resolution it provides.) In this case, data can be preprocessed before the split, resulting in higher performance in the rest of the "apply" step, which can be transformative for use cases such as interactive data exploration at scale. Discipline researchers who are experienced with remote sensing data often prefer more flexibility in customizing the preprocessing data into Analysis Ready Data, resulting in more need for on-the-fly preprocessing.

Lynnes, Christopher↗

A cloud platform for atomic pair distribution function analysis: PDFitc

A cloud web platform for analysis and interpretation of atomic pair distribution function (PDF) data ( PDFitc ) is described. The platform is able to host applications for PDF analysis to help researchers study the local and nanoscale structure of nanostructured materials. The applications are designed to be powerful and easy to use and can, and will, be extended over time through community adoption and development. The currently available PDF analysis applications, structureMining, spacegroupMining and similarityMapping , are described. In the first and second the user uploads a single PDF and the application returns a list of best-fit candidate structures, and the most likely space group of the underlying structure, respectively. In the third, the user can upload a set of measured or calculated PDFs and the application returns a matrix of Pearson correlations, allowing assessment of the similarity between different data sets. structureMining is presented here as an example to show the easy-to-use workflow on PDFitc . In the future, as well as using the PDFitc applications for data analysis, it is hoped that the community will contribute their own codes and software to the platform.

97 MATHEMATICS AND COMPUTING↗

How to Cloud for Earth Scientists: An Introduction

This presentation is a tutorial on getting started with cloud computing for the purposes of Earth Observation datasets. We first discuss some of the main advantages that cloud computing can provide for the Earth scientist: copious processing power, immense and affordable data storage, and rapid startup time. We also talk about some of the challenges of getting the most out of cloud computing: re-organizing the way data are analyzed, handling node failures and attending.

cloud storage↗

Machine Learning for Synchrophasor Analysis

The report presents results from the development of a cloud-based, Big Data analysis framework for power systems. The computational pipeline uses the Apache Spark framework running in an OpenStack cloud infrastructure. A real-world phasor measurement unit (PMU) dataset has been used to carry out the analysis. Several Machine Learning (ML) methods have been developed and implemented for event and anomaly detection and classification. Actual examples of power system events detection and analysis using synchrophasor data are presented. It has been shown that applications of the cloud-based computing environment and the Apache Spark framework enable a significant increase in the computational efficiency of large-scale PMU data analysis.

20 FOSSIL-FUELED POWER PLANTS↗

Opportunities for Accelerating Research in the Cloud

As the data holdings of the Earth Observation System Data and Information System expand over the next several years, the typical data analysis process of downloading data to local compute resources will become increasingly inefficient. However, cloud computing promises to mitigate that by allowing the user to process close to the data. These improvements will be obtained via a variety of mechanisms: 1 - improving the ability of data transformation services to reduce the data prior to analysis; 2 - providing cloud-native analysis capabilities for common analysis functions; and 3 - providing the ability to work directly with data in Web Object Storage.

data system↗

Advancing Open Science Through Innovative Data System Solutions: The Joint ESA-NASA Multi-Mission Algorithm and Analysis Platform (MAAP)'s Data Ecosystem

Collaborative open science practices are changing the way research is conducted. These changes affect how scientists work together on data, code and information. Data systems enhance open science by offering forward thinking technological solutions, such as providing data and computation on the cloud, to enable collaboration, sharing and analysis. In this paper, we present our vision for a conceptual data system on the cloud that enables open science. We also present our work on the Multi-Mission Algorithm and Analysis Platform (MAAP)which has served as a pathfinder data system for this conceptual approach.

Kaylin Bugbee↗

The Astronomy Commons Platform: A Deployable Cloud-based Analysis Platform for Astronomy

Abstract We present a scalable, cloud-based science platform solution designed to enable next-to-the-data analyses of terabyte-scale astronomical tabular data sets. The presented platform is built on Amazon Web Services (over Kubernetes and S3 abstraction layers), utilizes Apache Spark and the Astronomy eXtensions for Spark for parallel data analysis and manipulation, and provides the familiar JupyterHub web-accessible front end for user access. We outline the architecture of the analysis platform, provide implementation details and rationale for (and against) technology choices, verify scalability through strong and weak scaling tests, and demonstrate usability through an example science analysis of data from the Zwicky Transient Facility’s 1Bn+ light-curve catalog. Furthermore, we show how this system enables an end user to iteratively build analyses (in Python) that transparently scale processing with no need for end-user interaction. The system is designed to be deployable by astronomers with moderate cloud engineering knowledge, or (ideally) IT groups. Over the past 3 yr, it has been utilized to build science platforms for the DiRAC Institute, the ZTF partnership, the LSST Solar System Science Collaboration, and the LSST Interdisciplinary Network for Collaboration and Computing, as well as for numerous short-term events (with over 100 simultaneous users). In a live demo instance, the deployment scripts, source code, and cost calculators are accessible. 4 4 http://hub.astronomycommons.org/

79 ASTRONOMY AND ASTROPHYSICS↗

GES DISC Data Recipes in Jupyter Notebooks

The Earth Science Data and Information System (ESDIS) Project manages twelve Distributed Active Archive Centers (DAACs) which are geographically dispersed across the United States. The DAACs are responsible for ingesting, processing, archiving, and distributing Earth science data produced from various sources (satellites, aircraft, field measurements, etc.). In response to projections of an exponential increase in data production, there has been a recent effort to prototype various DAAC activities in the cloud computing environment. This, in turn, led to the creation of an initiative, called the Cloud Analysis Toolkit to Enable Earth Science (CATEES), to develop a Python software package in order to transition Earth science data processing to the cloud. This project, in particular, supports CATEES and has two primary goals. One, to transition data recipes created by the Goddard Earth Science Data and Information Service Center (GES DISC) into an interactive and educational environment using JupyterNotebooks. Two, to acclimate Earth scientists to cloud computing. To accomplish these goals, we create JupyterNotebooks to compartmentalize the different steps of data analysis and help users obtain and parse data from the command line. We also develop a Docker container, comprised of Jupyter Notebooks, Python dependencies, and command line tools, and configure it into an easy-to-deploy package. The end result is an end-to-end product that simulates the use case of end users working in the cloud computing environment.

discoverability↗

IN13B-1660: Analytics and Visualization Pipelines for Big Data on the NASA Earth Exchange (NEX) and OpenNEX

We are developing capabilities for an integrated petabyte-scale Earth science collaborative analysis and visualization environment. The ultimate goal is to deploy this environment within the NASA Earth Exchange (NEX) and OpenNEX in order to enhance existing science data production pipelines in both high-performance computing (HPC) and cloud environments. Bridging of HPC and cloud is a fairly new concept under active research and this system significantly enhances the ability of the scientific community to accelerate analysis and visualization of Earth science data from NASA missions, model outputs and other sources. We have developed a web-based system that seamlessly interfaces with both high-performance computing (HPC) and cloud environments, providing tools that enable science teams to develop and deploy large-scale analysis, visualization and QA pipelines of both the production process and the data products, and enable sharing results with the community. Our project is developed in several stages each addressing separate challenge - workflow integration, parallel execution in either cloud or HPC environments and big-data analytics or visualization. This work benefits a number of existing and upcoming projects supported by NEX, such as the Web Enabled Landsat Data (WELD), where we are developing a new QA pipeline for the 25PB system.

visualization↗

NREL Stratus - Enabling Workflows to Fuse Data Streams, Modeling, Simulation, and Machine Learning

Integrating cloud services into advanced computing facilities provides significant new capabilities over focusing solely on traditional high performance computing (HPC) workloads. This brings complementary capabilities as well as enabling new focused roles for HPC. They are especially potent for workflows that fuse data streams, modeling and simulation ('modsim') and machine learning. A key challenge to adopting a hybrid edge-cloud-HPC model is to align optimal capability, data, and user intent on the right resources for each step in a workflow.?The NREL Stratus service provides a basis for this: Stratus layers capabilities needed to make?cloud services accessible to a lab-based scientific community on commercial offerings, and; currently supports upwards of 200 projects ranging from IOT integration to traditional modeling and simulation. This provides a real-world inventory of scientific workflow elements. A growing knowledge base enables placing these elements appropriately between the edge, cloud, and traditional HPC. This paper outlines a vision via reference architecture and the application of that architecture in a typical workflow highlighting multiple components: sensor data intake, cleaning and transforming (edge/cloud suitable); generation of synthetic data through modsim, computationally heavy ML training and hyperparameter optimization (HPC suitable), and; inference and deployment (cloud ideal). Every step in such a workflow involves a cost-benefit analysis regarding the data movement, computational efficiency, availability, latency, and resource capabilities. The reference architecture and examples outlined allow for understanding new opportunities in the context of emerging workflows that combine IOT, cloud, and HPC to bolster scientific productivity.

AI↗

28 NREL Stratus - Enabling Workflows to Fuse Data Streams, Modeling, Simulation, and Machine Learning: Preprint

Integrating cloud services into advanced computing facilities provides significant new capabilities over focusing solely on traditional high performance computing (HPC) workloads. This brings complementary capabilities as well as enabling new focused roles for HPC. They are especially potent for workflows that fuse data streams, modeling and simulation ('modsim') and machine learning. A key challenge to adopting a hybrid edge-cloud-HPC model is to align optimal capability, data, and user intent on the right resources for each step in a workflow.?The NREL Stratus service provides a basis for this: Stratus layers capabilities needed to make?cloud services accessible to a lab-based scientific community on commercial offerings, and; currently supports upwards of 200 projects ranging from IOT integration to traditional modeling and simulation. This provides a real-world inventory of scientific workflow elements. A growing knowledge base enables placing these elements appropriately between the edge, cloud, and traditional HPC. This paper outlines a vision via reference architecture and the application of that architecture in a typical workflow highlighting multiple components: sensor data intake, cleaning and transforming (edge/cloud suitable); generation of synthetic data through modsim, computationally heavy ML training and hyperparameter optimization (HPC suitable), and; inference and deployment (cloud ideal). Every step in such a workflow involves a cost-benefit analysis regarding the data movement, computational efficiency, availability, latency, and resource capabilities. The reference architecture and examples outlined allow for understanding new opportunities in the context of emerging workflows that combine IOT, cloud, and HPC to bolster scientific productivity.

AI↗

Archive Management of NASA Earth Observation Data to Support Cloud Analysis

NASA collects, processes and distributes petabytes of Earth Observation (EO) data from satellites, aircraft, in situ instruments and model output, with an order of magnitude increase expected by 2024. Cloud-based web object storage (WOS) of these data can simplify the execution of such an increase. More importantly, it can also facilitate user analysis of those volumes by making the data available to the massively parallel computing power in the cloud. However, storing EO data in cloud WOS has a ripple effect throughout the NASA archive system with unexpected challenges and opportunities. One challenge is modifying data servicing software (such as Web Coverage Service servers) to access and subset data that are no longer on a directly accessible file system, but rather in cloud WOS. Opportunities include refactoring of the archive software to a cloud-native architecture; virtualizing data products by computing on demand; and reorganizing data to be more analysis-friendly.

Lynnes, Christopher↗

Archive Management of NASA Earth Observation Data to Support Cloud Analysis

NASA collects, processes and distributes petabytes of Earth Observation (EO) data from satellites, aircraft, in situ instruments and model output, with an order of magnitude increase expected by 2024. Cloud-based web object storage (WOS) of these data can simplify the execution of such an increase. More importantly, it can also facilitate user analysis of those volumes by making the data available to the massively parallel computing power in the cloud. However, storing EO data in cloud WOS has a ripple effect throughout the NASA archive system with unexpected challenges and opportunities. One challenge is modifying data servicing software (such as Web Coverage Service servers) to access and subset data that are no longer on a directly accessible file system, but rather in cloud WOS. Opportunities include refactoring of the archive software to a cloud-native architecture; virtualizing data products by computing on demand; and reorganizing data to be more analysis-friendly. Reviewed by Mark McInerney ESDIS Deputy Project Manager.

Lynnes, Christopher↗

Seismology in the Cloud: A New Streaming Workflow

Data-intensive research in seismology is experiencing a recent boom, driven in part by large volumes of available data and advances in the growing field of data science. However, there are significant barriers to processing large data volumes, such as long retrieval times from data repositories, complex data management, and limited computational resources. New tools and platforms have reduced the barriers to entry for scientific cluster computing, including the maturation of the commercial cloud as an accessible instrument for research. Here, we build a customized research cluster in the cloud to test a new workflow for large-scale seismic analysis, in which data are processed as a stream (retrieved on-the-fly and acted upon without storing), with data from the Incorporated Research Institutions for Seismology Data Management Center. We use this workflow to deploy a spectral peak detection algorithm over 5.6 TB of compressed continuous seismic data from 2074 stations of the USArray Transportable Array EarthScope network. Using a 50-node cluster in the cloud, we completed the noise survey in 80 hr, with an average data throughput of 1.7 GB per minute. By varying cluster sizes, we find the scaling of our analysis to be sublinear, due to a combination of algorithmic limitations and data center response times. The cloud-based streaming workflow represents an order-of-magnitude increase in acquisition and processing speed compared to a traditional download-store-process workflow, and offers the additional benefits of employing a flexible, accessible, and widely used computing architecture. It is limited, however, due to its reliance on Internet transfer speeds and data center service capacity, and may not work well for repeated analyses or those for which even higher data throughputs are needed. These research applications will require a new class of cloud-native approaches in which both data and analysis are in the cloud.

58 GEOSCIENCES↗

User Metrics in NASA Earth Science Data Systems

This presentation the collection and use of user metrics in NASA's Earth Science data systems. A variety of collection methods is discussed, with particular emphasis given to the American Customer Satisfaction Index (ASCI). User sentiment on potential use of cloud computing is presented, with generally positive responses. The presentation also discusses various forms of automatically collected metrics, including an example of the relative usage of different functions within the Giovanni analysis system.

user metrics↗

ATLAS Data Analysis using a Parallel Workflow on Distributed Cloud-based Services with GPUs

A new type of parallel workflow is developed for the ATLAS experiment at the Large Hadron Collider, that makes use of distributed computing combined with a cloud-based infrastructure. This has been developed for a specific type of analysis using ATLAS data, one popularly referred to as Simulation-Based Inference (SBI). The JAX library is used for the parts of the workflow to compute gradients as well as accelerate program execution using just-in-time compilation, which becomes essential in a full SBI analysis and can also offer significant speed-ups in more traditional types of analysis.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Intelligent Observation Strategies for Geosynchronous Remote Sensing for Natural Hazards

Geosynchronous satellites offer a unique perspective for monitoring environmental factors important to understanding natural hazards and supporting the disasters management life cycle, namely forecast, detection, response, recovery and mitigation. In the NASA decadal survey for Earth science, the GEO-CAPE mission was proposed to address coastal and air pollution events in geosynchronous orbit, complementing similar initiatives in Asia by the South Koreans and by ESA in Europe, thereby covering the northern hemisphere. In addition to analyzing the challenges of identifying instrument capabilities to meet the science requirements, and the implications of hosting the instrument payloads on commercial geosynchronous satellites, the GEO-CAPE mission design team conducted a short study to explore strategies to optimize the science return for the coastal imaging instrument. The study focused on intelligent scheduling strategies that took into account cloud avoidance techniques as well as onboard processing methods to reduce the data storage and transmission loads. This paper expands the findings of that study to address the use of intelligent scheduling techniques and near-real time data product acquisition of both the coastal water and air pollution events. The topics include the use of onboard processing to refine and execute schedules, to detect cloud contamination in observations, and to reduce data handling operations. Analysis of state of the art flight computing capabilities will be presented, along with an assessment of cloud detection algorithms and their performance characteristics. Tools developed to illustrate operational concepts will be described, including their applicability to environmental monitoring domains with an eye to the future. In the geostationary configuration, the payload becomes a networked thing with enough connectivity to exchange data seamlessly with users. This allows the full field of view to be sensed at very high rate under the control of ground infrastructure, resulting in improved efficiencies, accuracy and science benefits. Hence a remote sensing payload and its data may become one of millions of connected objects in the emerging Internet of Things (IoT), and be as easily accessible by a users smart phone as any other smart appliance.