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Characterizing Vegetation Cover in Global Savannas with an Annual Foliage Clumping Index Derived from the MODIS BRDF Product

The global savanna biome is characterized by enormous diversity in the physiognomy and spatial structure of the vegetation. The foliage clumping index can be calculated from bidirectional reflectance distribution function (BRDF) data. It measures the response of the darkspot reflectance to increased shadow associated with clumped vegetation and is related to leaf area index. Clumping index theoretically declines with increasing woody cover until the tree canopy begins to become uniform. In this study, clumping index is calculated for Moderate Resolution Imaging Spectroradiometer BRDF data for the Australian tropical savanna, the tropical savannas of South America, and the tropical savannas of east, west and southern Africa and compared with site-based measurements of tree canopy cover, and with area-based classifications of land cover. There were differences in sensitivity of clumping index between red and near-infrared reflectance channels, and between savanna systems with markedly different woody vegetation physiognomy. Clumping index was broadly related to foliage cover from historical site data in Australia and in West Africa and Kenya, but not in Southern Africa nor with detailed site-based demographic data in the cerrado of Brazil. However, clumping index decreased with proportion of woody cover in land cover datasets for east Africa, Australia and the Colombian Llanos. There was overlap in the range of clumping index values for forest, cerrado and campo land covers in Brazil. Clumping index was generally negatively correlated with percentage tree cover from the MODIS Vegetation Continuous Fields product, but regional differences in the relationship were evident. There were large differences in the frequency distributions of clumping index from savanna, woody savanna and grassland land cover classes between global ecoregions. The clumping index shows differing sensitivity to savanna woody cover for red and NIR reflectance, and requires regional calibration for application as a universal indicator.

Hill, Michael J.↗

Measuring Gap Fraction, Element Clumping Index and LAI in Sierra Forest Stands Using a Full-Waveform Ground-Based Lidar

The Echidna Validation Instrument (EVI), a ground-based, near-infrared (1064 nm) scanning lidar, provides gap fraction measurements, element clumping index measurements, effective leaf area index (LAIe) and leaf area index (LAI) measurements that are statistically similar to those from hemispherical photos. In this research, a new method integrating the range dimension is presented for retrieving element clumping index using a unique series of images of gap probability (Pgap) with range from EVI. From these images, we identified connected gap components and found the approximate physical, rather than angular, size of connected gap component. We conducted trials at 30 plots within six conifer stands of varying height and stocking densities in the Sierra National Forest, CA, in August 2008. The element clumping index measurements retrieved from EVI Pgap image series for the hinge angle region are highly consistent (R2=0.866) with those of hemispherical photos. Furthermore, the information contained in connected gap component size profiles does account for the difference between our method and gap-size distribution theory based method, suggesting a new perspective to measure element clumping index with EVI Pgap image series and also a potential advantage of three dimensional Lidar data for element clumping index retrieval. Therefore further exploration is required for better characterization of clumped condition from EVI Pgap image series.

Zhao, Feng↗

BOREAS TE-23 Canopy Architecture and Spectral Data from Hemispherical Photographs

The Boreal Ecosystem-Atmospheric Study (BOREAS) TE-23 (Terrestrial Ecology) team collected hemispherical photographs in support of its efforts to characterize and interpret information on estimates of canopy architecture and radiative transfer properties for most BOREAS study sites. Various Old Aspen (OA), Old Black Spruce (OBS), Old Jack Pine (OJP), Young Jack Pine (YJP), and Young Aspen (YA) sites in the boreal forest were measured from May to August 1994. The hemispherical photographs were used to derive values of leaf area index (LAI), leaf angle, gap fraction, and clumping index. This documentation describes these derived values. The derived data are stored in tabular ASCII files. The hemispherical photographs are stored in the original set of 42 CD-ROMs that were supplied by TE-23. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Rich, Paul M.↗

A Method for Improving Hotspot Directional Signatures in BRDF Models Used for MODIS

The semi-empirical, kernel-driven, linear RossThick-LiSparseReciprocal (RTLSR) Bidirectional Reflectance Distribution Function (BRDF) model is used to generate the routine MODIS BRDFAlbedo product due to its global applicability and the underlying physics. A challenge of this model in regard to surface reflectance anisotropy effects comes from its underestimation of the directional reflectance signatures near the Sun illumination direction; also known as the hotspot effect. In this study, a method has been developed for improving the ability of the RTLSR model to simulate the magnitude and width of the hotspot effect. The method corrects the volumetric scattering component of the RTLSR model using an exponential approximation of a physical hotspot kernel, which recreates the hotspot magnitude and width using two free parameters (C(sub 1) and C(sub 2), respectively). The approach allows one to reconstruct, with reasonable accuracy, the hotspot effect by adjusting or using the prior values of these two hotspot variables. Our results demonstrate that: (1) significant improvements in capturing hotspot effect can be made to this method by using the inverted hotspot parameters; (2) the reciprocal nature allow this method to be more adaptive for simulating the hotspot height and width with high accuracy, especially in cases where hotspot signatures are available; and (3) while the new approach is consistent with the heritage RTLSR model inversion used to estimate intrinsic narrowband and broadband albedos, it presents some differences for vegetation clumping index (CI) retrievals. With the hotspot-related model parameters determined a priori, this method offers improved performance for various ecological remote sensing applications; including the estimation of canopy structure parameters.

airborne measurements↗

Spatial heterogeneity in vegetation canopies and remote sensing of absorbed photosynthetically active radiation - A modeling study

A 3D radiative transfer model is used to investigate the relationship between spectral indices and fraction of absorbed photosynthetically active radiation (PAR) in horizontally heterogeneous vegetation canopies. Canopy reflection at optical wavelengths and PAR absorption are simulated. Data obtained indicate that the leaf area index of a canopy is less of an instructive parameter than the ground cover and clump leaf area index for these canopies. It is found that the relationship between the normalized difference vegetation index and fraction of absorbed PAR is almost linear and independent of spatial heterogeneity.

Asrar, G.↗

Discrete anisotropic radiative transfer modelling of solar-induced chlorophyll fluorescence: Structural impacts in geometrically explicit vegetation canopies

Solar-induced fluorescence (SIF) is a subtle but informative optical signal of vegetation photosynthesis. Remotely sensed SIF integrates environmental, physiological and structural changes that alter photosynthesis at leaf, plant and canopy scales. Radiative transfer models are ideally suited to investigate the complex sources of variability in the SIF signal to guide the interpretation of SIF retrievals from airborne and space-borne platforms. Here, we coupled the Fluspect-Cx model of leaf optical properties and chlorophyll-a fluorescence with the Discrete Anisotropic Radiative Transfer (DART) model to upscale SIF from individual leaves to three-dimensional (3D) structurally explicit canopies. For one-dimensional homogeneous (turbid-like) canopies, DART-SIF was nearly identical to SIF simulated in two existing models, SCOPE and mSCOPE (RMSE <0.221 W./sq.m.μm.sr). DART simulations in geometrically explicit 3D canopies offered four important insights regarding the influence of vegetation structure on the multi-angular top-of-canopy SIF signal. First, changes in the 3D canopy architecture of maize crops, represented by leaf density (leaf area index), and plant clumping (canopy closure) had a larger impact on SIF than the modelled photosynthetic efficiency distinction between sun-adapted and shade-adapted foliage. Second, clumping of leaves at the crop and stand levels was identified as one of the key driving factors of multi-angular anisotropy of red and far-red SIF (686 and 740 nm) for both maize and eucalyptus canopies. Third, non-photosynthetic woody material had a significant impact on top-of-canopy SIF in modelled 3D forest stands. Wood shadowing decreased the photosynthetically active radiation absorbed by green leaves, and consequently the SIF emissions, by 10% in sparse and 17% in dense eucalyptus stands. The wood obstruction (blocking) effect, quantified as a relative difference of SIF escape probabilities from canopies with and without wood in the nadir viewing direction, decreased far-red SIF by 4–6% but it had a smaller and sometimes positive influence (by less than 2%) on red SIF. Fourth, DART 3D radiative budget profiles revealed that the majority of the SIF signal from a dense eucalyptus stand originated from the top 25% of the simulated canopy. Interestingly, the introduction of bark-covered woody elements did not alter the simulated balance and omnidirectional escape factor of red SIF in this upper canopy part but did raise significantly both of them in case of far-red SIF. These results demonstrate the importance of 3D radiative transfer and radiative budget simulations for investigating SIF interactions in structurally complex plant canopies and for a better understanding of spatiotemporal and multi-angular remote sensing SIF observations.

Zbyněk Malenovský↗

Shock propagation and the generation of magnetohydrodynamic wave fields in inhomogeneous molecular clouds

We develop a simple one-dimensional model for the interaction of a steady, thin, planar shock wave with a nonrigid cloud which may be in motion relative to the surrounding medium, and we apply the model to shocks impinging on, and propagating through, molecular clouds. Both 'adiabatic' (gamma = 5/3) and radiative (gamma = 1) shocks are considered and we allow for the presence of a uniform magnetic field directed either parallel or perpendicular to the shock normal. The former field orientation is equivalent to the hydrodynamic case, and the latter involves only fast MHD shocks. We focus on the manner in which such shocks can generate internal kinetic motions in the cloud on a range of size and density scales through the direct acceleration of cores and clumps by shocks transmitted into them and through the generation of an MHD wavefield via the reflection of the incident shock at clump boundaries. We find that stronger incident Mach numbers and smaller density contrasts lead to more efficient cloud acceleration, as do isothermal intercloud shocks and small intercloud magnetic field strengths. The acceleration efficiency is insensitive to the adiabatic index and the magnetic field strength in the cloud itself. For typical parameter choices, the direct acceleration of clouds and clumps by strong shocks is found to be substantial and could at least in part account for their observed velocity dispersions. If the shocks are moderately weak, the final velocity of the cloud is linearly related to its initial velocity, with higher acceleration giving shallower slopes (i.e., final velocity distributions which are less sensitive to the initial distribution). Compared to the kinetic energy of the postshock cloud, the energy given to the wavefield at each encounter is small, and the heating of the interclump medium by the dissipation of this wavefield is found to be insufficient to balance the cooling rate in the cloud as a whole (although it may be important in particular regions), even if this medium is warm, unless it is also extremely tenuous (n approximately less than 0.1/cu cm). Nevertheless, the correction for the velocity imparted to the cloud leads to a substantial increase in the critical incident Mach numner for wave emission over that reported by Spitzer for the rigid case. The implications of our model for shock-induced star formation are discussed briefly.

Miesch, Mark S.↗

Remote sensing of vegetation canopy photosynthetic and stomatal conductance efficiencies

The problem of remote sensing the canopy photosynthetic and stomatal conductance efficiencies is investigated with the aid of one- and three-dimensional radiative transfer methods coupled to a semi-empirical mechanistic model of leaf photosynthesis and stomatal conductance. Desertlike vegetation is modeled as clumps of leaves randomly distributed on a bright dry soil with partial ground cover. Normalized difference vegetation index (NDVI), canopy photosynthetic (Ep), and stomatal efficiencies (Es) are calculated for various geometrical, optical, and illumination conditions. The contribution of various radiative fluxes to estimates of Ep is evaluated and the magnitude of errors in bulk canopy formulation of problem parameters are quantified. The nature and sensitivity of the relationship between Ep and Es to NDVI is investigated, and an algorithm is proposed for use in operational remote sensing.

Myneni, R. B.↗

High Resolution Three-Color Imaging of Spirals With Nuclear Star-Forming Rings

Nuclear rings in barred spirals offer an opportunity to study starburst properties in order to develop an understanding of the evolution of star formation in galaxies. To achieve this understanding, a large scale imaging survey in the H alpha line and in the B and I broad bands has been performed. Analysis of all galaxies that reveal nuclear rings in the H alpha line will be compared to numerical models so that the relative ages between the starforming clumps can be estimated. The luminosity function of the starforming regions will be related to the measured properties of the associated star-cluster and the required ionizing flux. Also B - I color index images will be performed to indicate the location of the dust lanes.

Mazzuca, Lisa↗

First Test of Stochastic Growth Theory for Langmuir Waves in Earth's Foreshock

This paper presents the first test of whether stochastic growth theory (SGT) can explain the detailed characteristics of Langmuir-like waves in Earth's foreshock. A period with unusually constant solar wind magnetic field is analyzed. The observed distributions P(logE) of wave fields E for two intervals with relatively constant spacecraft location (DIFF) are shown to agree well with the fundamental prediction of SGT, that P(logE) is Gaussian in log E. This stochastic growth can be accounted for semi-quantitatively in terms of standard foreshock beam parameters and a model developed for interplanetary type III bursts. Averaged over the entire period with large variations in DIFF, the P(logE) distribution is a power-law with index approximately -1; this is interpreted in terms of convolution of intrinsic, spatially varying P(logE) distributions with a probability function describing ISEE's residence time at a given DIFF. Wave data from this interval thus provide good observational evidence that SGT can sometimes explain the clumping, burstiness, persistence, and highly variable fields of the foreshock Langmuir-like waves.

Cairns, Iver H.↗

Multifrequency radio images of L1551 IRS 5

L1551 IRS 5 has been observed at 15 GHz, 5 GHz, and 1.5 GHz with the VLA, and the findings are discussed. At 15 GHz, the central core is well resolved into two pointlike sources surrounded by weaker extended emission. The northern, brighter source is coincident with the peak at 5 GHz. The jet seen at 5 GHz is barely detected at 15 GHz. There is clearcut evidence for a much flatter spectral index in the extended (jet) structure than in either of the two point sources. The observed length-to-width ratio in the jet is greater than ten. It is suggested that L1551 IRS 5 is a binary system whose orbital plane coincides with the CS molecular toroid. A model of the jet is summarized in which the jet contains small clumps which dominate the 15 GHz emission.

Bieging, J. H.↗

Multiple outflows in the bipolar planetary nebula M1-16: A molecular line study

Extensive observations of the molecular gas in the young, compact planetary nebula M1-16 have been made, using the Swedish-ESO-Submillimeter Telescope. A map of the CO J = 2-1 emission shows that the molecular envelope contains both a slow and a fast outflow with expansion velocities of 19 km/s and greater than 34 km/s, respectively. The slow outflow is mildly elliptical, while the fast molecular outflow is bipolar. This fast outflow is roughly aligned with the very fast outflows recently found in the optical, while the long axis of the slow elliptical outflow is roughly orthogonal to the optical outflow axis. The kinematic timescales for the CO fast outflow and the optical very fast outflow agree closely, supporting the view that the former represents material in the slow outflow accelerated by the very fast outflow. The kinematic signature of a disk expanding with about 15.5 km/s can also be seen in the CO J = 2-1 data. The mass-loss rate (a) for the slow outflow is greater than or equal to 2.8 x 10(exp -5) solar mass/yr and possibly as large as 9 x 10(exp -5) solar mass/yr, (b) for the fast outflow is greater than or equal to 5 x 10(exp -6) solar mass/yr, and (c) for the very fast optically visible outflow is approximately equal 5 x 10(exp -7) solar mass/yr. The disk mass is approximately equal 6 x 10(exp -3) solar mass. Grain photoelectric heating results in temperatures of 20-70 K in molecular gas of the slow outflow. The (13)C/(12)C abundance ratio in M1-16 is found to be 0.33, quite possibly the highest found for any evolved object. Upper limits for the (18)O/(16)O and (17)O/(16)O ratios were found to be consistent with the values found in AGB stars. A search for other molecular species in M1-16 resulted in the detection of the high-excitation species HCN, CN, (13)CN, HCO(+), and H(13)CO(+) and possibly N2H(+). Both the HCO(+)/HCN and CN/HCN line-intensity ratios are enhanced, the former by a very large factor, over the values found in the envelopes of AGB stars, probably as a result of enhancement of the CN and HCO(+) abundances due to photochemistry induced by the stellar UV. The CS J = 2-1, SiO J = 2-1 (v = 0), and SiS J = 6-5 lines were not detected to low levels. For the high-excitation molecules, adequate collisional excitation of rotational levels and survival against photodissociation by the UV radiation requires significant clumping of the molecular gas into clumps with H2 densities approximately 10(exp 5)/cu cm. The IRAS fluxes of M1-16, assuming negligible contribution from line emission, imply the presence of about (1.7-0.4) x 10(exp -3) solar mass of cool dust (temperature around 50 K) and a smaller quantity, (2.7-3.1) x 10(exp -6) solar mass, of warmer dust (temperature around 125 K) for a power-law emissivity index p = 1-2. The evolutionary nature of M1-16 cannot be explained by existing single-star models of post-AGB evolution. The very high (13)C/(12)C abundance ratio in M1-16 suggests a possible evolutionary connection between M1-16 and the rare class of J-type silicate-carbon stars which also have high (13)C/(12)C ratios and are thought to be binary systems with accretion disks.

Sahai, Raghvendra↗

Leonid Storm Flux Analysis From One Leonid MAC Video AL50R

A detailed meteor flux analysis is presented of a seventeen-minute portion of one videotape, collected on November 18, 1999, during the Leonid Multi-instrument Aircraft Campaign. The data was recorded around the peak of the Leonid meteor storm using an intensified CCD camera pointed towards the low southern horizon. Positions of meteors on the sky were measured. These measured meteor distributions were compared to a Monte Carlo simulation, which is a new approach to parameter estimation for mass ratio and flux. Comparison of simulated flux versus observed flux levels, seen between 1:50:00 and 2:06:41 UT, indicate a magnitude population index of r = 1.8 +/- 0.1 and mass ratio of s = 1.64 +/- 0.06. The average spatial density of the material contributing to the Leonid storm peak is measured at 0.82 +/- 0.19 particles per square kilometer per hour for particles of at least absolute visual magnitude +6.5. Clustering analysis of the arrival times of Leonids impacting the earth's atmosphere over the total observing interval shows no enhancement or clumping down to time scales of the video frame rate. This indicates a uniformly random temporal distribution of particles in the stream encountered during the 1999 epoch. Based on the observed distribution of meteors on the sky and the model distribution, recommendations am made for the optimal pointing directions for video camera meteor counts during future ground and airborne missions.

Gural, Peter S.↗

Multi-Scale Fractal Analysis of Image Texture and Pattern

Fractals embody important ideas of self-similarity, in which the spatial behavior or appearance of a system is largely scale-independent. Self-similarity is a property of curves or surfaces where each part is indistinguishable from the whole. The fractal dimension D of remote sensing data yields quantitative insight on the spatial complexity and information content contained within these data. Analyses of Normalized Difference Vegetation Index (NDVI) images of homogeneous land covers near Huntsville, Alabama revealed that the fractal dimension of an image of an agricultural land cover indicates greater complexity as pixel size increases, a forested land cover gradually grows smoother, and an urban image remains roughly self-similar over the range of pixel sizes analyzed(l0 to 80 meters). The forested scene behaves as one would expect-larger pixel sizes decrease the complexity of the image as individual clumps of trees are averaged into larger blocks. The increased complexity of the agricultural image with increasing pixel size results from the loss of homogeneous groups of pixels in the large fields to mixed pixels composed of varying combinations of NDVI values that correspond to roads and vegetation. The same process occur's in the urban image to some extent, but the lack of large, homogeneous areas in the high resolution NDVI image means the initially high D value is maintained as pixel size increases. The slope of the fractal dimension-resolution relationship provides indications of how image classification or feature identification will be affected by changes in sensor resolution.

Emerson, Charles W.↗

Growth and Metabolism of the Green Alga, Chlorella Pyrenoidosa, in Simulated Microgravity

The effect of microgravity on living organisms during space flight has been a topic of interest for some time, and a substantial body of knowledge on the subject has accumulated. Despite this, comparatively little information is available regarding the influence of microgravity on algae, even though it has been suggested for long duration flight or occupancy in space that plant growth systems, including both higher plants and algae, are likely to be necessary for bioregenerative life support systems. High-Aspect-Ratio Rotating-Wall Vessel or HARV bioreactors developed at Johnson Space Center provide a laboratory-based approach to investigating the effects of microgravity on cellular reactions. In this study, the HARV bioreactor was used to examine the influence of simulated microgravity on the growth and metabolism of the green alga, Chlorella pyrenoidosa. After the first 2 days of culture, cell numbers increased more slowly in simulated microgravity than in the HARV gravity control; after 7 days, growth in simulated microgravity was just over half (58%) that of the gravity control and at 14 days it was less than half (42%). Chlorophyll and protein were also followed as indices of cell competence and function; as with growth, after 2-3 days, protein and chlorophyll levels were reduced in modeled microgravity compared to gravity controls. Photosynthesis is a sensitive biochemical index of the fitness of photosynthetic organisms; thus, CO2-dependent O2 evolution was tested as a measure of photosynthetic capacity of cells grown in simulated microgravity. When data were expressed with respect to cell number, modeled microgravity appeared to have little effect on CO2 fixation. Thus, even though the overall growth rate was lower for cells cultured in microgravity, the photosynthetic capacity of the cells appears to be unaffected. Cells grown in simulated microgravity formed loose clumps or aggregates within about 2 days of culture, with aggregation increasing over time. Presently, the basis for, or significance of, the cell aggregation is unknown. The results from this study suggest that cell growth and morphological characteristics of green algae may be altered by culture in simulated microgravity. The data obtained to date should provide a solid basis for additional experimentation regarding the influence of modeled microgravity on cell morphology, physiological activity, protein production and possibly gene expression in algal and plant cell systems. The final aim of the study is to provide useful information to elucidate the underlying mechanism for the biological effects of microgravity on cells.

Mills, W. Ronald↗

Quantifying Vegetation Change in Semiarid Environments: Precision and Accuracy of Spectral Mixture Analysis and the Normalized Difference Vegetation Index

Because in situ techniques for determining vegetation abundance in semiarid regions are labor intensive, they usually are not feasible for regional analyses. Remotely sensed data provide the large spatial scale necessary, but their precision and accuracy in determining vegetation abundance and its change through time have not been quantitatively determined. In this paper, the precision and accuracy of two techniques, Spectral Mixture Analysis (SMA) and Normalized Difference Vegetation Index (NDVI) applied to Landsat TM data, are assessed quantitatively using high-precision in situ data. In Owens Valley, California we have 6 years of continuous field data (1991-1996) for 33 sites acquired concurrently with six cloudless Landsat TM images. The multitemporal remotely sensed data were coregistered to within 1 pixel, radiometrically intercalibrated using temporally invariante surface features and geolocated to within 30 m. These procedures facilitated the accurate location of field-monitoring sites within the remotely sensed data. Formal uncertainties in the registration, radiometric alignment, and modeling were determined. Results show that SMA absolute percent live cover (%LC) estimates are accurate to within ?4.0%LC and estimates of change in live cover have a precision of +/-3.8%LC. Furthermore, even when applied to areas of low vegetation cover, the SMA approach correctly determined the sense of clump, (i.e., positive or negative) in 87% of the samples. SMA results are superior to NDVI, which, although correlated with live cover, is not a quantitative measure and showed the correct sense of change in only 67%, of the samples.

Elmore, Andrew J.↗