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At least 19 records

CAML: Commutative Algebra Machine Learning─A Case Study on Protein–Ligand Binding Affinity Prediction

Recently, Suwayyid and Wei introduced commutative algebra as an emerging paradigm for machine learning and data science. In this work, we propose commutative algebra machine learning (CAML) for the prediction of protein−ligand binding affinities. Specifically, we apply persistent Stanley−Reisner theory, a key concept in combinatorial commutative algebra, to the affinity predictions of protein−ligand binding and metalloprotein−ligand binding. We present three new algorithms, i.e., element-specific commutative algebra, category-specific commutative algebra, and commutative algebra on bipartite complexes, to tackle the complexity of data involved in (metallo) protein−ligand complexes. We show that the proposed CAML outperforms other state-of-theart methods in (metallo) protein−ligand binding affinity predictions, indicating the great potential of commutative algebra learning.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Commutative Algebra Modeling in Materials Science – A Case Study on Metal–Organic Frameworks (MOFs)

Metal-organic frameworks (MOFs) are a class of important crystalline and highly porous materials whose hierarchical geometry and chemistry hinder interpretable predictions in materials properties. Commutative algebra is a branch of abstract algebra that has been rarely applied in data and material sciences. We introduce the first ever commutative algebra modeling and prediction in materials science. Specifically, category-specific commutative algebra (CSCA) is proposed as a new framework for MOF representation and learning. It integrates element-based categorization with multiscale algebraic invariants to encode both local coordination motifs and global network organization of MOFs. These algebraically consistent, chemically aware representations enable compact, interpretable, and data efficient modeling of MOF properties such as Henry’s constants and uptake capacities for common gases. Compared to traditional geometric and graph-based approaches, CSCA achieves comparable or superior predictive accuracy while substantially improving interpretability and stability across data sets. By aligning commutative algebra with the chemical hierarchy, the CSCA establishes a rigorous and generalizable paradigm for understanding structure and property relationships in porous materials and provides a nonlinear algebra-based framework for data-driven material discovery.

Khaemba, Caleb S.↗

Infidelity Associated with Eliminating the Bus Resonator

This summer project started out to quantify the error associated with an approximate model of a superconducting circuit, where two qubits are dispersively coupled through a bus resonator. Understanding this error helps us decide if the approximate model is sufficient for the purpose of optimal control. We find out that the error of the approximate model covers up a nontrivial problem of the underlying circuit, which limits the fidelity of two-qubit gates under 99% for practical parameters. This suggests that high fidelity gates of this circuit cannot be achieved through optimal control alone, and changes of the parameters/design of the circuits appear necessary. Additionally, to carry out the algebra involved, a symbolic commutator algebra package HamMaker is developed in Julia. The package is capable of automating some difficult algebra in optimal control that previously had to be performed by hand. Within this work, HamMaker has been used to derived some simple but nontrivial corrections to the existing effective Hamiltonian.

74 ATOMIC AND MOLECULAR PHYSICS↗

Landau quantization of multilayer graphene on a Haldane sphere

Here, we consider the problem of multilayer graphene on a Haldane sphere and determine the Landau level spectrum for this family of systems. This serves as a generalization of the Landau quantization problem of ordinary nonrelativistic Haldane sphere and spherical graphene, or Dirac-like particles on a sphere. The Hamiltonian is diagonalized in a concise algebraic fashion exploiting two mutually commuting SU(2) algebras of the problem. Additionally, using exact wave functions we demonstrate computation of Haldane pseudopotentials in the second Landau level. These exact solutions add to the current toolkits of the numerical studies on fractional quantum Hall effects in systems of graphite multilayers.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Semicoherent symmetric quantum processes: Theory and applications

Discovering pragmatic and efficient approaches to construct ε-approximations of quantum operators such as real (imaginary) time-evolution propagators in terms of the basic quantum operations (gates) is challenging. Prior ε-approximations are invaluable, in that they enable the compilation of classical and quantum algorithm modeling of, e.g., dynamical and thermodynamic quantum properties. In parallel, symmetries are powerful tools concisely describing the fundamental laws of nature; the symmetric underpinnings of physical laws have consistently provided profound insights and substantially increased predictive power. In this work, we consider the interplay between the ε-approximate processes and the exact symmetries in a semicoherent context—where measurements occur at each logical clock cycle. Here we draw inspiration from Pascual Jordan's groundbreaking formulation of nonassociative, but commutative, symmetric algebraic form. Our symmetrized formalism is then applied in various domains such as quantum random walks, real-time evolutions, variational algorithm ansatzes, and efficient entanglement verification. Our work paves the way for a deeper understanding and greater appreciation of how symmetries can be used to control quantum dynamics in settings where coherence is a limited resource.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Uniqueness of MHV Gravity Amplitudes

We investigate MHV tree-level gravity amplitudes as defined on the spinor-helicity variety. Unlike their gluon counterparts, the gravity amplitudes do not have logarithmic singularities and do not admit Amplituhedron-like construction. Importantly, they are not determined just by their singularities, but rather their numerators have interesting zeroes. We make a conjecture about the uniqueness of the numerator and explore this feature from a more mathematical perspective. This leads us to a new approach for examining adjoints. We outline steps of our proposed proof and provide computational evidence for its validity in specific cases.

adjoints↗

On the Poincare noninvariance of a recent alternative to the Dirac equation.

Explicit construction of the infinitesimal generators of the Poincare group, demonstrating that the algebra of commutators closes only for the case of zero mass. Hence, the so-called Stigma equation proposed by Biedenharn et al. (1971) as an alternative to the Dirac equation (1928) for spin one-half, finite mass particles is not Poincare invariant except when the leptonic mass is zero.

Madan, R. N.↗

von Neumann algebras in JT gravity

We quantize JT gravity with matter on the spatial interval with two asymptotically AdS boundaries. We consider the von Neumann algebra generated by the right Hamiltonian and the gravitationally dressed matter operators on the right boundary. We prove that the commutant of this algebra is the analogously defined left boundary algebra and that both algebras are type II ∞ factors. These algebras provide a precise notion of the entanglement wedge away from the semiclassical limit. We comment on how the factorization problem differs between pure JT gravity and JT gravity with matter.

2D Gravity↗

Next-to-$\mathrm{MHV}$ Yang-Mills kinematic algebra

Kinematic numerators of Yang-Mills scattering amplitudes possess a rich Lie algebraic structure that suggest the existence of a hidden infinite-dimensional kinematic algebra. Explicitly realizing such a kinematic algebra is a longstanding open problem that only has had partial success for simple helicity sectors. In past work, we introduced a framework using tensor currents and fusion rules to generate BCJ numerators of a special subsector of NMHV amplitudes in Yang-Mills theory. Here we enlarge the scope and explicitly realize a kinematic algebra for all NMHV amplitudes. Master numerators are obtained directly from the algebraic rules and through commutators and kinematic Jacobi identities other numerators can be generated. Inspecting the output of the algebra, we conjecture a closed-form expression for the master BCJ numerator up to any multiplicity. We also introduce a new method, based on group algebra of the permutation group, to solve for the generalized gauge freedom of BCJ numerators. It uses the recently introduced binary BCJ relations to provide a complete set of NMHV kinematic numerators that consist of pure gauge.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Quons, an interpolation between Bose and Fermi oscillators

After a brief mention of Bose and Fermi oscillators and of particles which obey other types of statistics, including intermediate statistics, parastatistics, paronic statistics, anyon statistics, and infinite statistics, I discuss the statistics of 'quons' (pronounced to rhyme with muons), particles whose annihilation and creation operators obey the q-deformed commutation relation (the quon algebra or q-mutator) which interpolates between fermions and bosons. I emphasize that the operator for interaction with an external source must be an effective Bose operator in all cases. To accomplish this for parabose, parafermi and quon operators, I introduce parabose, parafermi, and quon Grassmann numbers, respectively. I also discuss interactions of non-relativistic quons, quantization of quon fields with antiparticles, calculation of vacuum matrix elements of relativistic quon fields, demonstration of the TCP theorem, cluster decomposition, and Wick's theorem for relativistic quon fields, and the failure of local commutativity of observables for relativistic quon fields. I conclude with the bound on the parameter q for electrons due to the Ramberg-Snow experiment.

Greenberg, O. W.↗

Geometric invariants of quantum metrology

Here, we establish a conservation law for the Quantum Fisher Information Matrix (QFIM) expressed as follows; when the QFIM is constructed from a set of observables closed under commutation, i.e., a Lie algebra, the spectrum of the QFIM is invariant under unitary dynamics generated by these same operators. Each Lie algebra therefore endows any quantum state with a fixed “budget” of metrological sensitivity—an intrinsic resource that we show, like optical squeezing in interferometry, cannot be amplified by symmetry-preserving operations. The Uhlmann curvature tensor naturally inherits the same symmetry group, and so quantum incompatibility is similarly fixed. As a result, a metrological analog to Liouville's theorem appears; statistical distances, volumes, and curvatures are invariant under the evolution generated by the Lie algebra. We discuss this as it relates to the quantum analogs of classical optimality criteria. This enables one to efficiently classify useful classes of quantum states at the level of Lie algebras through geometric invariants.

Wilson, Christopher [University of Colorado, Bould↗

Self-duality under gauging a non-invertible symmetry

Abstract We discuss two-dimensional conformal field theories (CFTs) which are invariant under gauging a non-invertible global symmetry. At every point on the orbifold branch ofc= 1 CFTs, it is known that the theory is self-dual under gauging a ℤ 2 × ℤ 2 symmetry, and has Rep(H 8 ) and Rep(D 8 ) fusion category symmetries as a result. We find that gauging the entire Rep(H 8 ) fusion category symmetry maps the orbifold theory at radiusRto that at radius 2/R. AtR=$$ \sqrt{2} $$ 2 , which corresponds to two decoupled Ising CFTs (Ising 2 in short), the theory is self-dual under gauging the Rep(H 8 ) symmetry. This implies the existence of a topological defect line in the Ising 2 CFT obtained from half-space gauging of the Rep(H 8 ) symmetry, which commutes with thec= 1 Virasoro algebra but does not preserve the fully extended chiral algebra. We bootstrap its action on thec= 1 Virasoro primary operators, and find that there are no relevant or marginal operators preserving it. Mathematically, the new topological line combines with the Rep(H 8 ) symmetry to form a bigger fusion category which is a ℤ 2 -extension of Rep(H 8 ). We solve the pentagon equations including the additional topological line and find 8 solutions, where two of them are realized in the Ising 2 CFT. Finally, we show that the torus partition functions of the Monster 2 CFT and Ising×Monster CFT are also invariant under gauging the Rep(H 8 ) symmetry.

Physics↗

Einstein–Rosen waves and the Geroch group

Under the action of the Geroch group, the Minkowski metric can be transformed into any vacuum metric with two commuting Killing vectors. In principle, this reduces the problem of deriving vacuum metrics with two commuting Killing vectors to pure algebra. In this short note, we use these facts to give a purely algebraic derivation of the Einstein-Rosen metric, which describes a cylindrical gravitational wave. Furthermore, our derivation has a straightforward extension to gravitational pulse waves.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

An algebraic formula for two loop renormalization of scalar quantum field theory

We find a general formula for the two-loop renormalization counterterms of a scalar quantum field theory with interactions containing up to two derivatives, extending ’t Hooft’s one-loop result. The method can also be used for theories with higher derivative interactions, as long as the terms in the Lagrangian have at most one derivative acting on each field. We show that diagrams with factorizable topologies do not contribute to the renormalization group equations. The results in this paper will be combined with the geometric method in a subsequent paper to obtain the counterterms and renormalization group equations for the scalar sector of effective field theories (EFT) to two-loop order.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Holography and unitarity

If holography is an equivalence between quantum theories, one might expect it to be described by a map that is a bijective isometry between bulk and boundary Hilbert spaces, preserving the hamiltonian and symmetries. Holography has been believed to be a property of gravitational (or string) theories, but not of non-gravitational theories; specifically Marolf has argued that it originates from the gauge symmetries and constraints of gravity. These observations suggest study of the assumed holographic map as a function of the gravitational coupling G . The zero coupling limit gives ordinary quantum field theory, and is therefore not necessarily expected to be holographic. This, and the structure of gravity at non-zero G , raises important questions about the full map. In particular, construction of a holographic map appears to require as input a solution of the nonperturbative analog of the bulk gravitational constraints, that is, the unitary bulk evolution. Moreover, examination of the candidate boundary algebra, including the boundary hamiltonian, reveals commutators that don’t close in the usual fashion expected for a boundary theory.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Symmetry reduction of tensor networks in many-body theory: I. Automated symbolic evaluation of SU(2) algebra

Abstract The ongoing progress in (nuclear) many-body theory is accompanied by an ever-rising increase in complexity of the underlying formalisms used to solve the stationary Schrödinger equation. The associated working equations at play in state-of-the-art ab initio nuclear many-body methods can be analytically reduced with respect to angular-momentum, i.e. SU (2), quantum numbers whenever they are effectively employed in a symmetry-restricted context. The corresponding procedure constitutes a tedious and error-prone but yet an integral part of the implementation of those many-body frameworks. Indeed, this symmetry reduction is a key step to advance modern simulations to higher accuracy since the use of symmetry-adapted tensors can decrease the computational complexity by orders of magnitude. While attempts have been made in the past to automate the (anti-) commutation rules linked to Fermionic and Bosonic algebras at play in the derivation of the working equations, there is no systematic account to achieve the same goal for their symmetry reduction. In this work, the first version of an automated tool performing graph-theory-based angular-momentum reduction is presented. Taking the symmetry-unrestricted expressions of a generic tensor network as an input, the code provides their angular-momentum-reduced form in an error-safe way in a matter of seconds. Several state-of-the-art many-body methods serve as examples to demonstrate the generality of the approach and to highlight the potential impact on the many-body community.

Tichai, A.↗

Non-commutative disintegrations: Existence and uniqueness in finite dimensions

Motivated by advances in categorical probability, we introduce non-commutative almost everywhere (a.e.) equivalence and disintegrations in the setting of C*-algebras. We show that C*-algebras (resp. W*-algebras) and a.e. equivalence classes of 2-positive (resp. positive) unital maps form a category. We prove non-commutative disintegrations are a.e. unique whenever they exist. We provide an explicit characterization for when disintegrations exist in the setting of finite-dimensional C*-algebras, and we give formulas for the associated disintegrations.

97 MATHEMATICS AND COMPUTING↗