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At least 19 records

Nonsynonymous amino acid changes in the α-chain of complement component 5 influence longitudinal susceptibility to Plasmodium falciparum infections and severe malarial anemia in kenyan children

Background: Severe malarial anemia (SMA; Hb < 5.0 g/dl) is a leading cause of childhood morbidity and mortality in holoendemic Plasmodium falciparum transmission regions such as western Kenya. Methods: We investigated the relationship between two novel complement component 5 (C5) missense mutations [rs17216529:C>T, p(Val145Ile) and rs17610:C>T, p(Ser1310Asn)] and longitudinal outcomes of malaria in a cohort of Kenyan children (under 60 mos, n = 1,546). Molecular modeling was used to investigate the impact of the amino acid transitions on the C5 protein structure. Results: Prediction of the wild-type and mutant C5 protein structures did not reveal major changes to the overall structure. However, based on the position of the variants, subtle differences could impact on the stability of C5b. The influence of the C5 genotypes/haplotypes on the number of malaria and SMA episodes over 36 months was determined by Poisson regression modeling. Genotypic analyses revealed that inheritance of the homozygous mutant (TT) for rs17216529:C>T enhanced the risk for both malaria (incidence rate ratio, IRR = 1.144, 95%CI: 1.059–1.236, p = 0.001) and SMA (IRR = 1.627, 95%CI: 1.201–2.204, p = 0.002). In the haplotypic model, carriers of TC had increased risk of malaria (IRR = 1.068, 95%CI: 1.017–1.122, p = 0.009), while carriers of both wild-type alleles (CC) were protected against SMA (IRR = 0.679, 95%CI: 0.542–0.850, p = 0.001). Conclusion: Collectively, these findings show that the selected C5 missense mutations influence the longitudinal risk of malaria and SMA in immune-naïve children exposed to holoendemic P. falciparum transmission through a mechanism that remains to be defined.

60 APPLIED LIFE SCIENCES↗

CATCOM catalyst 5 atm 1000 hour aging study using No. 2 fuel oil

The durability of the CATCOM catalyst for use in catalytically supported thermal combustion has been demonstrated at 5 atm, complementing a previous 1000 hour durability study at 1 atm. Both of these studies were conducted at about 640 K air preheat temperature at a reference velocity of about 14 m/s; the adiabatic flame temperature of the fuel/air mixture was about 1530 K. The catalyst proved to be capable of low emissions operations after 1000 hours of diesel fuel aging. However, more severe deactivation occurred in the 5 atm test; this was attributed to a loss in kinetic (ignition) activity.

Osgerby, I. T.↗

Transient Fine-Scale Brightenings, Flows and Flux Cancellation in the Cool Arch Filament System Observed with HiC2.1

Solar active regions (ARs) contain the brightest and hottest coronal EUV (Extreme Ultra-Violet) loops - the core of an AR is typically the brightest structure inside the AR. In the present work we report fine-scale transient brightenings and flows in the coolest loops (the counterpart of chromospheric arch filament systems long observed in H-alpha filtergrams of bipolar emerging flux regions) seen in the core of an AR observed in 172 angstroms by Hi-C2.1 (High Resolution Coronal Imager, version 2.1). Some of these are rooted, at one of their feet, in mixed-polarity field in the photosphere. We complement the 5-min Hi-C2.1 data with SDO/AIA/HMI (Solar Dynamics Observatory / Atmospheric Imaging Assembly / Helioseismic and Magnetic Imager) and IRIS SJ (Interface Region Imaging Spectrograph Slit-Jaw) images and spectral data, and examine fine-scale events, flows and their photospheric magnetic field. We find counter streaming flows in the arch filament system, similar to that long observed in filaments. There are scattered fine-scale brightening events. Most, if not all, of these brightenings are at sites of converging opposite-polarity magnetic flux (implying flux cancellation, sometimes resulting from flux emergence). The fine-scale flows stem from some of the brightenings. Flux cancellation at these sites apparently results in fine-scale explosions that drive the counter streaming flows. In the IRIS spectra, we look for evidence of upflows from brightenings at ends of loops of the arch filament system.

Tiwari, Sanjiv K.↗

Competing antiferromagnetic-ferromagnetic states in a d 7 Kitaev honeycomb magnet

The Kitaev model is a rare example of an analytically solvable and physically instantiable Hamiltonian yielding a topological quantum spin liquid ground state. Here we report signatures of Kitaev spin liquid physics in the honeycomb magnet Li 3 Co 2 SbO 6 , built of high-spin d 7 (Co 2+ ) ions, in contrast to the more typical low-spin d 5 electron configurations in the presence of large spin-orbit coupling. Neutron powder diffraction measurements, heat capacity, and magnetization studies support the development of a long-range antiferromagnetic order space group of C C 2/m, below T N = 11K at μ 0 H = 0T. The magnetic entropy recovered between T = 2 and 50 K is estimated to be 0.6Rln2, in good agreement with the value expected for systems close to a Kitaev quantum spin liquid state. The temperature-dependent magnetic order parameter demonstrates a β value of 0.19(3), consistent with XY anisotropy and in-plane ordering, with Ising-like interactions between layers. Further, we observe a spin-flop-driven crossover to ferromagnetic order with space group of C2/m under an applied magnetic field of μ 0 H ≈ 0.7T at T = 2K. Magnetic structure analysis demonstrates these magnetic states are competing at finite applied magnetic fields even below the spin-flop transition. Both the d 7 compass model, a quantitative comparison of the specific heat of Li 3 Co 2 SbO 6 , and related honeycomb cobaltates to the anisotropic Kitaev model further support proximity to a Kitaev spin liquid state. Furthermore, this material demonstrates the rich playground of high-spin d 7 systems for spin liquid candidates and complements known d 5 Ir- and Ru-based materials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Conceptual design of DIII-D experiments to diagnose the lifetime of spin polarized fuel

Abstract In magnetic fusion experiments, the cross sections for the D-T and D- 3 He fusion reactions are increased by as much as 50% if the fuel remains spin polarized parallel to the magnetic field. The goal of this study is to assess the feasibility of lifetime measurements of spin polarization, in magnetic fusion relevant conditions, on the DIII-D tokamak using relative changes in charged fusion product (CFP) loss measurements that depend upon the differential fusion cross section d σ /dΩ. Relative measurements that capture changes in the escaping CFP pitch, poloidal, and energy distributions are studied in two realistic TRANSP calculated plasma scenarios: (a) vector-polarized 3 He and D pellets are injected into a hot hydrogen plasma to produce thermonuclear reactions, and (b) a tensor-polarized deuterium pellet is injected into an L-mode hydrogen background plasma that includes unpolarized 3 He neutral beam injection. Ideal CFP signals in both scenarios show substantial pitch sensitivity to polarization for 14.7 MeV proton detection at a poloidal angle of − 56 ∘ (on the outer wall in the ion ∇ B direction), and strong sensitivity to polarization for 3.6 MeV alpha flux detection by an array of poloidal detectors. Energy-resolved measurements of 14.7 MeV protons are also sensitive to the degree of polarization for the − 56 ∘ port in the beam-plasma scenario. A realistic assessment of CFP signals in the thermonuclear scenario show count rates in the range of 2 × 10 4 cps for pitch-resolved proton detection and 2 × 10 5 cps for alpha flux measurements. Reduced chi-squared χ r 2 calculations show polarization lifetime measurements are feasible for either proton or alpha detection of both enhanced or suppressed polarization for the thermonuclear scenario. Measurements of gamma rays produced in the weak D + 3 He → γ + 5 Li branch complement the CFP measurements.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Asymmetric structure of five and six membered DNA hairpin loops

The tertiary structure of nucleic acid hairpins was elucidated by means of the accessibility of the single-strand-specific nuclease from mung bean. This molecular probe has proven especially useful in determining details of the structural arrangement of the nucleotides within a loop. In this study 3'-labeling is introduced to complement previously used 5'-labeling in order to assess and to exclude possible artifacts of the method. Both labeling procedures result in mutually consistent cleavage patterns. Therefore, methodological artifacts can be excluded and the potential of the nuclease as structural probe is increased. DNA hairpins with five and six membered loops reveal an asymmetric loop structure with a sharp bend of the phosphate-ribose backbone between the second and third nucleotide on the 3'-side of a loop. These hairpin structures differ from smaller loops with 3 or 4 members, which reveal this type of bend between the first and second 3' nucleotide, and resemble with respect to the asymmetry anticodon loops of tRNA.

NASA Discipline Exobiology↗

Real time pipelined system for forming the sum of products in the processing of video data

A 3-by-3 convolver utilizes 9 binary arithmetic units connected in cascade for multiplying 12-bit binary pixel values P sub i which are positive or two's complement binary numbers by 5-bit magnitide (plus sign) weights W sub i which may be positive or negative. The weights are stored in registers including the sign bits. For a negative weight, the one's complement of the pixel value to be multiplied is formed at each unit by a bank of 17 exclusive or gates G sub i under control of the sign of the corresponding weight W sub i, and a correction is made by adding the sum of the absolute values of all the negative weights for each 3-by-3 kernel. Since this correction value remains constant as long as the weights are constant, it can be precomputed and stored in a register as a value to be added to the product PW of the first arithmetic unit.

Wilcox, Brian↗

Structures of Neisseria gonorrhoeae MtrR-operator complexes reveal molecular mechanisms of DNA recognition and antibiotic resistance-conferring clinical mutations

Abstract Mutations within the mtrR gene are commonly found amongst multidrug resistant clinical isolates of Neisseria gonorrhoeae, which has been labelled a superbug by the Centers for Disease Control and Prevention. These mutations appear to contribute to antibiotic resistance by interfering with the ability of MtrR to bind to and repress expression of its target genes, which include the mtrCDE multidrug efflux transporter genes and the rpoH oxidative stress response sigma factor gene. However, the DNA-recognition mechanism of MtrR and the consensus sequence within these operators to which MtrR binds has remained unknown. In this work, we report the crystal structures of MtrR bound to the mtrCDE and rpoH operators, which reveal a conserved, but degenerate, DNA consensus binding site 5′-MCRTRCRN4YGYAYGK-3′. We complement our structural data with a comprehensive mutational analysis of key MtrR-DNA contacts to reveal their importance for MtrR-DNA binding both in vitro and in vivo. Furthermore, we model and generate common clinical mutations of MtrR to provide plausible biochemical explanations for the contribution of these mutations to multidrug resistance in N. gonorrhoeae. Collectively, our findings unveil key biological mechanisms underlying the global stress responses of N. gonorrhoeae.

59 BASIC BIOLOGICAL SCIENCES↗

OGO-F-02 data analysis

The OGO-VI satellite, which was launched on June 5, 1969 carried a complement of twenty-six experiments. One of those instruments, the F-02 package, was a cylindrical Langmuir probe experiment whose primary purpose was to measure ionospheric electron temperatures and densities. This report briefly describes the F-02 experiment itself, outlines the computer programs developed to analyze the raw data, and gives a summary of the scientific information obtained, with the aid of this experiment.

Nagy, A. F.↗

Design and performance characterisation of the HAPG von Hámos Spectrometer at the High Energy Density Instrument of the European XFEL

The von Hámos spectrometer setup at the HED instrument of the European XFEL is described in detail. The spectrometer is designed to be operated primarily between 5 and 15 keV to complement the operating photon energy range of the HED instrument. Four Highly Annealed Pyrolitic Graphite (HAPG) crystals are characterised with thicknesses of 40 μm or 100 μm and radius-of-curvature 50 mm or 80 mm, in conjunction with either an ePix100 or Jungfrau detector. The achieved resolution with the 50 mm crystals, operated between 6.5 and 9 keV, matches that reported previously: ~8 eV for a thickness of 40 μm, whereas, with an 80 mm crystal of thickness 40 μm, the resolution exceeds that expected. Namely, a resolution of 2 eV is demonstrated between 5–6 keV implying a resolving power of 2800. Therefore, we posit that flatter HAPG crystals, with their high reflectivity and improved resolving power, are a powerful tool for hard x-ray scattering and emission experiments allowing unprecedented measurements of collective scattering in a single shot.

47 OTHER INSTRUMENTATION↗

The role of earth-based observations of asteroids during the next decade

Present reconnaissance studies of asteroids shift ground based programs to more specialized, intensive studies of selected individual bodies and special classes. Two powerful techniques--radar and mid-IR spectroscopy--have yet to be widely applied to asteroids; high priority should be given to: (1) search programs with a large Schmidt telescope (especially for Mars- and Earth-approaching bodies); (2) a moderate resolution visible and near-IR spectrophotometric survey of at least half the asteroids; (3) high resolution spectrophotometry and radiometry of unusual objects; (4) radar studies of representative main belt asteroids; and (5) application of the full complement of astrophysical techniques to objects of high scientific interest and to potential space mission targets. The infrared astronomical satellite also has high potential for contributing to asteroid science.

Chapman, C. R.↗

Supersonic Aerodynamic Characteristics of Proposed Mars '07 Smart Lander Configurations

Supersonic aerodynamic data were obtained for proposed Mars '07 Smart Lander configurations in NASA Langley Research Center's Unitary Plan Wind Tunnel. The primary objective of this test program was to assess the supersonic aerodynamic characteristics of the baseline Smart Lander configuration with and without fixed shelf/tab control surfaces. Data were obtained over a Mach number range of 2.3 to 4.5, at a free stream Reynolds Number of 1 x 10(exp 6) based on body diameter. All configurations were run at angles of attack from -5 to 20 degrees and angles of sideslip of -5 to 5 degrees. These results were complemented with computational fluid dynamic (CFD) predictions to enhance the understanding of experimentally observed aerodynamic trends. Inviscid and viscous full model CFD solutions compared well with experimental results for the baseline and 3 shelf/tab configurations. Over the range tested, Mach number effects were shown to be small on vehicle aerodynamic characteristics. Based on the results from 3 different shelf/tab configurations, a fixed control surface appears to be a feasible concept for meeting aerodynamic performance metrics necessary to satisfy mission requirements.

Murphy, Kelly J.↗

Sea Ice Extents Continue to Set New Records: Arctic, Antarctic, and Global Results

The multi-channel satellite passive-microwave record of Earth’s sea ice coverage, extending back to the late 1970s, has long revealed declining sea ice coverage in the Arctic but through 2015 revealed an overall increase rather than decrease in Antarctic sea ice coverage. Following major decreases in Antarctic sea ice since 2015, the 42-year 1979-2020 satellite dataset now shows losses in sea ice coverage in both hemispheres, and this is convincingly demonstrated by the enumeration of monthly and yearly record high and record low sea ice extents experienced over the course of the 42 years. In fact, one of the most convincing statistics on the declining Arctic sea ice cover is the fact that since 1986 the Arctic has not experienced a single monthly record high sea ice extent in any month but has experienced 93 monthly record lows. In contrast, all 12 calendar months have their 42-year Antarctic monthly record high sea ice extents in the period 2007-2015, while 8 of the 12 calendar months have had Antarctic record lows since 2015. Globally, every calendar month has registered a new monthly record low within the past 5 years. These results are complemented (and somewhat tempered) by quantification of the range of monthly and yearly sea ice extent values over the 42 years. For instance, although the Arctic’s lowest September monthly average sea ice extent (in 2012) is 53% lower than its highest September monthly average sea ice extent (in 1980), the other months have far smaller percent differences between their lowest and highest Arctic values. For yearly average sea ice extents, the Arctic’s lowest value (in 2020) is 18% lower than its highest value (in 1982), the Antarctic’s lowest value (in 2017) is 16% lower than its highest value (in 2014), and the global lowest value (in 2019) is only 12% lower than its highest value (in 1982).

sea ice↗

A multisensor analysis of Nimbus-5 data recorded on 22 January 1973

The Nimbus 5 meteorological satellite has a full complement of radiation sensors. Data from these sensors were analyzed and intercompared for orbits 569 and 570. The electrically-scanning microwave radiometer (19.35-GHz region) delineated rain areas over the ocean off the U.S. east coast, in good agreement with radar imagery, and permitted the estimation of rainfall rates in this region. Residual ground water, from abnormal rainfall in the lower Mississippi Valley, was indicated under clear sky conditions by soil brightness temperature values in the Nimbus 5 electrically scanning microwave radiometer and U.S. Air Force Data Acquisition and Processing Program infrared data. The temperature-humidity infrared radiometer (6.7 micron and 11 micron) showed the height and spatial configuration of frontal clouds along the east coast and outlined the confluence of a polar jet stream with a broad subtropical jet stream along the U.S. Gulf Coast. Temperature profiles from three vertical temperature sounders are found to be in good agreement with related radiosonde ascents along orbit 569 from the subtropics to the Arctic Circle.

Allison, L. J.↗

Storm-Associated Microwave Radiometric Signatures in the Frequency Range of 90-220 GHz

Radiometric measurements were made by a millimeter-wave imaging radiometer (MIR) at the frequencies of 89, 150, 183.3 +/- 1, 183.3 +/- 3, 183.3 +/- 7, and 220 GHz aboard the NASA ER-2 aircraft at an altitude of about 20 km over two rainstorms: one in the western Pacific Ocean on 19 January 1993 and another in southern Florida on 5 October 1993. These measurements were complemented by nearly simultaneous observations by other sensors aboard the same aircraft and another aircraft flying along the same path. Analysis of data from these measurements, aided by radiative transfer and radar reflectivity calculations of hydrometeor profiles, which arc generated by a general cloud ensemble model, demonstrates the utility of these frequencies for studying the structure of frozen hydrometeors associated with storms. Particular emphasis is placed on the three water vapor channels near 183.3 GHz. Results show that the radiometric signatures measured by these channels over the storm-associated scattering media bear a certain resemblance to those previously observed over a clear and fairly dry atmosphere with a cold ocean background. Both of these atmospheric conditions are characterized by a small amount of water vapor above a cold background. Radiative transfer calculations were made at these water vapor channels for a number of relative humidity profiles characterizing dry atmospheres over an ocean surface. The results are compared with the measurements to infer some characteristics of the environment near the scattering media. Furthermore, radiometric signatures from these channels display unique features for towering deep convective cells that could be used to identify the presence of such cells in storms.

Wang, James R.↗

The Primordial Inflation Explorer (PIXIE)

The Primordial Inflation Explorer is an Explorer-class mission to open new windows on the early universe through measurements of the polarization and absolute frequency spectrum of the cosmic microwave background. PIXIE will measure the gravitational-wave signature of primordial inflation through its distinctive imprint in linear polarization, and characterize the thermal history of the universe through precision measurements of distortions in the blackbody spectrum. PIXIE uses an innovative optical design to achieve background-limited sensitivity in 400 spectral channels spanning over 7 octaves in frequency from 30 GHz to 6 THz (1 cm to 50 micron wavelength). Multi-moded non-imaging optics feed a polarizing Fourier Transform Spectrometer to produce a set of interference fringes, proportional to the difference spectrum between orthogonal linear polarizations from the two input beams. Multiple levels of symmetry and signal modulation combine to reduce systematic errors to negligible levels. PIXIE will map the full sky in Stokes I, Q, and U parameters with angular resolution 2.6 degrees and sensitivity 70 nK per 1degree square pixel. The principal science goal is the detection and characterization of linear polarization from an inflationary epoch in the early universe, with tensor-to-scalar ratio r < 10(exp. -3) at 5 standard deviations. The PIXIE mission complements anticipated ground-based polarization measurements such as CMBS4, providing a cosmic-variance-limited determination of the large-scale E-mode signal to measure the optical depth, constrain models of reionization, and provide a firm detection of the neutrino mass (the last unknown parameter in the Standard Model of particle physics). In addition, PIXIE will measure the absolute frequency spectrum to characterize deviations from a blackbody with sensitivity 3 orders of magnitude beyond the seminal COBE/FIRAS limits. The sky cannot be black at this level; the expected results will constrain physical processes ranging from inflation to the nature of the first stars and the physical conditions within the interstellar medium of the Galaxy. We describe the PIXIE instrument and mission architecture required to measure the CMB to the limits imposed by astrophysical foregrounds.

Kogut, Alan↗

A multi-sensor analysis of Nimbus 5 data on 22 January 1973

The Nimbus 5 meteorological satellite carried aloft a full complement of radiation sensors, the data from which were analyzed and intercompared during orbits 569-570 on 22 January 1973. The electrically scanning microwave radiometer (ESMR) which sensed passive microwave radiation in the 19.35 GHz region, delineated rain areas over the ocean off the U.S. east coast, in good agreement with WSR-57 and FPS-77 radar imagery and permitted the estimation of rainfall rates in this region. Residual ground water in the lower Mississippi Valley, which resulted from abnormal rainfall in previous months, was indicated under clear sky conditions by soil brightness temperature values in the Nimbus 5 ESMR and U.S. Air Force Data Acquisition and Processing Program (DAPP) IR data. The temperature-humidity infrared radiometer showed the height and spatial configuration of frontal clouds along the east coast and outlined the confluence of a polar jet stream with a broad sub-tropical jet stream along the U.S. Gulf Coast. Temperature profiles from three vertical temperature sounders, the infrared temperature profile radiometer (ITPR), the Nimbus E microwave spectrometer (NEMS) and the selective chopper radiometer (SCR) were found to be in good agreement with related radiosonde ascents along orbit 569 from the sub-tropics to the Arctic Circle.

Allison, L. J.↗