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At least 19 records

Framework of compressive sensing and data compression for 4D-STEM

Four-dimensional Scanning Transmission Electron Microscopy (4D-STEM) is a powerful technique for high-resolution and high-precision materials characterization at multiple length scales, including the characterization of beam-sensitive materials. However, the field of view of 4D-STEM is relatively small, which in absence of live processing is limited by the data size required for storage. Furthermore, the rectilinear scan approach currently employed in 4D-STEM places a resolution- and signal-dependent dose limit for the study of beam sensitive materials. Improving 4D-STEM data and dose efficiency, by keeping the data size manageable while limiting the amount of electron dose, is thus critical for broader applications. Here we introduce a general method for reconstructing 4D-STEM data with subsampling in both real and reciprocal spaces at high fidelity. The approach is first tested on the subsampled datasets created from a full 4D-STEM dataset, and then demonstrated experimentally using random scan in real-space. The same reconstruction algorithm can also be used for compression of 4D-STEM datasets, leading to a large reduction (100 times or more) in data size, while retaining the fine features of 4D-STEM imaging, for crystalline samples.

4D-STEM↗

Application of Compressive Sensing for Gravitational Microlensing Events

Compressive sensing is a novel mathematical technique for simultaneous data acquisition and compression. This technique is particularly apt for time-series photometric measurements. In this work we apply compressive sensing to time-series photometric measurements specifically obtained due to gravitational microlensing events. We show through simulation modelling the error sensitivity for detecting microlensing event parameters. Particularly, we show the relation of the amount of error and its impact on the microlensing parameters of interest. We derive statistical error bounds to apply those as a baseline for analyzing the effectiveness of compressive sensing application. Our results conclude that for single and binary microlensing events we can obtain error less than 1% over a 3-pixel radius of the center of the microlensing star by using 25% Nyquist rate measurements.

Compressive Sensing↗

Application of Compressive Sensing to Gravitational Microlensing Experiments

Compressive Sensing is an emerging technology for data compression and simultaneous data acquisition. This is an enabling technique for significant reduction in data bandwidth, and transmission power and hence, can greatly benefit spaceflight instruments. We apply this process to detect exoplanets via gravitational microlensing. We experiment with various impact parameters that describe microlensing curves to determine the effectiveness and uncertainty caused by Compressive Sensing. Finally, we describe implications for spaceflight missions.

Compressive Sensing↗

High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques

Abstract Here we show that compressive sensing allows 4‐dimensional (4‐D) STEM data to be obtained and accurately reconstructed with both high‐speed and reduced electron fluence. The methodology needed to achieve these results compared to conventional 4‐D approaches requires only that a random subset of probe locations is acquired from the typical regular scanning grid, which immediately generates both higher speed and the lower fluence experimentally. We also consider downsampling of the detector, showing that oversampling is inherent within convergent beam electron diffraction (CBED) patterns and that detector downsampling does not reduce precision but allows faster experimental data acquisition. Analysis of an experimental atomic resolution yttrium silicide dataset shows that it is possible to recover over 25 dB peak signal‐to‐noise ratio in the recovered phase using 0.3% of the total data. Lay abstract : Four‐dimensional scanning transmission electron microscopy (4‐D STEM) is a powerful technique for characterizing complex nanoscale structures. In this method, a convergent beam electron diffraction pattern (CBED) is acquired at each probe location during the scan of the sample. This means that a 2‐dimensional signal is acquired at each 2‐D probe location, equating to a 4‐D dataset. Despite the recent development of fast direct electron detectors, some capable of 100kHz frame rates, the limiting factor for 4‐D STEM is acquisition times in the majority of cases, where cameras will typically operate on the order of 2kHz. This means that a raster scan containing 256^2 probe locations can take on the order of 30s, approximately 100‐1000 times longer than a conventional STEM imaging technique using monolithic radial detectors. As a result, 4‐D STEM acquisitions can be subject to adverse effects such as drift, beam damage, and sample contamination. Recent advances in computational imaging techniques for STEM have allowed for faster acquisition speeds by way of acquiring only a random subset of probe locations from the field of view. By doing this, the acquisition time is significantly reduced, in some cases by a factor of 10‐100 times. The acquired data is then processed to fill‐in or inpaint the missing data, taking advantage of the inherently low‐complex signals which can be linearly combined to recover the information. In this work, similar methods are demonstrated for the acquisition of 4‐D STEM data, where only a random subset of CBED patterns are acquired over the raster scan. We simulate the compressive sensing acquisition method for 4‐D STEM and present our findings for a variety of analysis techniques such as ptychography and differential phase contrast. Our results show that acquisition times can be significantly reduced on the order of 100‐300 times, therefore improving existing frame rates, as well as further reducing the electron fluence beyond just using a faster camera.

Robinson, Alex W.↗

Compressive Sensing Application for Transient Photometric Measurements

Compressive Sensing (CS) is a mathematical theory for simultaneous data acquisition and compression. Natural phenomena may be sparse in some physical or temporal domain. If we exploit this sparsity by applying the technique of CS to obtain information, how do our measurements change as a function of domain and measurement systematics? What are the specific implications for the science and for the sensing infrastructure? In this talk, we will discuss the generalized systematic effects consequent to the application of CS to time-series photometric measurements. We assess implications for observability, sparsification, and information loss in the detection, retrieval and reconstruction process. To study time-series photometry, we explore the field of gravitational microlensing. A source star, typically in the galactic bulge, gets microlensed when there is a precise alignment of a lensing star and its planetary system, with the source star. The microlensed source star changes in flux magnification as the lensing system crosses the precise path of alignment, resulting in a microlensing curve in time domain. A high-cadence, high-resolution system, which uses low power and bandwidth is essential to obtain valuable science measurements. Hence, we discuss application of CS to gravitational microlensing data sets, which in turn can be generalized to any time-ordered photometric measurements.

Asmita Abhay Korde↗

Compressive Sensing Based Space Flight Instrument Constellation for Measuring Gravitational Microlensing Parallax

In this work, we provide a compressive sensing architecture for implementing on a space based observatory for detecting transient photometric parallax caused by gravitational microlensing events. Compressive sensing (CS) is a simultaneous data acquisition and compression technique, which can greatly reduce on-board resources required for space flight data storage and ground transmission. We simulate microlensing parallax observations using a space observatory constellation, based on CS detectors. Our results show that average CS error is less than 0.5% using 25% Nyquist rate samples. The error at peak magnification time is significantly lower than the error for distinguishing any two microlensing parallax curves at their peak magnification. Thus, CS is an enabling technology for detecting microlensing parallax, without causing any loss in detection accuracy.

compressive sensing↗

Application of Compressive Sensing to Gravitational Microlensing Data and Implications for Miniaturized Space Observatories

Compressive Sensing is a technique for simultaneous acquisition and compression of data that is sparse or can be made sparse in some domain. It is currently under intense development and has been profitably employed for industrial and medical applications. We here describe the use of this technique for the processing of astronomical data. We outline the procedure as applied to exoplanet gravitational microlensing and analyze measurement results and uncertainty values. We describe implications for on-spacecraft data processing for space observatories. Our findings suggest that application of these techniques may yield significant, enabling benefits especially for power and volume-limited space applications such as miniaturized or micro-constellation satellites.

Gravitational Microlensing↗

Application of Compressive Sensing to Gravitational Microlensing Data and Implications for Miniaturized Space Observatories

Compressive Sensing is a technique for simultaneous acquisition and compression of data that is sparse or can be made sparse in some domain. It is currently under intense development and has been profitably employed for industrial and medical applications. We here describe the use of this technique for the processing of astronomical data. We outline the procedure as applied to exoplanet gravitational microlensing and analyze measurement results and uncertainty values. We describe implications for on-spacecraft data processing for space observatories. Our findings suggest that application of these techniques may yield significant, enabling benefits especially for power and volume-limited space applications such as miniaturized or micro-constellation satellites.

Compressive Sensing↗

Compressive Sensing Based Data Acquisition Architecture for Transient Stellar Events in Crowded Star Fields

Compressive sensing is a mathematical technique for simultaneous data acquisition and compression. In this work, we show a CS based architecture for acquiring and reconstructing transient stellar events. This architecture recon-structs a differenced image itself, eliminating the need for any sparse domain transforms, otherwise required for traditional CS reconstruction. The resulting reconstructed differenced image is of critical importance as the information required for generating a time-series photometric light curve is obtained only from a differenced image. Hence, reconstructing a crowded star spatial image, followed by differencing is wasteful. This architecture eliminates the need to 1.) transform an image to a sparse domain, 2.) Reconstruct a dense field, and then apply differencing on the image to obtain the image of critical value. We study the case of microlensing to depict a star source experiencing magnification in time. Our results show that this architecture is able to reconstruct star source magnitudes with magnification factors greater than 1 for clean images with error less than 2% using only 10% of the Nyquist rate samples.

Compressive Sensing, Data acquisition, Image diffe↗

COxSwAIN: Compressive Sensing for Advanced Imaging and Navigation

The COxSwAIN project focuses on building an image and video compression scheme that can be implemented in a small or low-power satellite. To do this, we used Compressive Sensing, where the compression is performed by matrix multiplications on the satellite and reconstructed on the ground. Our paper explains our methodology and demonstrates the results of the scheme, being able to achieve high quality image compression that is robust to noise and corruption.

Kurwitz, Richard↗

Compressive Sensing Based Data Acquisition Architecture for Transient Stellar Events in Crowded Star Fields

Compressive sensing is a mathematical technique for simultaneous data acquisition and compression. In this work, we show a CS based architecture for acquiring and reconstructing transient stellar events. This architecture reconstructs a differenced image itself, eliminating the need for any sparse domain transforms, otherwise required for traditional CS reconstruction. The resulting reconstructed differenced image is of critical importance as the information required for generating a time-series photometric light curve is obtained only from a differenced image. Hence, reconstructing a crowded star spatial image, followed by differencing is wasteful. This architecture eliminates the need to 1.) transform an image to a sparse domain, 2.) Reconstruct a dense field, and then apply differencing on the image to obtain the image of critical value. We study the case of microlensing to depict a star source experiencing magnification in time. Our results show that this architecture is able to reconstruct star source magnitudes with magnification factors greater than 1 for clean images with error less than 2% using only 10% of the Nyquist rate samples.

Asmita Korde-Patel↗

Compressive Sensing Based Data Acquisition Architecture for Transient Stellar Events in Crowded Star Fields

Compressive sensing is a mathematical technique for simultaneous data acquisition and compression. In this work, we show a CS based architecture for acquiring and reconstructing transient stellar events. This architecture recon-structs a differenced image itself, eliminating the need for any sparse domain transforms, otherwise required for traditional CS reconstruction. The resulting reconstructed differenced image is of critical importance as the information required for generating a time-series photometric light curve is obtained only from a differenced image. Hence, reconstructing a crowded star spatial image, followed by differencing is wasteful. This architecture eliminates the need to 1.) transform an image to a sparse domain, 2.) Reconstruct a dense field, and then apply differencing on the image to obtain the image of critical value. We study the case of microlensing to depict a star source experiencing magnification in time. Our results show that this architecture is able to reconstruct star source magnitudes with magnification factors greater than 1 for clean images with error less than 2% using only 10% of the Nyquist rate samples.

Asmita Korde-patel↗

$\mathrm{SIM}$-$\mathrm{STEM}$ $\mathrm{Lab}$: Incorporating Compressed Sensing Theory for Fast STEM Simulation

We report recently it has been shown that precise dose control and an increase in the overall acquisition speed of atomic resolution scanning transmission electron microscope (STEM) images can be achieved by acquiring only a small fraction of the pixels in the image experimentally and then reconstructing the full image using an inpainting algorithm. In this paper, we apply the same inpainting approach (a form of compressed sensing) to simulated, sub-sampled atomic resolution STEM images. We find that it is possible to significantly sub-sample the area that is simulated, the number of g-vectors contributing the image, and the number of frozen phonon configurations contributing to the final image while still producing an acceptable fit to a fully sampled simulation. Here we discuss the parameters that we use and how the resulting simulations can be quantifiably compared to the full simulations. As with any Compressed Sensing methodology, care must be taken to ensure that isolated events are not excluded from the process, but the observed increase in simulation speed provides significant opportunities for real time simulations, image classification and analytics to be performed as a supplement to experiments on a microscope to be developed in the future

47 OTHER INSTRUMENTATION↗

Self‐gated, dynamic contrast‐enhanced magnetic resonance imaging with compressed‐sensing reconstruction for evaluating endothelial permeability in the aortic root of atherosclerotic mice

High‐risk atherosclerotic plaques are characterized by active inflammation and abundant leaky microvessels. We present a self‐gated, dynamic contrast‐enhanced magnetic resonance imaging (DCE‐MRI) acquisition with compressed sensing reconstruction and apply it to assess longitudinal changes in endothelial permeability in the aortic root of Apoe −/− atherosclerotic mice during natural disease progression. Twenty‐four, 8‐week‐old, female Apoe −/− mice were divided into four groups (n = 6 each) and imaged with self‐gated DCE‐MRI at 4, 8, 12, and 16 weeks after high‐fat diet initiation, and then euthanized for CD68 immunohistochemistry for macrophages. Eight additional mice were kept on a high‐fat diet and imaged longitudinally at the same time points. Aortic‐root pseudo‐concentration curves were analyzed using a validated piecewise linear model. Contrast agent wash‐in and washout slopes ( b 1 and b 2 ) were measured as surrogates of aortic root endothelial permeability and compared with macrophage density by immunohistochemistry. b 2 , indicating contrast agent washout, was significantly higher in mice kept on an high‐fat diet for longer periods of time ( p = 0.03). Group comparison revealed significant differences between mice on a high‐fat diet for 4 versus 16 weeks ( p = 0.03). Macrophage density also significantly increased with diet duration ( p = 0.009). Spearman correlation between b 2 from DCE‐MRI and macrophage density indicated a weak relationship between the two parameters (r = 0.28, p = 0.20). Validated piecewise linear modeling of the DCE‐MRI data showed that the aortic root contrast agent washout rate is significantly different during disease progression. Further development of this technique from a single‐slice to a 3D acquisition may enable better investigation of the relationship between in vivo imaging of endothelial permeability and atherosclerotic plaques' genetic, molecular, and cellular makeup in this important model of disease.

Calcagno, Claudia↗

Thermal field reconstruction and compressive sensing using proper orthogonal decomposition

Model order reduction allows critical information about sensor placement and experiment design to be distilled from raw fluid mechanics simulation data. In many cases, sensed information in conjunction with reduced order models can also be used to regenerate full field variables. In this paper, a proper orthogonal decomposition (POD) inferencing method is extended to the modeling and compressive sensing of temperature, a scalar field variable. The method is applied to a simulated, critically stable, incompressible flow over a heated cylinder (Re = 1000) with Prandtl number varying between 0.001 and 50. The model is trained on pressure and temperature data from simulations. Field reconstructions are then generated using data from selected sensors and the POD model. Finally, the reconstruction error is evaluated across all Prandtl numbers for different numbers of retained modes and sensors. The predicted trend of increasing reconstruction accuracy with decreasing Prandtl number is confirmed and a Prandtl number/sensor count error matrix is presented.

Matulis, John↗

Compressed sensing methods with applications to advanced air sampling

Environmental sampling methods developed by the Savannah River National Laboratory (SRNL) employ collectors with sorbent media tubes set at various locations to collect airborne emissions. Laboratory analyses of these tubes results in one-dimensional signals regarding what chemicals are being released and transported within the atmosphere. The analysis process is time consuming especially when analyzing a full year’s worth of tubes (hourly sample collection results in nearly 9,000 tubes per year). Using a signal processing method such as compressed sensing allows for recreation of the full signal while greatly reducing the number of analyzed samples required. Due to the sparsity of data retrieved from the air tubes, it is possible to use measurements a fraction of the size of the original data to gain much of the same information. This would improve the overall time and cost of analysis when modeling one-dimensional sampling signals.

54 ENVIRONMENTAL SCIENCES↗

Compressed Sensing Methods with Applications to Advanced Air Sampling [Poster]

Environmental sampling methods developed by the Savannah River National Laboratory (SRNL) employ collectors with sorbent media tubes set at various locations to collect airborne emissions. Laboratory analyses of these tubes results in one-dimensional signals regarding what chemicals are being released and transported within the atmosphere. The analysis process is time consuming especially when analyzing a full year’s worth of tubes (hourly sample collection results in nearly 9,000 tubes per year). Using a signal processing method such as compressed sensing allows for recreation of the full signal while greatly reducing the number of analyzed samples required. Due to the sparsity of data retrieved from the air tubes, it is possible to use measurements a fraction of the size of the original data to gain much of the same information. This would improve the overall time and cost of analysis when modeling one-dimensional sampling signals.

Campbell, Cassidy [Savannah River National Laborat↗