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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2026

Data for FUN-PROSE: A Deep Learning Approach to Predict Condition-Specific Gene Expression in Fungi

mRNA levels of all genes in a genome is a critical piece of information defining the overall state of the cell in a given environmental condition. Being able to reconstruct such condition-specific expression in fungal genomes is particularly important to metabolically engineer these organisms to produce desired chemicals in industrially scalable conditions. Most previous deep learning approaches focused on predicting the average expression levels of a gene based on its promoter sequence, ignoring its variation across different conditions. Here we present FUN-PROSE—a deep learning model trained to predict differential expression of individual genes across various conditions using their promoter sequences and expression levels of all transcription factors. We train and test our model on three fungal species and get the correlation between predicted and observed condition-specific gene expression as high as 0.85. We then interpret our model to extract promoter sequence motifs responsible for variable expression of individual genes. We also carried out input feature importance analysis to connect individual transcription factors to their gene targets. A sizeable fraction of both sequence motifs and TF-gene interactions learned by our model agree with previously known biological information, while the rest corresponds to either novel biological facts or indirect correlations.

Genomics↗
DOE OSTI2021

Dissecting the metabolic reprogramming of maize root under nitrogen-deficient stress conditions

The growth and development of maize (Zea mays L.) largely depends on its nutrient uptake through the root. Hence, studying its growth, response, and associated metabolic reprogramming to stress conditions is becoming an important research direction. A genome-scale metabolic model (GSM) for the maize root was developed to study its metabolic reprogramming under nitrogen stress conditions. The model was reconstructed based on the available information from KEGG, UniProt, and MaizeCyc. Transcriptomics data derived from the roots of hydroponically grown maize plants were used to incorporate regulatory constraints in the model and simulate nitrogen-non-limiting (N+) and nitrogen-deficient (N-) condition. Model-predicted flux-sum variability analysis achieved 70% accuracy compared with the experimental change of metabolite levels. In addition to predicting important metabolic reprogramming in central carbon, fatty acid, amino acid, and other secondary metabolism, maize root GSM predicted several metabolites (l-methionine, l-asparagine, l-lysine, cholesterol, and l-pipecolate) playing a regulatory role in the root biomass growth. Furthermore, this study revealed eight phosphatidylcholine and phosphatidylglycerol metabolites which, even though not coupled with biomass production, played a key role in the increased biomass production under N-deficient conditions. Overall, the omics-integrated GSM provides a promising tool to facilitate stress condition analysis for maize root and engineer better stress-tolerant maize genotypes.

Plant Sciences↗
DOE OSTI2020

Highlighting the Impact of Yaw Control by Parsing Atmospheric Conditions Based on Total Variation: Preprint

Identification of atmospheric conditions within a multivariate atmospheric dataset is a necessary step in the validation of wind plant control strategies. Most often, operating conditions are characterized in terms of aggregated observations and assume that the atmosphere is 'quasi-steady'. Aggregation of observations without regard to covariance between time series discounts the dynamical nature of the atmosphere and is not sufficiently representative of wind plant operating conditions. Identification and characterization of continuous time periods with atmospheric conditions that have a high value for analysis or simulation sets the stage for more advanced model validation and the development of real-time control and operation strategies. Controlling observational data for statistical stationarity highlights significant enhancements to the power production of waked turbines under wake steering wind plant control. Considering the combined energy ratio of the turbine to which yaw offsets are prescribed as well as the waked turbine show only moderate improvements when filtering for total validation. The same quality control that highlights wake steering also serves to underpin the off-nominal operation of the controlled turbine.

17 WIND ENERGY↗
DOE OSTI2023

Voltage-Based Strategies for Preventing Battery Degradation under Diverse Fast-Charging Conditions

Maintaining safe operating conditions is a key challenge for high-performance lithium-ion battery applications. The lithium-plating reaction remains a risk during charging, but limited studies consider the highly variable charging conditions possible in commercial cells. Here we combine pseudo-2D electrochemical modeling with data visualization methods to reveal important relationships between the measurable cell voltage and difficult-to-predict Li-plating onset criteria. An extensively validated model is used to compute Li plating for thousands of multistep charging conditions spanning diverse rates, temperatures, states-of-charge, and cell aging. Here we observe an empirical cell operating voltage limit below which plating does not occur across all conditions, and this limit varies with the battery state-of-charge and aging. A model sensitivity analysis also indicates that, when comparing two charging voltage profiles, the capacity difference at 4.0 V correlates well with the difference in the plating onset capacity. These results encourage simple strategies for Li-plating prevention that are complementary to existing battery controls.

25 ENERGY STORAGE↗
DOE OSTI2021

Metabolic Interactions between Brachypodium and Pseudomonas fluorescens under Controlled Iron-Limited Conditions

Plant iron (Fe) nutritional status has a significant impact on rhizosphere microbial communities. While this effect has been attributed to alterations in the composition of root exudates, the underlying mechanisms are not known. Here, we investigated the effect of Fe deficiency on the interactions between the grass Brachypodium distachyon and the common soil bacteria Pseudomonas fluorescens SBW25. Increased phytosiderophore production was the most significant response of Brachypodium root exudation to Fe deficiency. We observed upregulated expression of phytosiderophore biosynthesis genes but lower accumulated exudate concentrations in the presence of Pseudomonas, indicating that the bacteria degrade these phytosiderophores. Pseudomonas did not produce endogenous siderophores under the low Fe conditions. Rather, the bacterial transcriptome revealed upregulation of four genes in response to Fe deficiency that contain motifs associated with cellular uptake of small molecules. Collectively, these results suggest that rhizosphere Pseudomonas fluorescens may take up phytosiderophores produced by grasses in response to Fe deficiency, and we propose target genes that may be involved. Our findings provide insight into the molecular basis for the exchange of C, N, and Fe between plants and bacteria under Fe deficient conditions. These interactions may contribute to differences in the rhizosphere microbial community structure across soil pH regimes.

Boiteau, Rene M.↗
DOE OSTI2021

A Framework for Characterizing the Initial Thermal Conditions of Light-Duty Vehicles in Response to Representative Utilization Patterns, Ambient Conditions, and Vehicle Technologies

It is widely understood that the thermal state of a light-duty vehicle at the beginning of a trip influences the vehicle performance throughout the drive cycle. Cold starts, or initial states with component temperatures near ambient conditions, are strongly correlated with reduced vehicle performance and energy efficiency and with increased emissions. Despite this understanding, there is little literature available that characterizes initial thermal states beyond empirical studies and simplified analyses of dwell times. We introduce a framework that considers vehicle activity patterns, including the previous drive event, duration of the previous dwell event, and relevant ambient conditions occurring during these events. Moreover, the framework allows for technologies to influence the prominence of cold starts and warm starts. An example application of the methodology using a powertrain model approach revealed the significance of all constituent factors: controlling for ambient conditions, the shortest dwell lengths corresponded to an average initial oil temperature of 70°C versus 23°C for the long dwell length simulations, and aggressive conditioning cycles corresponded to an average initial oil temperature of 51°C versus only 35°C for a short conditioning cycle. The coldest ambient conditions evaluated (-30°C to -10°C) produced a weighted initial oil temperature of 19°C versus 57°C for the warmest ambient conditions evaluated (30°C to 50°C). Finally, we introduce weighting factors that account for the real-world frequency of conditioning cycle and dwell length combinations. The procedure outlined may be useful for discovering real-world performance improvements associated with vehicle technologies, a topic of interest to both vehicle manufacturers and regulators.

33 ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2021

Role of Inlet Boundary Conditions on Fuel-Air Mixing at Supercritical Conditions

Advanced engine design and alternative fuels present the possibility of fuel injection at purely supercritical conditions in diesel engines and gas turbines. The complex interactions that govern this phenomenon still need significant research, particularly the boundary conditions for fuel injection are critical for accurate simulation. However, the flow inside the injector itself is often omitted to reduce the computational efforts, and thus, velocity, mass flux, or total pressure is specified at the injector exit (or domain inlet), often with simplified velocity profiles and turbulence levels. This simplified inlet boundary treatment has minimal effects on results for conventional fuel injection conditions, however, the validity of this approach at supercritical conditions has not been assessed. Comprehensive real-gas and binary fluid mixing models have been implemented for computational fluid dynamics (CFD) analysis of fuel-air mixing at supercritical conditions. The model is verified using prior CFD results from the literature. The model is used to investigate the effects of the shape of axial velocity and mass fraction profiles at the inlet boundary with the goal to improve the comparison of predictions to experimental data. Results show that the boundary conditions have a significant effect on the predictions, and none of the cases match precisely with experimental data. Furthermore, the study reveals that the physical location of the inlet boundary might be difficult to infer correctly from the experiments and highlights the need for high-quality, repeatable measurements at supercritical conditions to support the development of relevant high-fidelity models for fuel-air mixing.

02 PETROLEUM↗
DOE OSTI2022

Closed-form existence conditions for bandgap resonances in a finite periodic chain under general boundary conditions

Bragg scattering in periodic media generates bandgaps, frequency bands where waves attenuate rather than propagate. Yet, a finite periodic structure may exhibit resonance frequencies within these bandgaps. This is caused by boundary effects introduced by the truncation of the nominal infinite medium. Previous studies of discrete systems determined existence conditions for bandgap resonances, although the focus has been limited to mainly periodic chains with free–free boundaries. In this paper, we present closed-form existence conditions for bandgap resonances in discrete diatomic chains with general boundary conditions (free–free, free–fixed, fixed–free, or fixed–fixed), odd or even chain parity (contrasting or identical masses at the ends), and the possibility of attaching a unique component (mass and/or spring) at one or both ends. The derived conditions are consistent with those theoretically presented or experimentally observed in prior studies of structures that can be modeled as linear discrete diatomic chains with free–free boundary conditions. An intriguing case is a free–free chain with even parity and an arbitrary additional mass at one end of the chain. Introducing such an arbitrary mass underscores a transition among a set of distinct existence conditions, depending on the type of chain boundaries and parity. The proposed analysis is applicable to linear periodic chains in the form of lumped-parameter models, examined across the frequency spectrum, as well as continuous granular media models, or similar configurations, examined in the low-frequency regime.

Bastawrous, Mary V.↗
DOE OSTI2023

Validity condition for the local sheath impedance boundary condition and a nonlocal generalization

ICRF sheaths can cause unwanted interactions of high-power RF waves with material surfaces in magnetic fusion devices. In previous work, a local RF sheath impedance boundary condition (BC) was derived for use in ICRF codes together with a microscale (i.e., Debye or sheath width scale) model for obtaining the sheath impedance used in that BC. This local RF sheath BC matches the normal component of current and electrostatic potential across the sheath-plasma interface. Collapsing the matching conditions at the sheath-plasma interface to a BC depends on the assumption of scale separation, which can be violated when conditions along the local radius of curvature of the surface vary sufficiently rapidly. The validity condition is explored in this contribution, with special attention to the case where the magnetic field approaches being tangent to the surface. When the local sheath BC no longer applies, a non-local sheath BC is developed under the assumption of a more relaxed scale separation assumption. It is shown that the non-local sheath BC reduces to the previous local sheath BC under appropriate conditions. Furthermore, a surface-integrated sheath admittance parameter describes the 2D physics in the new BC.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2020

Necessary and sufficient conditions for resonant mixing of plane waves in elastic solids with quadratic nonlinearity

This paper studies the interactions of two plane waves in elastic solids with quadratic nonlinearity. In particular, the necessary and sufficient conditions for resonant mixing of two plane waves are derived. It is shown that the conventional resonance condition for resonant mixing of plane waves is only a necessary condition, not sufficient. Based on the newly derived necessary and sufficient conditions, resonant mixing of various types of plane waves are investigated and specific conditions for generating a resonant mixed wave are obtained for each case. These results are useful for developing nonlinear ultrasonic nondestructive evaluation techniques using the wave mixing method.

Gao, Xiang↗
DOE OSTI2020

A lithium-sulfur battery with a solution-mediated pathway operating under lean electrolyte conditions

Lithium-sulfur (Li-S) battery is one of the most promising candidates for the next generation energy storage systems. However, several barriers, including polysulfide shuttle effect, the slow solid-solid surface reaction pathway in the lower discharge plateau, and corrosion of Li anode still limit its practical applications, especially under the lean electrolyte condition required for high energy density applications. Here, we propose a solution-mediated sulfur reduction pathway to improve the capacity and reversibility of the sulfur cathode and suppress dendrite growth on the Li metal anode simultaneously. With this method, a high coulombic efficiency (99%) and stable cycle life over 100 cycles were achieved under application-relevant conditions (S loading: 6.2 mg cm-2; electrolyte to sulfur ratio: 3 mLE gs-1; sulfur weigh ratio: 72 wt%). This result is enabled by a specially designed Li2S4-rich electrolyte, in which Li2S is formed through a chemical disproportionation reaction instead of electrochemical routes. A diglyme solvent was used to obtain electrolytes with the optimum range of Li2S4 concentration. Operando X-ray absorption spectroscopy confirms the solution pathway in a practical Li-S cell. This solution pathway not only introduces a new electrolyte regime for practical Li-S batteries, but also provides a new perspective for bypassing the inefficient surface pathway for other electrochemical processes.

Wang, Hui↗