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At least 19 records

eCoral: How Electrolysis Could Restore Seawater Conditions Ideal for Coral Reefs

Coral reefs suffer from climate change, including long-term ocean acidification (OA) and warming and short-term bleaching, tropical storms, and pollution events, all of which are increasing in frequency and severity. It is urgent yet unclear how to intervene to save coral reefs. Reversal of the ocean pH to preindustrial levels could restore coral reefs to their preindustrial growth rates; however, strategies to reverse OA on environmentally relevant scales have not been established. Anecdotally, electrolysis seems to help coral reefs recover from acidification and short-term events, but few uncontrolled studies support such claims. Here, using two independent continuum simulation approaches (COMSOL and CrunchFlow), we show the effect of electrolysis on seawater chemistry relevant to coral reef survival and growth. We conclude that near the negative electrodes, the cathodes, seawater pH, supersaturation, and carbonate concentration all increase significantly. Electrolysis of seawater, therefore, can be used to restore preindustrial ocean conditions locally to save coral reefs, an approach termed eCoral here. We anticipate these simulation results to be the starting point for controlled experiments to test whether seawater electrolysis promotes coral reef growth and restoration, as these simulations predict.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Identifying management opportunities to combat climate, land, and marine threats across less climate exposed coral reefs

Conserving coral reefs is critical for maintaining marine biodiversity, protecting coastlines, and supporting livelihoods in many coastal communities. Climate change threatens coral reefs globally, but researchers have identified a portfolio of coral reefs (bioclimatic units [BCUs]) that are relatively less exposed to climate impacts and strongly connected to other coral reef systems. These reefs provide a proactive opportunity to secure a long-term future for coral reefs under climate change. To help guide local management efforts, we quantified marine cumulative human impact (CHI) from climate, marine, and land pressures (2013 and from 2008 to 2013) in BCUs and across countries tasked with BCU management. Additionally, we created a management index based on common management measures and policies for each pressure source (climate, marine, and land) to identify a country's intent and commitment to effectively manage these pressures. Twenty-two countries (79%) had increases in CHI from 2008 to 2013. Climate change pressures had the highest proportional contribution to CHI across all reefs and in all but one country (Singapore), but 18 BCUs (35%) and nine countries containing BCUs (32%) had relatively high land and marine impacts. There was a significant positive relationship between climate impact and the climate management index across countries (R 2 = 0.43, p = 0.02), potentially signifying that countries with greater climate impacts are more committed to managing them. However, this trend was driven by climate management intent in Fiji and Bangladesh. Our results can be used to guide future fine-scale analyses, national policies, and local management decisions, and our management indices reveal areas where management components can be improved. Cost-effectively managing local pressures (e.g., fishing and nutrients) in BCUs is essential for building a climate-ready future that benefits coral reefs and people.

59 BASIC BIOLOGICAL SCIENCES↗

The Use of Simulated Visible/Infrared Imager/Radiometer Suite (VIIRS) and Landsat Data Continuity Mission (LDCM) Imagery for Coral Reef Monitoring

Coral reefs are some of the most biologically rich and economically important ecosystems on Earth. Coral reefs are Earth's largest biological structures and have taken thousands of years to form. Coral reefs not only provide important habitat for many marine animals and plants, but they also provide humanity with food, jobs, chemicals, protection against storms, and life-saving pharmaceuticals. Severe bleaching events have occurred that have dramatic long-term ecological impacts to corals, including loss of reef-building corals, changes in benthic habitat, and, in some cases, changes in larval fish populations (Holden and Ledrew, 1998). Some researchers suggest that 10 percent of Earth s coral reefs have already been destroyed and that another 60 percent are in danger. Scientists have proposed that as much as 95 percent of Jamaica's reefs are dying or dead. This poster reports on a Rapid Prototyping Capability (RPC) experiment done to determine whether future NASA sensors - the Visible/Infrared Imager/Radiometer Suite (VIIRS) and Landsat Data Continuity Mission (LDCM) - could generate key data products for the Integrated Coral Reef Observation Network (ICON)/Coral Reef Early Warning System (CREWS) Decision Support Tool (DST) operated by the National Oceanic and Atmospheric Administration (NOAA).

Estep, L.↗

Missing the Reef for the Corals: Unexpected Trends Between Coral Reef Condition and the Environment at the Ecosystem Scale

It is incontrovertible that many coral reefs are in various stages of decline and may be unable to withstand the effects of global climate change, jeopardizing vital ecosystem goods and services to hundreds of millions of people around the world. An estimated 50% of the world's corals have already been lost, and those remaining may be lost by 2030 under the “business as usual” CO2 emissions scenario. However, the foundation of these predictions is a surprisingly sparse dataset, wherein ~0.01–0.1% of the world's reef area has been quantitatively surveyed. Further, the available data comprise observations at the 1–10 m scale, which are not evenly spaced across reefs, but often clustered in areas representing focused survey effort. This impedes modeling and predicting the impact of a changing environment at the ecosystem scale. Here we highlight deficiencies in our current understanding of the relationship between coral reefs and their environments. Specifically, we conduct a meta-analysis using estimates of coral cover from a variety of local surveys, quantitatively relating reef condition to a suite of biogeophysical forcing parameters. We find that readily available public data for coral cover exhibit unexpected trends (e.g., a positive correlation between coral cover and multi-year cumulative thermal stress), contrary to prevailing scientific expectations. We illustrate a significant gap in our current understanding, and thereby prediction, of coral reefs at the ecosystem scale that can only be remedied with uniform, high-density data across vast coral reef regions, such as that from remote sensing.

Eric J Hochberg↗

Learning instrument invariant characteristics for generating high-resolution global coral reef maps

Coral reefs are one of the most biologically complex and diverse ecosystems within the shallow marine environment. Unfortunately, these underwater ecosystems are threatened by a number of anthropogenic challenges, including ocean acidification and warming, overfishing, and the continued increase of marine debris in oceans. This requires a comprehensive assessment of the world's coastal environments, including a quantitative analysis on the health and extent of coral reefs and other associated marine species, as a vital Earth Science measurement. However, limitations in observational and technological capabilities inhibit global sustained imaging of the marine environment. Harmonizing multimodal data sets acquired using different remote sensing instruments presents additional challenges, thereby limiting the availability of good quality labeled data for analysis. In this work, we develop a deep learning model for extracting domain invariant features from multimodal remote sensing imagery and creating high-resolution global maps of coral reefs by combining various sources of imagery and limited hand-labeled data available for certain regions. This framework allows us to generate, for the first time, coral reef segmentation maps at 2-meter resolution, which is a significant improvement over the kilometer-scale state-of-the-art maps. Additionally, this framework doubles accuracy and IoU metrics over baselines that do not account for domain invariance.

Domain Adaptation↗

Terrestrial sedimentation impact on coral and macroalgal cover in Puerto Rico's southwest coral reefs.

The coral reefs in southwest Puerto Rico (PR) have faced coral cover reduction in the last decades due to changes in its environment that can be related to sedimentation entrance resulting from anthropogenic activities in the watershed (i.e., agriculture and urban development). The Guánica Bay and La Parguera reef platforms are two natural reserves important for recreational and fishing activities. Nonetheless, their respective coral cover has decreased dramatically. Data from a previous NASA-funded project (HICE-PR) conducted between 2014-2018 was analyzed to better understand how the terrigenous sedimentation can affect the coral reef benthic composition in Guánica Bay and La Parguera. A one-way Nested ANOVA and a Tukey's HSD analyses were applied to find differences in benthic cover composition within and among the sites and location. The preliminary results showed differences in coral cover and macroalgae cover between the platforms reefs sites. The coral cover in La Parguera was higher and averaged 11.5% compared to that of Guánica (8.6%), while the macroalgae cover followed a similar pattern. Both coral cover and macroalgae in La Parguera and Guánica varied between from 2016 to 2018 with a general trend of increased coral cover in La Parguera and increase in macroalgae in Guánica. These trends can be related to the distance to the coastline as those reefs located closer to the coastline showed a greater percentage in macroalgal cover than those located farther. Cover of macroalgae and corals at reefs located a mid-distance to the coastline varied with no definite pattern detected. These results will be further correlated with variations in water quality obtained from remotely-sensed data (patterns of chlorophyll a, total suspended sediments, vertical attenuation coefficient) to support the prediction and tracking of coral cover changes in PR's southwest region.

macroalgal↗

Mapping the Rainforest of the Sea: Global Coral Reef Maps for Global Conservation

Coral reefs are the center of marine biodiversity, yet are under threat with an estimated 60% of coral reef habitats considered at risk by the World Resources Institute. The location and extent of coral reefs in the world are the basic information required for resource management and as a baseline for monitoring change. A NASA sponsored partnership between remote sensing scientists, international agencies and NGOs, has developed a new generation of global reef maps based on data collected by satellites. The effort, dubbed the Millennium Coral Reef Map aims to develop new methods for wide distribution of voluminous satellite data of use to the conservation and management communities. We discuss the tradeoffs between remote sensing data sources, mapping objectives, and the needs for conservation and resource management. SeaWiFS data were used to produce a composite global shallow bathymetry map at 1 km resolution. Landsat 7/ETM+ data acquisition plans were modified to collect global reefs and new operational methods were designed to generate the firstever global coral reef geomorphology map. We discuss the challenges encountered to build these databases and in implementing the geospatial data distribution strategies. Conservation applications include a new assessment of the distribution of the world s marine protected areas (UNEPWCMC), improved spatial resolution in the Reefs at Risk analysis for the Caribbean (WRI), and a global basemap for the Census of Marine Life's OBIS database. The Millennium Coral Reef map and digital image archive will pay significant dividends for local and regional conservation projects around the globe. Complete details of the project are available at http://eol.jsc.nasa.gov/reefs.

Robinson, Julie A.↗

Sponge exhalent metabolites influence coral reef picoplankton dynamics

Coral reef sponges efficiently take up particulate and dissolved organic matter (DOM) from the water column and release compounds such as nucleosides, amino acids, and other dissolved metabolites to the surrounding reef via their exhalent seawater, but the influence of this process on reef picoplankton and nutrient processing is relatively unexplored. Here we examined the impact of sponge exhalent on the reef picoplankon community and subsequent alterations to the reef dissolved metabolite pool. We exposed reef picoplankton communities to a sponge exhalent water mixture (Niphates digitalis and Xestospongia muta) or filtered reef seawater (control) in closed, container-based dark incubations. We used 16S rRNA gene sequencing and flow cytometry-based cell counts to examine the picoplankton community and metabolomics and other analyses to examine the dissolved metabolite pool. The initial sponge exhalent was enriched in adenosine, inosine, chorismate, humic-like and amino acid-like components, and ammonium. Following 48 h of exposure to sponge exhalent, the picoplankton differed in composition, were reduced in diversity, showed doubled (or higher) growth efficiencies, and harbored increased copiotrophic and denitrifying taxa (Marinomonas, Pontibacterium, Aliiroseovarius) compared to control, reef-water based incubations. Alongside these picoplankton alterations, the sponge treatments, relative to seawater controls, had decreased adenosine, inosine, tryptophan, and ammonium, metabolites that may support the observed higher picoplankton growth efficiencies. Sponge treatments also had a net increase in several monosaccharides and other metabolites including anthranilate, riboflavin, nitrite, and nitrate. Our work demonstrates a link between sponge exhalent-associated metabolites and the picoplankton community, with exhalent water supporting an increased abundance of efficient, copiotrophic taxa that catabolize complex nutrients. The copiotrophic taxa were often different from those observed in previous algae and coral studies. These results have implications for better understanding the multifaceted role of sponges on picoplankton biomass with subsequent potential impacts to coral and other planktonic feeders in oligotrophic reef environments.

59 BASIC BIOLOGICAL SCIENCES↗

NeMO-Net: The Neural Multi-Modal Observation and Training Network for Global Coral Reef Assessment

In the past decade, coral reefs worldwide have experienced unprecedented stresses due to climate change, ocean acidification, and anthropomorphic pressures, instigating massive bleaching and die-off of these fragile and diverse ecosystems. Furthermore, remote sensing of these shallow marine habitats is hindered by ocean wave distortion, refraction and optical attenuation, leading invariably to data products that are often of low resolution and signal-to-noise (SNR) ratio. However, recent advances in UAV and Fluid Lensing technology have allowed us to capture multispectral 3D imagery of these systems at sub-cm scales from above the water surface, giving us an unprecedented view of their growth and decay. Exploiting the fine-scaled features of these datasets, machine learning methods such as MAP, PCA, and SVM can not only accurately classify the living cover and morphology of these reef systems (below 8 percent error), but are also able to map the spectral space between airborne and satellite imagery, augmenting and improving the classification accuracy of previously low-resolution datasets. We are currently implementing NeMO-Net, the first open-source deep convolutional neural network (CNN) and interactive active learning and training software to accurately assess the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology. NeMO-Net will be built upon the QGIS platform to ingest UAV, airborne and satellite datasets from various sources and sensor capabilities, and through data-fusion determine the coral reef ecosystem makeup globally at unprecedented spatial and temporal scales. To achieve this, we will exploit virtual data augmentation, the use of semi-supervised learning, and active learning through a tablet platform allowing for users to manually train uncertain or difficult to classify datasets. The project will make use of Pythons extensive libraries for machine learning, as well as extending integration to GPU and High-End Computing Capability (HECC) on the Pleiades supercomputing cluster, located at NASA Ames. The project is being supported by NASAs Earth Science Technology Office (ESTO) Advanced Information Systems Technology (AIST-16) Program.

NeMO-Net↗

NeMO-Net The Neural Multi-Modal Observation Training Network for Global Coral Reef Assessment

In the past decade, coral reefs worldwide have experienced unprecedented stresses due to climate change, ocean acidification, and anthropomorphic pressures, instigating massive bleaching and die-off of these fragile and diverse ecosystems. Furthermore, remote sensing of these shallow marine habitats is hindered by ocean wave distortion, refraction and optical attenuation, leading invariably to data products that are often of low resolution and signal-to-noise (SNR) ratio. However, recent advances in UAV and Fluid Lensing technology have allowed us to capture multispectral 3D imagery of these systems at sub-cm scales from above the water surface, giving us an unprecedented view of their growth and decay. Exploiting the fine-scaled features of these datasets, machine learning methods such as MAP, PCA, and SVM can not only accurately classify the living cover and morphology of these reef systems (below 8 error), but are also able to map the spectral space between airborne and satellite imagery, augmenting and improving the classification accuracy of previously low-resolution datasets.We are currently implementing NeMO-Net, the first open-source deep convolutional neural network (CNN) and interactive active learning and training software to accurately assess the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology. NeMO-Net will be built upon the QGIS platform to ingest UAV, airborne and satellite datasets from various sources and sensor capabilities, and through data-fusion determine the coral reef ecosystem makeup globally at unprecedented spatial and temporal scales. To achieve this, we will exploit virtual data augmentation, the use of semi-supervised learning, and active learning through a tablet platform allowing for users to manually train uncertain or difficult to classify datasets. The project will make use of Pythons extensive libraries for machine learning, as well as extending integration to GPU and High-End Computing Capability (HECC) on the Pleiades supercomputing cluster, located at NASA Ames. The project is being supported by NASAs Earth Science Technology Office (ESTO) Advanced Information Systems Technology (AIST-16) Program.

Remote Sensin↗

Decision Support Tool Evaluation Report for Coral Reef Early Warning System (CREWS) Version 7.0

The Coral Reef Early Warning System (CREWS) is operated by NOAA's Office of Oceanic and Atmospheric Research as part of its Coral Reef Watch program in response to the deteriorating global state of coral reef and related benthic ecosystems. In addition to sea surface temperatures (SSTs), the two most important parameters used by the CREWS network in generating coral reef bleaching alerts are 1) wind speed and direction and 2) photosynthetically available radiation (PAR). NASA remote sensing products that can enhance CREWS in these areas include SST and PAR products from the Moderate Resolution Imaging Spectroradiometer (MODIS) and wind data from the Quick Scatterometer (QuikSCAT). CREWS researchers are also interested in chlorophyll, chromophoric dissolved organic matter (CDOM), and salinity. Chlorophyll and CDOM are directly available as NASA products, while rainfall (an available NASA product) can be used as a proxy for salinity. Other potential NASA inputs include surface reflectance products from MODIS, the Advanced Spaceborne Thermal Emission and Reflection Radiometer, and Landsat. This report also identifies NASA-supported ocean circulation models and products from future satellite missions that might enchance the CREWS DST.

D'Sa, Eurico↗

Improving Cloud Detection in Satellite Images of Coral Reef Environments Using Space Shuttle Photographs and High-Definition Television

Coral reefs worldwide are suffering from severe and rapid degradation (Bryant et A, 1998; Hoegh-Guldberg, 1999). Quick, consistent, large-scale assessment is required to assess and monitor their status (e.g., USDOC/NOAA NESDIS et al., 1999). On-going systematic collection of high resolution digital satellite data will exhaustively complement the relatively small number of SPOT, Landsat 4-5, and IRS scenes acquired for coral reefs the last 20 years. The workhorse for current image acquisition is the Landsat 7 ETM+ Long Term Acquisition Plan (Gasch et al. 2000). Coral reefs are encountered in tropical areas and cloud contamination in satellite images is frequently a problem (Benner and Curry 1998), despite new automated techniques of cloud cover avoidance (Gasch and Campana 2000). Fusion of multidate acquisitions is a classical solution to solve the cloud problems. Though elegant, this solution is costly since multiple images must be purchased for one location; the cost may be prohibitive for institutions in developing countries. There are other difficulties associated with fusing multidate images as well. For example, water quality or surface state can significantly change through time in coral reef areas making the bathymetric processing of a mosaiced image strenuous. Therefore, another strategy must be selected to detect clouds and improve coral reefs mapping. Other supplemental data could be helpful and cost-effective for distinguishing clouds and generating the best possible reef maps in the shortest amount of time. Photographs taken from the 1960s to the present from the Space Shuttle and other human-occupied spacecraft are one under-used source of alternative multitemporal data (Lulla et al. 1996). Nearly 400,000 photographs have been acquired during this period, an estimated 28,000 of these taken to date are of potential value for reef remote sensing (Robinson et al. 2000a). The photographic images can be digitized into three bands (red, green and blue) and processed for various applications (e.g., Benner and Curry 1998, Nedeltchev 1999, Glasser and Lulla 2000, Robinson et al. 2000c, Webb et al, in press).

Andrefeouet, Serge↗

NeMO-Net & Fluid Lensing: The Neural Multi-Modal Observation & Training Network for Global Coral Reef Assessment Using Fluid Lensing Augmentation of NASA EOS Data

We present preliminary results from NASA NeMO-Net, the first neural multi-modal observation and training network for global coral reef assessment. NeMO-Net is an open-source deep convolutional neural network (CNN) and interactive active learning training software in development which will assess the present and past dynamics of coral reef ecosystems. NeMO-Net exploits active learning and data fusion of mm-scale remotely sensed 3D images of coral reefs captured using fluid lensing with the NASA FluidCam instrument, presently the highest-resolution remote sensing benthic imaging technology capable of removing ocean wave distortion, as well as hyperspectral airborne remote sensing data from the ongoing NASA CORAL mission and lower-resolution satellite data to determine coral reef ecosystem makeup globally at unprecedented spatial and temporal scales. Aquatic ecosystems, particularly coral reefs, remain quantitatively misrepresented by low-resolution remote sensing as a result of refractive distortion from ocean waves, optical attenuation, and remoteness. Machine learning classification of coral reefs using FluidCam mm-scale 3D data show that present satellite and airborne remote sensing techniques poorly characterize coral reef percent living cover, morphology type, and species breakdown at the mm, cm, and meter scales. Indeed, current global assessments of coral reef cover and morphology classification based on km-scale satellite data alone can suffer from segmentation errors greater than 40%, capable of change detection only on yearly temporal scales and decameter spatial scales, significantly hindering our understanding of patterns and processes in marine biodiversity at a time when these ecosystems are experiencing unprecedented anthropogenic pressures, ocean acidification, and sea surface temperature rise. NeMO-Net leverages our augmented machine learning algorithm that demonstrates data fusion of regional FluidCam (mm, cm-scale) airborne remote sensing with global low-resolution (m, km-scale) airborne and spaceborne imagery to reduce classification errors up to 80% over regional scales. Such technologies can substantially enhance our ability to assess coral reef ecosystems dynamics.

satellite data↗

NeMO-Net - The Neural Multi-Modal Observation & Training Network for Global Coral Reef Assessment

In the past decade, coral reefs worldwide have experienced unprecedented stresses due to climate change, ocean acidification, and anthropomorphic pressures, instigating massive bleaching and die-off of these fragile and diverse ecosystems. Furthermore, remote sensing of these shallow marine habitats is hindered by ocean wave distortion, refraction and optical attenuation, leading invariably to data products that are often of low resolution and signal-to-noise (SNR) ratio. However, recent advances in UAV and Fluid Lensing technology have allowed us to capture multispectral 3D imagery of these systems at sub-cm scales from above the water surface, giving us an unprecedented view of their growth and decay. By combining spatial and spectral information from varying resolutions, we seek to augment and improve the classification accuracy of previously low-resolution datasets at large temporal scales.NeMO-Net, the first open-source deep convolutional neural network (CNN) and interactive learning and training software, currently being developed at NASA Ames, is aimed at assessing the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology. The latest iteration uses fully convolutional networks to segment and identify coral imagery taken by UAVs and satellites, including WorldView-2 and Sentinel. We present results taken from the Indian Ocean where classification accuracy has exceeded 91% for 24 geomorphological classes given ample training data. In addition, we utilize deep Laplacian Pyramid Super-Resolution Networks (LapSRN) to reconstruct high resolution information from low resolution imagery, trained from various UAV and satellite datasets. Finally, in the case of insufficient training data, we have developed an interactive online platform that allows users to easily segment and submit their classifications, which has been integrated with the current NeMO-Net workflow. Specifically, we present results from the Fiji islands in which preliminary user data has allowed for the accurate identification of 9 separate classes, despite issues such as cloud shadowing and spectral variation. The project is being supported by NASA's Earth Science Technology Office (ESTO) Advanced Information Systems Technology (AIST-16) Program.

Neural↗

A 3D Citizen Science Video Game for NeMO-Net, the NASA Neural Multi-Modal Observation and Training Network for Global Coral Reef Assessment

NeMO-Net, the NASA neural multi-modal observation and training network for global coral reef assessment, is an open-source deep convolutional neural network aimed at accurately assessing the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology. We present here the active learning component of the project, which consists of an interactive video game prototype for tablet and mobile devices where players are able to intuitively label morphology classifications over mm-scale 3D coral reef imagery. Active learning applications present a novel methodology for engaging the public while efficiently providing large-scale training and test data for increasingly complex and data-intensive machine learning algorithms. NeMO-Net trains players on domain-specific knowledge through interactive tutorials and periodically checks players' input against pre-classified coral imagery to gauge their accuracy and utilize in-game mechanics to provide personalized classification training. Players can rate the classifications of other players, unlock rewards and join a global community as they explore and classify coral reefs and other shallow marine environments.

Citizen Science↗

A 3D Active Learning Application for NeMO-Net, the NASA Neural Multi-Modal Observation and Training Network for Global Coral Reef Assessment

NeMO-Net, the NASA neural multi-modal observation and training network for global coral reef assessment, is an open-source deep convolutional neural network and interactive active learning training software aiming to accurately assess the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology as well as mapping of spatial distribution. We present an interactive video game prototype for tablet and mobile devices where users interactively label morphology classifications over mm-scale 3D coral reef imagery captured using fluid lensing to create a dataset that will be used to train NeMO-Nets convolutional neural network. The application currently allows for users to classify preselected regions of coral in the Pacific and will be expanded to include additional regions captured using our NASA FluidCam instrument, presently the highest-resolution remote sensing benthic imaging technology capable of removing ocean wave distortion, as well as lower-resolution airborne remote sensing data from the ongoing NASA CORAL campaign. Active learning applications present a novel methodology for efficiently training large-scale Neural Networks wherein variances in identification can be rapidly mitigated against control data. NeMO-Net periodically checks users input against pre-classified coral imagery to gauge their accuracy and utilize in-game mechanics to provide classification training. Users actively communicate with a server and are requested to classify areas of coral for which other users had conflicting classifications and contribute their input to a larger database for ranking. In partnering with Mission Blue and IUCN, NeMO-Net leverages an international consortium of subject matter experts to classify areas of confusion identified by NeMO-Net and generate additional labels crucial for identifying decision boundary locations in coral reef assessment.

NeMO=NET↗

River streamflow, remotely-sensed water quality, and benthic composition of previously undescribed nearshore coral reefs in northern Puerto Rico

Land-based sediment stress represents a threat to many coral reefs in Puerto Rico primarily as a result of unrestricted land cover/land use changes and poor best management practices. The effects of such stresses have been documented along most coasts around the island. However, little attention has been paid to reefs located on the north coast, and very little is known about their composition and current state. Here, we present a study characterizing riverine inputs, water quality conditions, and benthic composition of two previously undescribed coral reefs (Tómbolo and Machuca reefs) located just eastward of the Río Grande de Manatí outlet in north-central Puerto Rico. This study utilizes a time series of remotely sensed ocean color products (diffuse vertical attenuation coefficient at 490 nm [Kd490] and chlorophyll-a concentration [Chl-a] estimated with data from the Visible Infrared Imaging Radiometer Suite [VIIRS]) to characterize water quality in this coastal region. In general, the months with relatively high mean daily river streamflow also coincide with months having the highest proportion of eastward wave direction, which can promote the eastward influence of river waters towards the two coral reefs sites. Kd490 and Chl-a showed a higher riverine influence closer to the watershed outlet. Kd490 and Chl-a monthly peaks also coincide with river streamflow highs, particularly at those pixels closer to shore. Tómbolo Reef, located farther eastward of the river outlet, shows a well-developed primary reef framework mainly composed of threatened reef-building species (Acropora palmata, Pseudodiploria) and high coral cover (19-51%). The benthos of Machuca Reef, located closer to the river outlet, is dominated by macroalgae with a significantly lower coral cover (0.2-2.7%) mainly composed of “weedy” coral species (Porites astroides, and S. radians). Cover of major benthic components correlates with distance from the river outlet, and with gradients in Kd490 and Chl-a, with higher coral cover and lower macroalgal cover farther from the river outlet. Coral cover at Tómbolo Reef is higher than what has been reported for similar sites around Puerto Rico and other Caribbean islands showing its ecological importance and, as up until now, an unrecognized potential refuge of reef-building threatened coral species.

benthic cover↗