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At least 19 records

Modeling study on the cleavage step of the self-splicing reaction in group I introns

A three-dimensional model of the Tetrahymena thermophila group I intron is used to further explore the catalytic mechanism of the transphosphorylation reaction of the cleavage step. Based on the coordinates of the catalytic core model proposed by Michel and Westhof (Michel, F., Westhof, E. J. Mol. Biol. 216, 585-610 (1990)), we first converted their ligation step model into a model of the cleavage step by the substitution of several bases and the removal of helix P9. Next, an attempt to place a trigonal bipyramidal transition state model in the active site revealed that this modified model for the cleavage step could not accommodate the transition state due to insufficient space. A lowering of P1 helix relative to surrounding helices provided the additional space required. Simultaneously, it provided a better starting geometry to model the molecular contacts proposed by Pyle et al. (Pyle, A. M., Murphy, F. L., Cech, T. R. Nature 358, 123-128. (1992)), based on mutational studies involving the J8/7 segment. Two hydrated Mg2+ complexes were placed in the active site of the ribozyme model, using the crystal structure of the functionally similar Klenow fragment (Beese, L.S., Steitz, T.A. EMBO J. 10, 25-33 (1991)) as a guide. The presence of two metal ions in the active site of the intron differs from previous models, which incorporate one metal ion in the catalytic site to fulfill the postulated roles of Mg2+ in catalysis. The reaction profile is simulated based on a trigonal bipyramidal transition state, and the role of the hydrated Mg2+ complexes in catalysis is further explored using molecular orbital calculations.

NASA Discipline Exobiology

Moon model - An offset core.

The lunar model proposed helps to account for the offset of the center of gravity from the center of the optical figure, the moments of inertia of the Moon, the 'mascons,' the localization of the maria basins on the near side of the Moon, the igneous nature of rocks, and the remanent magnetism. In the proposed model the Moon has a core whose center is offset from the center of the outside spheroid towards the earth. Such a core will be formed if the Moon were entirely molten at some time in its past, and on solidification was synchronous with the earth.

Ransford, G.

A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models

A benchmark calculation is proposed for evaluating the dynamical cores of atmospheric general circulation models (GCMs) independently of the physical parameterizations. The test focuses on the long-term statistical properties of a fully developed general circulation; thus, it is particularly appropriate for intercomparing the dynamics used in climate models. To illustrate the use of this benchmark, two very different atmospheric dynamical cores--one spectral, one finite difference--are compared. It is found that the long-term statistics produced by the two models are very similar. Selected results from these calculations are presented to initiate the intercomparison.

Held, Isaac M.

Core formation, evolution, and convection: A geophysical model

A model is proposed for the formation and evolution of the Earth's core which provides an adequate energy source for maintaining the geodynamo. A modified inhomogeneous accretion model is proposed which leads to initial iron and refractory enrichment at the center of the planet. The probable heat source for melting of the core is the decay of Al. The refractory material is emplaced irregularly in the lowermost mantle with uranium and thorium serving as a long lived heat source. Fluid motions in the core are driven by the differential heating from above and the resulting cyclonic motions may be the source of the geodynamo.

Ruff, L.

Rescue Shuttle Flight Re-Entry: Controlling Astronaut Thermal Exposure

A rescue mission for the STS-125 Hubble Telescope Repair Mission requires reentry from space with 11 crew members aboard, exceeding past cabin thermal load experience and risking crew thermal stress potentially causing cognitive performance and physiological decrements. The space shuttle crew cabin air revitalization system (ARS) was designed to support a nominal crew complement of 4 to 7 crew and 10 persons in emergencies, all in a shirt-sleeve environment. Subsequent to the addition of full pressure suits with individual cooling units, the ARS cannot maintain a stable temperature in the crew cabin during reentry thermal loads. Bulk cabin thermal models, used for rescue mission planning and analysis of crew cabin air, were unable to accurately represent crew workstation values of air flow, carbon dioxide, and heat content for the middeck. Crew temperature models suggested significantly elevated core temperatures. Planning for an STS-400 potential rescue of seven stranded crew utilized computational fluid dynamics (CFD) models to demonstrate inhomogeneous cabin thermal properties and improve analysis compared to bulk models. In the absence of monitoring of crew temperature, heart rate, metabolic rate and incomplete engineering data on the performance of the integrated cooling garment/cooling unit (ICG/CU) at cabin temperatures above 75 degrees F, related systems & models were reevaluated and tests conducted with humans in the loop. Changes to the cabin ventilation, ICU placement, crew reentry suit-donning procedures, Orbiter Program wave-off policy and post-landing power down and crew extraction were adopted. A second CFD and core temperature model incorporated the proposed changes and confirmed satisfactory cabin temperature, improved air distribution, and estimated core temperatures within safe limits. CONCLUSIONS: These changes in equipment, in-flight and post-landing procedures, and policy were implemented for the STS-400 rescue shuttle & will be implemented in any future rescue flights from the International Space Station of stranded shuttle crews.

Gillis, David B.

Origin, Bulk Chemical Composition and Physical Structure of the Galilean Satellites of Jupiter: A Post-Galileo Analysis

The origin of Jupiter and the Galilean satellite system is examined in the light of the new data that has been obtained by the NASA Galileo Project. In particular, special attention is given to a theory of satellite origin which was put forward at the start of the Galileo Mission and on the basis of which several predictions have now been proven successful. These predictions concern the chemical composition of Jupiter's atmosphere and the physical structure of the satellites. According to the proposed theory of satellite origin, each of the Galilean satellites formed by chemical condensation and gravitational accumulation of solid grains within a concentric family of orbiting gas rings. These rings were cast off equatorially by the rotating proto-Jovian cloud (PJC which contracted gravitationally to form Jupiter some 4 1/2 billion years ago. The PJC formed from the gas and grains left over from the gas ring that had been shed at Jupiter's orbit by the contracting proto-solar cloud (PSC Supersonic turbulent convection provides the means for shedding discrete gas rings. The temperatures T (sub n) of the system of gas rings shed by the PSC and PJC vary with their respective mean orbital radii R (sub n) (n = 0, 1,2,...) according as T (sub n) proportional to R (sub n) (exp -0.9). If the planet Mercury condenses at 1640 K, so accounting for the high density of that planet via a process of chemical fractionation between iron and silicates, then T (sub n) at Jupiter's orbit is 158 K. Only 35% of the water vapour condenses out. Thus fractionation between rock and ice, together with an enhancement in the abundance of solids relative to gas which takes place through gravitational sedimentation of solids onto the mean orbit of the gas ring, ensures nearly equal proportions of rock and ice in each of Ganymede and Callisto. Io and Europa condense above the H20 ice point and consist solely of hydrated rock (h-rock). The Ganymedan condensate consists of h-rock and H20 ice. For Callisto, NH3 ice makes up -5% of the condensate mass next to h-rock (approximately 50%) and H2O ice (approximately 45%). Detailed thermal and structural models for each of Europa, Ganymede and Callisto are constructed on the basis of the above initial bulk chemical compositions. For Europa (E), a predicted 2-zone model consisting of a dehydrated rock core of mass 0.912 M (sub E) and a 150 km thick frozen mantle of salty H2O yields a moment-of-inertia coefficient which matches the Galileo Orbiter gravity measurement. For Ganymede (G), a 3-zone model possessing an inner core of solid FeS and mass approximately 0.116 M (sub G), and an outer H2O ice mantle of mass approximately 0.502 M (sub G) is needed to explain the gravity data. Ganymede's native magnetic field was formed by thermoremanent magnetization of Fe3O4. A new Callisto (C) model is proposed consisting of a core of mass 0.826 M (sub C) containing a uniform mixture of h-rock (60% by mass) and H2O and NH3 ices, and capped by a mantle of pure ice. This model may have the capacity to yield a thin layer of liquid NH3 (raised dot) 2H2O at the core boundary, in line with Galileo's discovery of an induced magnetic field.

Prentice, A. J. R.

Spatial power spectra of the crustal geomagnetic field and core geomagnetic field

Equations providing numerical values of the geomagnetic field spherical harmonic spatial power spectrum as defined by Lowes (1966, 1974) are obtained and this power spectrum is related to various other power spectra. Equations relating the spherical harmonic spatial power spectrum to average great circle power spectra for components of the vector magnetic field in the radial direction, along the great circle track and perpendicular to the first two directions are derived under the assumption that the sources of the field are internal. A statistical model for the crustal and core geomagnetic fields is proposed and used to derive equations for the expected main and crustal spherical harmonic power spectra. The model equations are then compared with observations to determine a scale factor which is then used to obtain an estimate for the core radius and a great circle power spectrum for the field component perpendicular to the great circle and radial directions which are in good agreement with observations. The predicted spherical harmonic power spectrum for the crustal field is found to be consistent with POGO satellite and aircraft data. Other possible models for the crustal and core geomagnetic fields are also briefly considered.

Mcleod, M. G.

Relevence of 3D Simulations and Sandwich Core Topology for the Modeling of Honeycomb Core Sandwich Panels Undergoing Mode I Delamination

A recently developed cohesive zone traction-separation law, which includes the effects of fiber bridging in a novel way, is extended from 2D to 3D. The proposed cohesive model is applied to low fidelity (i.e. homogenized core representation) and high fidelity (i.e. directly accounting for the core topology) finite element models of a composite panel comprised of carbon fiber reinforced plastic facesheets and a honeycomb sandwich core. This enables the investigation of 2D to 3D parameter transferability, width-dependent effects such as thumbnail-shaped crack growth, and the verification of plane strain / plane stress assumptions. A pronounced curvature of the initial interface-related crack front is observed, while the bridging-related crack front is straight. Furthermore, it is found that the cohesive parameters can easily be transferred from 2D to 3D under plane stress assumptions, but not under plane strain assumptions. The numerical predictions are compared to experimental load-displacement and R-curves.

Composites

On the joint inversion of geophysical data for models of the coupled core-mantle system

Joint inversion of magnetic, earth rotation, geoid, and seismic data for a unified model of the coupled core-mantle system is proposed and shown to be possible. A sample objective function is offered and simplified by targeting results from independent inversions and summary travel time residuals instead of original observations. These data are parameterized in terms of a very simple, closed model of the topographically coupled core-mantle system. Minimization of the simplified objective function leads to a nonlinear inverse problem; an iterative method for solution is presented. Parameterization and method are emphasized; numerical results are not presented.

Voorhies, Coerte V.

0.7- to 23-micron photometric observations of P/Halley 2986 III and six recent bright comets

Infrared photometry over 0.7-23 micron range is presented for P/Halley 1986 III and six other recent bright comets. It is concluded that comets can be classified by their thermal infrared energy distributions. IR Type I comets have low continuum superheat and the 10-micron silicate emission is muted or absent. IR Type II comets have large continuum superheat and strong silicate emission features. Simultaneous measurements of P/Halley and Bradfield 1980 XV are generally consistent with the steady-state model for nuclear ablation. P/Halley's dust coma had an average albedo of 0.20 at a scattering angle of 130 deg. The correlation between superheat and 20-micron silicate excess, the flattened forward-scattering peak of the albedo curve, and the relatively low backscattering albedo are all consistent with laboratory and theoretical results for nonspherical and fluffy grains. The results appear to be especially consistent with core-mantle grain models such as those proposed by Greenberg and Hage (1989).

Gehrz, R. D.

Core formation, evolution, and convection - A geophysical model

A model for the formation and evolution of the earth's core, which provides an adequate energy source for maintaining the geodynamo, is proposed. A modified inhomogeneous accretion model is proposed which leads to initial iron and refractory enrichment at the center of the planet. The probable heat source for melting of the core is the decay of Al-26. The refractory material is emplaced irregularly in the lowermost mantle with uranium and thorium serving as a long-lived heat source. Fluid motions in the core are driven by the differential heating from above and the resulting cyclonic motions may be the source of the geodynamo.

Ruff, L.

A model for core formation in the early Earth

Two basic types exogenous models were proposed to account for siderophile and chalcophile element abundances in the Earth's upper mantle. The first model requires that the Earth be depleted in volatiles and that, after a core formation event which extracted the most siderophile elements into the core, additional noble siderophile elements (Pt, Ir, Au) were added as a late veneer and mixed into the mantle. The second model postulates a reduced Earth with approximately CI elemental abundances in which a primary core forming event depleted all siderophile elements in the mantle. The plausibility of models which require fine scale mixing of chondritic material into the upper mantle is analyzed. Mixing in liquids is more efficient, but large degrees of silicate partial melting will facilitate the separation of magma from residual solids. Any external events affecting the upper mantle of the Earth should also be evident in the Moon; but siderophile and chalcophile element abundance patterns inferred for the mantles of the Earth and Moon differ. There appear to be significant physical difficulties associated with chondritic veneer models.

Jones, J. H.

H-alpha Proxies for EIT Crinkles: Further Evidence for Pre-Flare "Breakout"-Type Activity in an Ejective Solar Eruption

We present Halpha observations from Big Bear Solar Observatory of an eruptive flare in NOAA AR 8210, occurring near 22:30 UT on 1998 May 1. Previously, using the EUV Imaging Telescope (EIT) on the SOHO spacecraft, we found that a pattern of transient, localized brightenings, which we call "EIT crinkles," appears in the neighborhood of the eruption near the time of flare onset. These EIT crinkles occur at a location in the active region well separated from the sheared core magnetic fields, which is where the most intense features of the eruption are concentrated. We also previously found that high-cadence images from the Soft X-ray Telescope (SXT) on Yohkoh indicate that soft X-ray intensity enhancements in the core begin after the start of the EIT crinkles. With the Halpha data, we find remote flare brightening counterparts to the EIT crinkles. Lightcurves as functions of time of various areas of the active region show that several of the remote flare brightenings undergo intensity increases prior to onset of principle brightenings in the core region, consistent with our earlier findings from EIT and SXT data. These timing relationships are consistent with the eruption onset mechanism known as the breakout model, introduced by Antiochos and colleagues, which proposes that eruptions begin with reconnection at a magnetic null high above the core region. Our observations are also consistent with other proposed mechanisms which do not involve early reconnection in the core region. As a corollary, our observations are not consistent with the so-called tether cutting models, which say that the eruption begins with reconnection in the core. The Halpha data further show that a filament in the core region becomes activated near the time of EIT crinkle onset, but little if any of the filament actually erupts, despite the presence of a halo Coronal Mass Ejection (CME) associated with this event.

Sterling, Alphonse C.

H(alpha) Proxies for EIT Crinkles: Further Evidence for Preflare "Breakout"-Type Activity in an Ejective Solar Eruption

We present H(alpha) observations from Big Bear Solar Observatory of an eruptive flare in NOAA Active Region 8210, occurring near 22:30 UT on 1998 May 1. Previously, using the Extreme Ultraviolet Imaging Telescope (EIT) on the Solar and Heliospheric Observatory (SOHO) spacecraft, we found that a pattern of transient, localized brightenings, which we call 'EIT crinkles,' appears in the neighborhood of the eruption near the time of flare onset. These EIT crinkles occur at a location in the active region well separated from the sheared core magnetic fields, which is where the most intense features of the eruption are concentrated. We also previously found that high-cadence images from the Soft X-ray Telescope (SXT) on Yohkoh indicate that soft X-ray intensity enhancements in the core begin after the start of the EIT crinkles. With the H(alpha) data, we find remote flare brightening counterparts to the EIT crinkles. Light curves as functions of time of various areas of the active region show that several of the remote flare brightenings undergo intensity increases prior to the onset of principal brightenings in the core region, consistent with our earlier findings from EIT and SXT data. These timing relationships are consistent with the eruption onset mechanism known as the breakout model, introduced by Antiochos and colleagues, which proposes that eruptions begin with reconnection at a magnetic null high above the core region. Our observations are also consistent with other proposed mechanisms that do not involve early reconnection in the core region. As a corollary, our observations are not consistent with the so-called tether-cutting models, which say that the eruption begins with reconnection in the core. The H(alpha) data further show that a filament in the core region becomes activated near the time of EIT crinkle onset, but little if any of the filament actually erupts, despite the presence of a halo coronal mass ejection (CME) associated with this event.

Sterling, Alphonse C.

A post-core-collapse model for the nucleus of M33

A model for the post-collapse core of M33 is proposed. By analogy with globular clusters, the formation of tight binary systems powers the reexpansion of the core, and it is expected that low-mass X-ray binaries form at a rate about equal to that of all galactic globular clusters combined. About a dozen such binaries should be present, and their combined emission may explain the large and enigmatic unresolved X-ray emission from the nucleus of M33. In addition, tidal formation of cataclysmic binaries may lead to a nova rate of more than about one per century. Numerous blue stragglers have probably formed through mergers caused by stellar collisions, but their density is probably too low to explain the blue color of the nucleus. Young stars are the likely cause for the color, and their presence may complicate the simple dynamical picture presented here.

Hernquist, Lars

A spinar model of Cygnus A

It is proposed that a gravitationally bound supermassive object is located in the 'core' of each of the Cyg A radio clouds and that these objects are responsible for the prolonged ejection of magnetic plasma which produces the synchrotron radio emission. The objects are considered to be analogous to the massive rotators, or spinars, which have been used to model the central radio and optical activity of quasars. The formation of Cyg A is described in terms of the breakup of such an object in the central optical galaxy, and the physical properties of both the compact and the giant clouds are discussed, including the effects of intergalactic drag. It is shown that the spinars are capable of effectively replenishing the extended radio clouds with relativistic electrons, even if they are embedded within the compact clouds. The spinars are modeled quantitatively, and their possible detection is considered. The requirements of the proposed model are compared with those of several other models for bright double radio galaxies.

Flasar, F. M.

An investigation of MAGSAT and complementary data emphasizing precambrian shields and adjacent areas of West Africa and South America

There is lack of acceptance of quantitative crustal models by specialists on regional geology because of the problem of east-west banding on MAGSAT anomaly maps. The possibility of some of the Earth's magnetic field being created in the mantle below the Curie isotherm is discussed as well as the need to remove spherical harmonics of degrees less than 15 from the anomaly map. Two dimensional models were produced for northern South America that might be considered as working models. These models suggest that the presumed Amazon River depression is better developed near Belem and in the upper Amazon basin than in the central Amazon basin. An attempt is proposed for separating the core field from the crustal field using a flat-Earth model.

Hastings, D. A.

A new source of ozone in the terrestrial upper atmosphere?

The simultaneous measurements of atomic O, O2, O3, and N2 between 90 and 110 km obtained by a rocket-borne mass spectrometer flown during the Aladdin 74 program provide an opportunity to test directly the simple atmosphperic chemical model first proposed more than 50 years ago by S. Chapman, which is today the core of the complex chemistry controlling stratospheric O3. The Aladdin 74 O3 results are found to be significantly in excess of model abundances computed using the most current values of the key chemical parameters. The calculations may possibly be in error due to uncertainties in these key parameters and/or in the measurement of the related species. However, the extra O3 may be a consequence of reactions between ground state O2 and electronically excited O2 resulting from the recombination of atomic O.

Allen, M.