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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Enhancing Dataset Discovery and Usage Tracking in Earth Sciences: Integrating Knowledge Graphs and Large Language Models

NASA's Data Active Archive Centers (DAACs) have played a crucial role in supporting a wide range of applied research in Earth and Environmental sciences. To date, over 20,000 publications have been collected, citing more than 3,000 NASA Earth science datasets. We present an innovative approach that links datasets and collected publications through a knowledge graph (KG). This KG enables the tracking of dataset citations throughout the dataset's lifecycle, revealing patterns of dataset usage across various applied research areas. We fine-tuned the pre-trained NASA IMPACT INDUS-Base Retriever Large Language Model (LLM) using a set of labeled publication abstracts. Our results indicate that 87% of the publications were classified into one of twenty applied research areas, while the remaining 13% were categorized into non-applied research areas. The classified publications linked to datasets are used to discover datasets by users interested in specific applied research and by dataset providers to determine dataset usage for applications.

open-source↗
NASA NTRSDate not supplied

Creating a Repository of Publication Citations for a Data Center

Tracking dataset citations in scientific publications provide multiple benefits: obtaining citation indices for quantitative evaluation of the dataset scientific impact, learning about dataset usage in applied sciences, credits to dataset creators, datasets co-citation relationships and many more.

Infometrics↗
NASA NTRSDate not supplied

Discovering Research Areas in Dataset Applications Through Knowledge Graphs and Large Language Models

Scientific datasets are increasingly cited in peer-reviewed journal publications, facilitating easy access to research utilizing those datasets. Datasets undergo a life cycle where older versions of datasets are replaced by newer versions often due to improvements in data resolution, algorithms, and other factors. Unlike peer reviewed documents registered with a single Digital Unique Identifier (DOI), datasets can be updated over time and the newer version of the datasets are registered with a new DOI which is not necessarily linked to the previous version of the dataset. It is challenging when publications citing a dataset need to be traced over the entire life cycle of that dataset. We provide an innovative approach to link the dataset versions and publications using a knowledge graph (KG). KG can help to trace the dataset cited in publications over the entire dataset life cycle and shed light into dataset usage in various applied research areas. We fine-tuned the pretrained NASA IMPACTINDUS Large Language Model (LLM) on a set of labeled publications abstracts. Our results showed that 87% of the publications were classified into one of twenty applied research areas, while the remaining 13% were classified into non-applied research areas. By linking datasets to applied research areas through the KG and employing Global Change Master Directory(GCMD), a well-established controlled vocabulary of scientific keywords describing Earth science datasets, we contribute to a transparent and advanced search and discovery mechanism for datasets across the Earth data ecosystem. The integrated KG and LLM approach is now incorporated and operational in dataset publication management at one of NASA’s Earth science data archival centers.

data provenance↗
NASA NTRS2024

Analyzing EOSDIS Dataset Research Outputs using Knowledge Graphs and Large Language Models

Datasets, unlike publications, can be updated over time, with each new version receiving a DOI but not always being linked to previous ones. This complicates tracking citations across a dataset’s lifecycle. We address this by integrating dataset versions and citations into a knowledge graph (KG), which helps trace dataset citations and analyze dataset usage in applied research. To categorize publications from various journals, we fine-tuned NASA IMPACT INDUS Large Language Model (LLM) on a labeled publication set, assigning publications to one of twenty applied research areas. By linking datasets to these research areas, we improved dataset searchability and discovery through these domains.

open-source↗
NASA NTRSDate not supplied

Automated Collection of Scientific Publications Linked to NASA Earth Science Datasets

NASA's Earth Observing System Data and Information System (EOSDIS) began dataset Digital Object Identifier (DOI) registration in 2012. The number of dataset DOIs registered as of January of 2023 exceeds 11,000. As the research community becomes aware of the importance of sharing data through Open Science and optimizing data reuse through Findability, Accessibility, Interoperability, and Reuse (FAIR) data management principles, datasets are increasingly being cited in scientific publications. When datasets are cited explicitly by DOI within published works, automated methods can be developed for collecting these published works from a variety of bibliometric sources. The coverage of the sources varies, so each source can collect citations that are only available within it. Using major citation databases such as Scopus and Web of Science, the Google Scholar search engine, the CrossRef Open Citation Index, and the dataset DOI registry DataCite, we present an automated workflow for dataset citation collection. By harvesting citations automatically, a citation library is created explicitly linking EOSDIS datasets to publications that cite them. Using Zotero, a free and open-source citation manager, we demonstrate how to access and browse this library by the tags indicating bibliometric sources, dataset DOI, and the dataset archive center. We also demonstrate temporary trends in the number of publications harvested from bibliometric sources.

Infometrics↗
NASA NTRS2024

Bridging the Gap: Enhancing Prominence and Provenance of NASA Datasets in Research Publications

Attribution of datasets that were used to generate research results described in peer-reviewed publications to the original source of these datasets (which are often archived at NASA Earth Science data centers) has been very challenging. Even though the data citation standard of citing datasets as research artifacts and citing them with Digital Object Identifiers (DOIs) was introduced over a decade ago, most authors do not properly reference the data used in their studies and merely mention them in the text. The lack of proper citations of datasets makes the peer-reviewed publication less transparent, imperils reproducibility, and impedes open science. We offer an open-source publication management methodology and a tool that can help to enhance usage-based data discovery, prominence, and provenance of the data; reproducibility of the research results; and potentially increase the return on investment on NASA-funded research.

open-source↗
NASA NTRSDate not supplied

A Hybrid Approach to Labeling Datasets in Earth Science Publications

NASA Data Centers provide the public with thousands of datasets that result in published papers, reports, and conference proceedings. Collecting accurate metrics on usage of these datasets is key to connecting different areas of knowledge and evaluating the datasets’ impact. While most of the datasets have Digital Object Identifiers (DOIs) assigned, most publications do not cite them hampering the automated search of these publications. Instead, articles mention attributes like organization, instrument, mission, variable, or a publication describing the dataset. Often only domain experts can deduce the dataset that was used in the publication text. The lack of a citation slows the spread of information and reduces the research’s impact. With thousands of papers produced each year, an automated means of labeling datasets is critical. This paper explores a hybrid approach of heuristics and a Natural Language Processing (NLP) Named Entity Recognition (NER) model to find and label the datasets used within Earth Science papers. Heuristics are used to produce the labelled sentences and any potential dataset candidates that can be derived from a sentence. The heuristic labels the sentences with the names of mission, instrument, re-analysis models, and science keywords taken from the Global Change Master Directory (GCMD) ontology. Additionally, it uses those labels to generate the dataset citation candidates. If the mission, instrument, and variable are sufficient to create the citation for the dataset the citation and the label the domain expert reviews the output without going through the NLP model. If the extracted label is not sufficient to label the dataset on its own, the sentence and its associated dataset labels will be inputted into the NER model. The model outputs the labeled sentence and the potential dataset candidates with their associated probabilities. The domain expert then reviews the NER model’s output and the correct labels are determined. The newly labelled papers can then be used as additional training data. This creates an iterative process for the approach to continuously improve. Because all the possible mentions are gathered by the model, the domain expert can quickly and easily label the papers resulting in large time savings.

Jacob Atkins↗
NASA NTRSDate not supplied

Development of a Knowledge Graph for Dataset Discovery and Identification at a NASA Data Center

The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) archives and distributes hundreds of Earth Science data collections to the public. These collections are used in research, resulting in the publication of thousands of scientific papers each year. As new users come to GES DISC for data, it is important for them to understand how prior research used the data. To help researchers, a knowledge graph (KG) was designed and implemented to connect publication citations with dataset metadata. The relationships created in the graph have the potential to allow the Web applications that utilize this information to directly connect the publication to the GES DISC datasets and services. These relationships are demonstrated using a web application prototype. In addition, the graph can also make connections between publications, datasets, and measurements based on the mentions of datasets and their attributes in the publications. To demonstrate this capability, a web application was created that takes the excerpt from the publication and returns a most likely dataset and measurement pairing, ranking the results based on how often these datasets and measurements were used in prior publications.

Nathaniel Crosby↗
NASA NTRSDate not supplied

Application of ML/AI for Identifying Earth Science Datasets in Research Publications

NASA Data Active Archive Centers, or DAACs, ingest, store and distribute data acquired from satellites, ground systems as well as modelling data. These data are organized by the datasets, each presenting collection of files usually associated with the certain mission, instrument, processing level, parameter(s), algorithm and/or model. The number of datasets offered by a single DAAC to the public varies. GES DISC, for example, currently offers for public use approximately ~1,300 datasets. While each publicly offered dataset comes with supporting documentation, it is challenging for novice and even experienced scientists to navigate among the datasets that offer similar parameters to find the datasets for their particular research application. Supplying dataset documentation with the scientific paper citations that refer to that dataset provides means for the dataset users to educate themselves with the application research that dataset is being used in. Collecting citations of the papers that use the datasets for their research yield valuable insights into application areas of those datasets, information about usage of the dataset groups for specific applications and those application topics. It also gives insights into the “deep metrics” of the dataset usage, as opposed to the common metrics of the dataset usage such as number of users who downloaded the dataset files and volumes of downloaded data. Association of a certain scientific paper with the dataset(s) presents a challenge because most of the paper authors do not properly cite the datasets, datasets usually have cryptic names and Digital Object Identifiers (DOIs) that are used for dataset identification were assigned to the datasets only few years ago. Simple Google or online library search do not provide even meaningful fraction of the results when performed by the dataset name or DOI, however they provide too many results when the search is done by more broader terms such as mission and instrument names. Attempts to create an AI system capable to identify dataset in the scientific papers have already been made using neural networks classifiers on the basis of the dataset mission, instrument and variable name. This method was applied to NASA SEDAC, which has 41 datasets in total. In GES DISC there can be as many as ~100 datasets per mission/instrument with some of the datasets consisting of multiple variables so there is a need for more differentiating parameters for dataset identification in the paper. The approach we are currently investigating is creating AI classifiers that are based on multiple dataset features, or keywords, extracted from the NASA Earthdata Common Dataset Repository (CMR). The features are weighted based on how precisely they can identify a dataset. The classifier uses preprocessed paper text as input and searches for the CMR datasets whose feature sets are the closest to the feature sets contained in the paper. The challenges of dataset identification include variety of ways the paper authors describe the datasets in their papers and incomplete tagging of the CMR dataset description (DIFs).

Irina Gerasimov↗
NASA NTRSDate not supplied

Utilizing Google Scholar as a Bibliographic Resource for Publications Search

This study focuses on the automated search for publication citations for the Earth Observing System Data and Information System (EOSDIS) datasets. The research investigates the feasibility of using automated search methods to gather published works from various bibliometric databases. A comparison is presented, highlighting the differences in citation counts obtained from Google Scholar compared to established bibliographic databases. The study also introduces a methodology and an open-source tool for getting publication citations from Google Scholar, utilizing dataset DOIs and keyword searches. The findings contribute to understanding the reliability and effectiveness of Google Scholar as a source for dataset citation retrieval and provide researchers with a valuable resource for obtaining comprehensive citation data.

Infometrics↗
NASA NTRSDate not supplied

An Automated Approach to Labelling Datasets in Earth Science Publications

NASA Data Active Archive Centers, orDAACs, ingest, store, and distribute dataacquired from satellites, ground systems as well asreanalysis models. Many authors use this datain their research. However, most of the datasets usedin Earth Science Publications are not citedcorrectly or not cited at all. Thus, there is no directlink between the datasets used and thescientific publications which reference them. Thisleads to issues with reproducibility of theresults, attribution of the research results, anddiscovery of new datasets. This project began byexploring various methods of automatically labellingGoddard Earth Sciences Data andInformation Services Center (GES DISC) datasets usingSupervised Machine Learning and EarthData Search Common Metadata Repository (CMR) queries.The ultimate goal was to create alibrary of citations that utilized automated citationlabeling to directly link the researchpublications to the data they use. Supervised MachineLearning approaches struggled due to thelimited amount of labelled training data to learnfrom. Increasing the volume of training data isdifficult as it requires subject matter experts todevote time to manually reviewing journalarticles and determining the datasets used. The CMRqueries were inconsistent because theunderlying metadata is continuously being updated.Thus, it is hard to generalize theeffectiveness of the CMR results as they are dependenton the internal state of CMR. Theseapproaches helped inform the decision to transitionthe project into using a Knowledge Graph.Another key aspect of this project focused on theautomated extraction of features (platform,instrument, variables, etc) and explicit citationsfrom within Earth Science Publications. Theseautomated extractions were used to classify researchpapers based on their platform/instrumentcouples. This information was input into the CitationManagement System for GES DISC. Theseplatform/instrument couples also provide an additionalfacet that can be searched on the GESDISC website.

Edward Jahoda↗
NASA NTRS2017

GES DISC Datalist Improves Earth Science Data Discoverability

At American Geophysical Union(AGU) 2016 Fall Meeting, Goddard Earth Sciences Data Information Services Center (GES DISC) unveiled a novel way to access data: Datalist. Currently, datalist is a collection of predefined data variables from one or more archived datasets, curated by our subject matter expert (SME). Our science support team has curated a predefined Hurricane Datalist and received very positive feedback from the user community. Datalist uses the same architecture our new website uses and have the same look and feel as other datasets on our web site. and also provides a one-stop shopping for data, metadata, citation, documentation, visualization and other available services. Since the last AGU Meeting, we have further developed a few new datalists corresponding to the Big Earth Data Initiative (BEDI) Societal Benefit Areas and A-Train data. We now have four datalists: Hurricane, Wind Energy, Greenhouse Gas and A-Train. We have also started working with our User Working Group members to create their favorite datalists and working with other DAAC to explore the possibility to include their products in our datalists that may also lead to a future of potential federated (cross-DAAC) datalists. Since our datalist prototype effort was a success, we are planning to make datalist operational. It's extremely important to have a common metadata model to support datalist, this will also be the foundation of federated datalist. We mapped our datalist metadata model to the unpublished UMM(Universal Metadata Model)-Var (Variable) (June version) and found that the UMM-var together with UMM-C (Collection) and possible UMM-S (Service) will meet our basic requirements. For example: Dataset shortname, and version are already specified in UMM-C, variable name, long name, units, dimensions are all specified in UMM-Var. UMM-Var also facilitates Science Keywords to allow tagging at variable level and Characteristics for optional variable characteristics. Measurements is useful for grouping of the variables and Set is promising to define datalist. And finally, the UMM-Service model to specify the available services for the variable will be very beneficial. In summary, UMM-Var, UMM-C and UMM-S are the basis of federated datalist and the development and deployment of datalist will contribute to the evolution of the UMM.

datalist↗
NASA NTRSDate not supplied

Automated classification of scientific publications linked to GES DISC datasets

The data collections archived and distributedby the GES DISC NASA data center arewidely utilized for various Earth Science studies.As these collections are created, many researchworks are published regarding the collections, algorithms,validations and applications. SinceGES DISC collects these publications and providestheir citations for the users, it is helpful tocategorize them based on how they relate to the datasetsthey are associated with. Specifically,whether the publication that is linked to GES DISCdataset is using it for applicational research,or if it describes the algorithm for dataset creation,or the validation of the dataset, or providesthe general overview of the data collection. Currently,this process requires simple manuallabelling, and as such, may be possible to solve viaautomation. To approach this problem, wedeveloped machine learning classifiers to predictthe category a publication belongs to. We usedmanually labeled publications as training data forsupervised machine learning algorithms:Random Forest and Naive Bayes. We achieved classificationaccuracy that is substantially betterthan the baseline accuracy, thus greatly improvingthe efficiency of the publication internalanalysis.

Rohan Dayal↗
NASA NTRSDate not supplied

Creating a knowledge graph to connect scientific publications and datasets for improving discovery of GES DISC’s data and services

The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) archives and distributes to the public hundreds of Earth Science data collections. These collections are used in research, resulting in thousands of scientific papers published each year. As new users come to GES DISC for the data, it is important for them to understand how these data were used in the prior research. For this we are creating the Knowledge Graph that connects research paper citation and the data collection metadata. The relationships created in the graph have potential for the Web applications that utilize this information to directly connect the paper research to the GES DISC datasets and services. We will demonstrate these relationships using the Web application prototype.

Nathaniel Ross Crosby↗
NASA NTRS2017

New GES DISC Services Shortening the Path in Science Data Discovery

The Current GES DISC available services only allow user to select variables from a single dataset at a time and too many variables from a dataset are displayed, choice is hard. At American Geophysical Union (AGU) 2016 Fall Meeting, Goddard Earth Sciences Data Information Services Center (GES DISC) unveiled a new service: Datalist. A Datalist is a collection of predefined or user-defined data variables from one or more archived datasets. Our science support team curated predefined datalist and provided value to the user community. Imagine some novice user wants to study hurricane and typed in hurricane in the search box. The first item in the search result is GES DISC provided Hurricane Datalist. It contains scientists recommended variables from multiple datasets like TRMM, GPM, MERRA, etc. Datalist uses the same architecture as that of our new website, which also provides one-stop shopping for data, metadata, citation, documentation, visualization and other available services.We implemented Datalist with new GES DISC web architecture, one single web page that unified all user interfaces. From that webpage, users can find data by either type in keyword, or browse by category. It also provides user with a sophisticated integrated data and services package, including metadata, citation, documentation, visualization, and data-specific services, all available from one-stop shopping.

Datalist↗
NASA NTRS2012

Changes in Land Surface Water Dynamics since the 1990s and Relation to Population Pressure

We developed a remote sensing approach based on multi-satellite observations, which provides an unprecedented estimate of monthly distribution and area of land-surface open water over the whole globe. Results for 1993 to 2007 exhibit a large seasonal and inter-annual variability of the inundation extent with an overall decline in global average maximum inundated area of 6% during the fifteen-year period, primarily in tropical and subtropical South America and South Asia. The largest declines of open water are found where large increases in population have occurred over the last two decades, suggesting a global scale effect of human activities on continental surface freshwater: denser population can impact local hydrology by reducing freshwater extent, by draining marshes and wetlands, and by increasing water withdrawals. Citation: Prigent, C., F. Papa, F. Aires, C. Jimenez, W. B. Rossow, and E. Matthews (2012), Changes in land surface water dynamics since the 1990s and relation to population pressure, in section 4, insisting on the potential applications of the wetland dataset.

Prigent, C.↗
NASA NTRSDate not supplied

Towards Automated Analytics of Research Publications

For readers of scientific publications it remains a big challenge to unambiguously relate the published research with the data used. To a substantial degree it is attributed to authors, journals, editors, and reviewers not prioritizing correct data citation, which impacts traceability, repeatability, and giving credits to published authors and their funding sources. Furthermore, uniform classification of the content of the published research is hampered by journals using journal specific topics and letting authors to assign free text keywords to their papers. We demonstrate automated analytics methods for extracting and relating datasets used and the research application areas by processing 1,300 research papers that referenced the NASA Giovanni service (but probably not the datasets in particular) as supporting their publication process. This presentation was given during the 2022 ESIP January meeting held virtually in January 2022.

Irina Gerasimov↗