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At least 19 records

An adjoint method for a high-order discretization of deforming domain conservation laws for optimization of flow problems

We report the fully discrete adjoint equations and the corresponding adjoint method are derived for a globally high-order accurate discretization of conservation laws on parametrized, deforming domains. The conservation law on the deforming domain is transformed into one on a fixed reference domain by the introduction of a time-dependent mapping that encapsulates the domain deformation and parametrization, resulting in an Arbitrary Lagrangian–Eulerian form of the governing equations. A high-order discontinuous Galerkin method is used to discretize the transformed equation in space and a high-order diagonally implicit Runge–Kutta scheme is used for the temporal discretization. Quantities of interest that take the form of space–time integrals are discretized in a solver-consistent manner. The corresponding fully discrete adjoint method is used to compute exact gradients of quantities of interest along the manifold of solutions of the fully discrete conservation law. These quantities of interest and their gradients are used in the context of gradient-based PDE-constrained optimization. The adjoint method is used to solve two optimal shape and control problems governed by the isentropic, compressible Navier–Stokes equations. The first optimization problem seeks the energetically optimal trajectory of a 2D airfoil given a required initial and final spatial position. The optimization solver, driven by gradients computed via the adjoint method, reduced the total energy required to complete the specified mission nearly an order of magnitude. The second optimization problem seeks the energetically optimal flapping motion and time-morphed geometry of a 2D airfoil given an equality constraint on the x-directed impulse generated on the airfoil. The optimization solver satisfied the impulse constraint to greater than 8 digits of accuracy and reduced the required energy between a factor of 2 and 10, depending on the value of the impulse constraint, as compared to the nominal configuration.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A hybridized discontinuous Galerkin method on mapped deforming domains

Here in this paper we present a hybridized discontinuous Galerkin (HDG) discretization for unsteady simulations of convection-dominated flows on mapped deforming domains. Mesh deformation is achieved through an arbitrary Lagrangian-Eulerian transformation with an analytical mapping. We present details of this transformation applied to the HDG system of equations, with focus on the auxiliary gradient equation, viscous stabilization, and output calculation. We discuss conditions under which optimal unsteady output convergence rates can be attained, and we show that both HDG and discontinuous Galerkin (DG) achieve these rates in advection-dominated flows. Results for scalar advection-diffusion and the Euler equations verify the implementation of the mesh motion mapping for both discretizations, show that HDG and DG yield similar results on a given mesh, and demonstrate differences in output convergence rates depending on the choice of HDG viscous stabilization. We note that such similar results bode well for HDG, which has fewer globally-coupled degrees of freedom compared to DG. A simulation of the unsteady compressible Navier-Stokes equations demonstrates again very similar results for HDG and DG and illustrates a pitfall of using steady-state adapted meshes for accurate unsteady simulations.

42 ENGINEERING↗

Mineralogy, fabric and deformation domains in D" across the southwestern border of the African LLSVP

Recent advances in seismic anisotropy studies that jointly use reflections and shear wave splitting have proven to place tight constraints on the plausible anisotropic and deformation scenarios in the D" region. We apply this novel methodology to a large area of the D" region beneath the South Atlantic, in proximity to and within the African large low seismic velocity province (LLSVP). This area of the mantle is characterized by a transition from fast to slow seismic velocity anomalies and it is thought to be the location of deep-seated plumes responsible for hotspot volcanism. Attempting to probe mantle composition and deformation along the LLSVP borders may provide key information on mantle dynamics. By analysing seismic phases sampling this region, we detect a D" discontinuity over a large area beneath the South Atlantic, with inferred depth ranges ~170 to ~240 km above the core–mantle boundary. We find evidence for a D" reflector within the area of the LLSVP. Shear wave splitting observations suggest that anisotropy is present in this region of the mantle, in agreement with previous studies that partially sampled this region. We model the observations considering lattice- and shape-preferred orientation of materials expected in the D" region. A regional variation of mineralogy, phase transition boundaries, and deformation direction is required to explain the data. We infer two distinct domains of mineralogy and deformation: aligned post-perovskite outside the LLSVP and aligned bridgmanite within the LLSVP. Finally, the scenario depicted by this study agrees well with the current hypotheses for the composition of the LLSVP and with the prevalence of vertical deformation directions expected to occur along the LLSVPs borders.

58 GEOSCIENCES↗

A numerical approach for simulating fluid structure interaction of flexible thin shells undergoing arbitrarily large deformations in complex domains

We present a new numerical methodology for simulating fluid–structure interaction (FSI) problems involving thin flexible bodies in an incompressible fluid. The FSI algorithm uses the Dirichlet–Neumann partitioning technique. The curvilinear immersed boundary method (CURVIB) is coupled with a rotation-free finite element (FE) model for thin shells enabling the efficient simulation of FSI problems with arbitrarily large deformation. Turbulent flow problems are handled using large-eddy simulation with the dynamic Smagorinsky model in conjunction with a wall model to reconstruct boundary conditions near immersed boundaries. The CURVIB and FE solvers are coupled together on the flexible solid–fluid interfaces where the structural nodal positions, displacements, velocities and loads are calculated and exchanged between the two solvers. Loose and strong coupling FSI schemes are employed enhanced by the Aitken acceleration technique to ensure robust coupling and fast convergence especially for low mass ratio problems. The coupled CURVIB-FE-FSI method is validated by applying it to simulate two FSI problems involving thin flexible structures: 1) vortex-induced vibrations of a cantilever mounted in the wake of a square cylinder at different mass ratios and at low Reynolds number; and 2) the more challenging high Reynolds number problem involving the oscillation of an inverted elastic flag. For both cases the computed results are in excellent agreement with previous numerical simulations and/or experiential measurements. Grid convergence tests/studies are carried out for both the cantilever and inverted flag problems, which show that the CURVIB-FE-FSI method provides their convergence. Finally, the capability of the new methodology in simulations of complex cardiovascular flows is demonstrated by applying it to simulate the FSI of a tri-leaflet, prosthetic heart valve in an anatomic aorta and under physiologic pulsatile conditions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Reports on block rotations, fault domains and crustal deformation

Studies of block rotations, fault domains and crustal deformation in the western United States, Israel, and China are discussed. Topics include a three-dimensional model of crustal fracture by distributed fault sets, distributed deformation and block rotation in 3D, stress field rotation, and multiple strike slip fault sets.

Nur, Amos↗

A reduced basis approach for PDEs on parametrized geometries based on the shifted boundary finite element method and application to a Stokes flow

Here we propose a model order reduction technique integrating the Shifted Boundary Method (SBM) with a POD-Galerkin strategy. This approach allows to deal with complex parametrized domains in an efficient and straightforward way. The impact of the proposed approach is threefold. First, problems involving parametrizations of complex geometrical shapes and/or large domain deformations can be efficiently solved at full-order by means of the SBM. This unfitted boundary method permits to avoid remeshing and the tedious handling of cut cells by introducing an approximate surrogate boundary. Second, the computational effort is reduced by the development of a Reduced Order Model (ROM) technique based on a POD-Galerkin approach. Third, the SBM provides a smooth mapping from the true to the surrogate domain, and for this reason, the stability and performance of the reduced order basis are enhanced. This feature is the net result of the combination of the proposed ROM approach and the SBM. Similarly, the combination of the SBM with a projection-based ROM gives the great advantage of an easy and fast to implement algorithm considering geometrical parametrization with large deformations. The transformation of each geometry to a reference geometry (morphing) is in fact not required. These combined advantages will allow the solution of PDE problems more efficiently. We illustrate the performance of this approach on a number of two-dimensional Stokes flow problems.

42 ENGINEERING↗

Mesh Deformation Boundary Conditions for Three-Dimensional Ablation Solvers

A method for determining boundary node displacements for three-dimensional ablation solvers is developed. The approach is applicable to a wide range of mesh motion algorithms used to determine internal node displacements. The method leverages radial basis functions to analytically define the geometry to which the boundary nodes should be constrained. Constrained optimization, elasticity, and spring analogy solvers are utilized to redistribute the nodes on the evolved geometry surface while maintaining mesh quality. The method is implemented in the CHarring Ablator Response (CHAR) code, and a realistic demonstration case is presented on the Boundary Layer Transition (BOLT) flight experiment configuration. The method is shown to be robust for highly-curved geometries with large domain deformations.

Adam J Amar↗

Finite Element Methods for real-time Haptic Feedback of Soft-Tissue Models in Virtual Reality Simulators

We have applied the linear elastic finite element method to compute haptic force feedback and domain deformations of soft tissue models for use in virtual reality simulators. Our results show that, for virtual object models of high-resolution 3D data (>10,000 nodes), haptic real time computations (>500 Hz) are not currently possible using traditional methods. Current research efforts are focused in the following areas: 1) efficient implementation of fully adaptive multi-resolution methods and 2) multi-resolution methods with specialized basis functions to capture the singularity at the haptic interface (point loading). To achieve real time computations, we propose parallel processing of a Jacobi preconditioned conjugate gradient method applied to a reduced system of equations resulting from surface domain decomposition. This can effectively be achieved using reconfigurable computing systems such as field programmable gate arrays (FPGA), thereby providing a flexible solution that allows for new FPGA implementations as improved algorithms become available. The resulting soft tissue simulation system would meet NASA Virtual Glovebox requirements and, at the same time, provide a generalized simulation engine for any immersive environment application, such as biomedical/surgical procedures or interactive scientific applications.

Frank, Andreas O.↗

Local element operations for curved simplex meshes

Summary Mesh optimization procedures are generally a combination of node smoothing and discrete operations which affect a small number of elements to improve the quality of the overall mesh. These procedures are useful as a post‐processing step in mesh generation procedures and in applications such as fluid simulations with severely deforming domains. In order to perform high‐order mesh optimization, these ingredients must also be extended to high‐order (curved) meshes. In this work, we present a method to perform local element operations on curved meshes. The mesh operations discussed in this work are edge/face swaps, edge collapses, and edge splitting (more generally refinement) for triangular and tetrahedral meshes. These local operations are performed by first identifying the patch of elements which contain the edge/face being acted on, performing the operation as a “straight‐sided one" by placing the high‐order nodes via an isoparametric mapping from the master element, and smoothing the high‐order nodes on the elements in the patch by minimizing a Jacobian‐based high‐order mesh distortion measure. Since the initial “straight‐sided guess” from the placement of the nodes via the isoparametric mapping frequently results in invalid elements, the distortion measure must be regularized which allows for mesh untangling for the optimization to succeed. We present several examples in 2D and 3D to demonstrate these local operations and how they can be combined with a high‐order node smoothing procedure to maintain mesh quality when faced with severe deformations.

Shi, A.↗

Block rotations, fault domains and crustal deformation

Much of the earth's crust is broken by sets of parallel strike-slip faults which are organized in domains. A simple kinematic model suggests that when subject to tectonic strain, the faults, and the blocks bound by them, rotate. The rotation can be estimated from the structurally-determined fault slip and fault spacing, and independently from local deviations of paleomagnetic declinations from global values. A rigorous test of this model was carried out in northern Israel, where good agreement was found between the two rotations.

Nur, A.↗

Block rotations, fault domains and crustal deformation in the western US

The aim of the project was to develop a 3D model of crustal deformation by distributed fault sets and to test the model results in the field. In the first part of the project, Nur's 2D model (1986) was generalized to 3D. In Nur's model the frictional strength of rocks and faults of a domain provides a tight constraint on the amount of rotation that a fault set can undergo during block rotation. Domains of fault sets are commonly found in regions where the deformation is distributed across a region. The interaction of each fault set causes the fault bounded blocks to rotate. The work that has been done towards quantifying the rotation of fault sets in a 3D stress field is briefly summarized. In the second part of the project, field studies were carried out in Israel, Nevada and China. These studies combined both paleomagnetic and structural information necessary to test the block rotation model results. In accordance with the model, field studies demonstrate that faults and attending fault bounded blocks slip and rotate away from the direction of maximum compression when deformation is distributed across fault sets. Slip and rotation of fault sets may continue as long as the earth's crustal strength is not exceeded. More optimally oriented faults must form, for subsequent deformation to occur. Eventually the block rotation mechanism may create a complex pattern of intersecting generations of faults.

Nur, Amos↗

Deformation accommodating periodic computational domain for a uniform velocity gradient

Many multiscale methods for granular materials use periodic computational domains to consider particle scale interactions and then calculate the stress to drive the continuum scale calculations. For problems involving large material deformations, the computation domain often needs to be reinitialized because of the distortion, causing the loss of the history information of the system. This work introduces an algorithm to accommodate a large deformation of the material while maintaining the computational domain cuboid to avoid the domain reinitialization during the computation. The algorithm uses a rotating frame of reference, in which the velocity gradient can be represented by an upper triangular matrix. The deformation caused by the upper triangular matrix is treated by the image system implied in the periodicity to maintain the computational domain cuboid. The effect from the rotation of the reference frame is considered using the inertial forces. Finally, simulations of simple and pure shear motions are carried out to illustrate the algorithm.

42 ENGINEERING↗

The Gearbox of the Bacterial Flagellar Motor Switch

Switching of flagellar motor rotation sense dictates bacterial chemotaxis. Multi-subunit FliM-FliG rotor rings couple signal protein binding in FliM with reversal of a distant FliG C-terminal (FliGC) helix involved in stator contacts. Subunit dynamics were examined in conformer ensembles generated by molecular simulations from the X-ray structures. Principal component analysis extracted collective motions. Interfacial loop immobilization by complex formation coupled elastic fluctuations of the FliM middle (FliMM) and FliG middle (FliGM) domains. Coevolved mutations captured interfacial dynamics as well as contacts. FliGM rotation was amplified via two central hinges to the FliGC helix. Intrinsic flexibility, reported by the FliGMC ensembles, reconciled conformers with opposite FliGC helix orientations. FliG domain stacking deformed the inter-domain linker and reduced flexibility; but conformational changes were not triggered by engineered linker deletions that cause a rotation-locked phenotype. These facts suggest that binary rotation states arise from conformational selection by stacking interactions.

59 BASIC BIOLOGICAL SCIENCES↗

Atomic Resolution Probing of Phase Transformations and Domain Evolution During Large Superelastic Deformation in Ferroelectrics with in situ TEM

Intrinsically brittle Ferroelectrics have attractive applications such as flexible/wearable electronic devices and mechanically-written high-density memory that depend on both functional and mechanical performance. One potential way to mitigate their brittle behavior is through large superelastic deformation stemming from strain-driven phase transformations and domain evolution. Therefore, in this work, we investigated free-standing single-crystal BaTiO 3 and Pb(Mg 1/3 Nb 2/3 )O 3 -PbTiO 3 sub-micrometer pillars during large superelastic deformation, directly observing the stress-induced phase transformations and domain evolution by using in situ Scanning Transmission Electron Microscope (STEM). We found ultra-small and multiple-phase coexistence with sizes down to a few unit cells, and we were able to study them at atomic resolution while under load. Notably, extremely small phase transformation structures and domain structures are often introduced during the large superelastic deformations since the stress field is not screened in ferroelectrics, as compared to the situation with electrical field or thermal cycling.

36 MATERIALS SCIENCE↗

Volumetric Density-Equalizing Reference Map with Applications

The density-equalizing map, a technique developed for cartogram creation, has been widely applied to data visualization but only for 2D applications. Here, we propose a novel method called the volumetric density-equalizing reference map (VDERM) for computing density-equalizing map for volumetric domains. Given a prescribed density distribution in a volumetric domain in $\mathbb{R}^3$, the proposed method continuously deforms the domain, with different volume elements enlarged or shrunk according to the density distribution. With the aid of the proposed method, medical and sociological data can be visualized via deformations of 3D objects. The method can also be applied to adaptive remeshing and shape modeling. Furthermore, by exploiting the time-dependent nature of the proposed method, applications to shape morphing can be easily achieved. Experimental results are presented to demonstrate the effectiveness of the proposed method.

97 MATHEMATICS AND COMPUTING↗

Evaluating Effects of Shear Processing on 2D Crystalline Materials in 3D Metal Matrices: Atomistic Understanding of High Shear Deformation of Copper Graphene Composites

Composites made of copper and graphene demonstrate high strength, lubricity and enhanced electrical and thermal conductivity compared pure copper. However, manufacturing these composites at bulk volumes for industrial applications has been a big challenge. Shear deformation assisted processing is an effective method for manufacturing materials such as copper-graphene composites demonstrating ultra-fine grain structures and compositional homogeneity. Nevertheless, microstructural evolution of the composites and their property development under such conditions is not clearly understood currently. To rectify this gap in literature, high strain shear deformation of copper coated graphene foils was performed using a tribometer pin in this study. Changes in microstructure of the composite as well as the constituent components under shear deformation was correlated to process conditions. A sharp increase in the coefficient of friction attributed to rupture and smearing of graphene layer into copper substrate was observed during the shear processing. The coefficient of friction of the sheared copper/graphene composite was lower than that of pure copper, suggesting that partially worn graphene is effectively lubricious at the macroscale. A multimodal characterization of the processed region further revealed a shear deformation-induced ultrafine two-phase grain-structure consisting of copper and graphitic domains. Shear deformation reduced the copper grain size from around 50 – 100 µm to ~200 nm on an average and ~2 – 5 nm in some locations. The semicrystalline graphene films were observed to fracture into 10 – 50 µm size flakes. Oxygen enrichment was observed in the processed region. Finally, graphitic domain were identified for the first time in the copper matrix and not just at the grain boundaries providing evidence for a metastable composite microstructure as a result of solid phase processing at room temperature.

36 MATERIALS SCIENCE↗

Enhancing Scalability for FUN3D Rotorcraft Simulations with Yoga: an Overset Grid Assembler

FUN3D, an unstructured grid Navier-Stokes CFD code is capable of overset grid simu- lations, but does not have an internal method for assembling an overset grid system from a group of component grids. FUN3D currently relies on the third party codes Suggar++ and DiRTlib to perform domain assembly and provide intergrid connectivity for overset simulations. Rotorcraft simulations with moving, deforming blades require domain assembly and mesh deformation at each time step. For these simulations, the three primary drivers of computational cost for each time step are: deforming the mesh, performing domain assembly, and performing subiterations of the flow solver. FUN3D exhibits strong and weak scalability for the flow solver subiterations and the mesh deformation. However, FUN3D is currently hardwired directly to the serial version of Suggar++, which has a fixed cost for a given mesh system. Therefore, domain assembly begins to dominate the total cost of each time step as grid systems become larger. An integrated method for parallel domain assembly is presented that addresses scalability for large grid systems. Restructuring within FUN3D to accommodate integrated domain assembly is also discussed, which could enable use of the parallel Suggar++ library.

Cameron T Druyor↗