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At least 19 records

Benthic Marine Cyanobacterial Mat Ecosystems: Biogeochemistry and Biomarkers

Cyanobacterial mats are complete ecosystems that can include processes of primary production, diagenesis and lithification. Light sustains oxygenic photosynthesis, which in turn provides energy, organic matter and oxygen to the community. Due to both absorption and scattering phenomena, incident light is transformed with depth in the mat, both in intensity and spectral composition. Mobile photo synthesizers optimize their position with respect to this light gradient. When photosynthesis ceases at night, the upper layers of the mat become reduced and sulfidic. Counteracting gradients of oxygen and sulfide combine to provide daily-contrasting environments separated on a scale of a few mm. The functional complexity of mats, coupled with the highly proximal and ordered spatial arrangement of biota, offers the potential for a staggering number of interactions. At a minimum, the products of each functional group of microorganisms affect the other groups both positively and negatively. For example, cyanobacteria generate organic matter (potential substrates) but also oxygen (a toxin for many anaerobes). Anaerobic activity recycles nutrients to the photosynthesizers but also generates potentially toxic sulfide. The combination of benefits and hazards of light, oxygen and sulfide promotes the allocation of the various essential mat processes between light and dark periods, and to various depths in the mat. Observations of mats have produced numerous surprises. For example, obligately anaerobic processes can occur in the presence of abundant oxygen, highly reduced gases are produced in the presence of abundant sulfate, meiofauna thrive at high sulfide concentrations, and the mats' constituent populations respond to environmental changes in complex ways. While photosynthetic bacteria dominate the biomass and productivity of the mat, nonphotosynthetic, anaerobic processes constitute the ultimate biological filter on the ecosystem's emergent biosignatures, including those sedimentary textures, organic compounds, and minerals that enter the fossil record. The ability of cyanobacterial mats to channel abundant solar energy into the creation and maintenance of complex structures and processes has created a multitude of consequences, both for sedimentation and for the early evolution of our biosphere.

DesMarais, David J.↗

Uncertainty Quantification of Global Net Methane Emissions From Terrestrial Ecosystems Using a Mechanistically Based Biogeochemistry Model

Quantification of methane (CH4) emissions from wetlands and its sinks from uplands is still fraught with large uncertainties. Here, a methane biogeochemistry model was revised, parameterized, and verified for various wetland ecosystems across the globe. The model was then extrapolated to the global scale to quantify the uncertainty induced from four different types of uncertainty sources including parameterization, wetland type distribution, wetland area distribution, and meteorological input. We found that global wetland emissions are 212 ± 62 and 212 ± 32 Tg CH4 year−1 (1Tg = 1012 g) due to uncertain parameters and wetland type distribution, respectively, during 2000–2012. Using two wetland distribution data sets and three sets of climate data, the model simulations indicated that the global wetland emissions range from 186 to 212 CH4 year−1 for the same period. The parameters were the most significant uncertainty source. After combining the global methane consumption in the range of −34 to −46 Tg CH4 year−1, we estimated that the global net land methane emissions are 149–176 Tg CH4 year−1 due to uncertain wetland distribution and meteorological input. Spatially, the northeast United States and Amazon were two hotspots of methane emission, while consumption hotspots were in the Eastern United States and eastern China. During 1950–2016, both wetland emissions and upland consumption increased during El Niño events and decreased during La Niña events. This study highlights the need for more in situ methane flux data, more accurate wetland type, and area distribution information to better constrain the model uncertainty.

wetland methane emission↗

Hydrogen Biogeochemistry in Anaerobic and Photosynthetic Ecosystems

The simple biochemistry of molecular hydrogen is central to a large number of microbial processes, affecting the interaction of organisms with each other and with the environment. In anoxic sediments, a great majority of microbial redox processes involve hydrogen as a reactant, product or potential by-product. Accordingly, the energetics (thermodynamics) of each of these processes is affected by variations in local H2 concentrations. It has long been established that this effect is important in governing microbe-microbe interactions and there are multiple demonstrations that "interspecies hydrogen transfer" can alter the products of, inhibit/stimulate, or even reverse microbial metabolic reactions. In anoxic sediments, H2 concentrations themselves are thought to be controlled by the thermodynamics of the predominant H2-consuming microbial process. In sediments from Cape Lookout Bight, this relationship quantitatively describes the co-variation of H2 concentrations with temperature (for methanogens and sulfate reducers) and with sulfate concentration (for sulfate reducers). The quantitative aspect is import= for two reasons: 1) it permits the modeling of H2-sensitive biogeochemistry, such as anaerobic methane oxidation or pathways of organic matter remineralization, as a function of environmental controls; 2) for such a relationship to be observed requires that intracellular biochemistry and bioenergetics are being directly expressed in a component of the extracellular medium. H2 could therefore be utilized a non-invasive probe of cellular energetic function in intact microbial ecosystems. Based on the latter principle we have measured down-core profiles of H2 and other relevant physico-chemical parameters in order to calculate the metabolic energy yields (DG) that support microbial metabolism in Cape Lookout Bight sediments. Methanogens in this system apparently function with energy yields significantly smaller than the minimum requirements suggested by pure culture studies. Our recent work has extended the study of hydrogen to cyanobacterial mat communities. The large amounts of reducing power generated during photosynthetic activity carry the potential to contribute a swamping term to the H2 economy of the anaerobic microbial populations within the mat - and thereby to alter the population structure and biogeochemical function of the mat as a whole. In hypersaline microbial mats, we observe a distinct diel cycle in H2 production and a substantial corresponding flux. On an early Earth dominated by microbial mats, this transmission of photosynthetic reducing power may have carried important implications for both biospheric and atmospheric evolution.

Hoehler, Tori M.↗

PACE: How One NASA Mission Aligns With the United Nations Decade of Ocean Science for Sustainable Development (Ocean Shot #2)

The PACE satellite observatory will follow a Sun synchronous, polar orbit at an altitude of 676.5 km with a local 13:00 Equatorial crossing time. Its payload consists of three instruments, a primary hyperspectral imaging radiometer being built at NASA Goddard Space Flight Center and two multispectral, multiangle polarimeters, the combination of which advances far beyond heritage capabilities. The Ocean Color Instrument (OCI) offers one-day global coverage with a ground sample distance of 1 km2 at nadir. As described in this OceanShot, this leap in technology will enable improved understanding of aquatic ecosystems and biogeochemistry, as well as provide new information on phytoplankton community composition and improved detection of algal blooms. OCI will be complemented by two small multi-angle polarimeters with spectral ranges that span the visible to near infrared spectral region. When sunlight interacts with clouds or aerosols, it comes away from that interaction changed. By measuring changes in how reflected light oscillates within a geometric plane (i.e., its viewing angle-specific polarization), we can infer useful properties of the clouds or aerosols. This information is crucial to deciphering the way sunlight is reflected and absorbed by our planet and how aerosols affect cloud formation. The polarimeters include the Spectro-polarimeter for Planetary Exploration (SPEXone) and the Hyper Angular Research Polarimeter (HARP2), both of which will significantly improve aerosol and cloud characterizations and provide opportunities for novel ocean color atmospheric correction. (Figure 3). These instruments offer complementary capabilities: SPEXone is hyperspectral, multiangular, and narrow swath to support advanced atmospheric aerosol characterizations, whereas HARP2 is multispectral, hyper-angular, and wide swath to advance cloud property retrievals. In total, the combined PACE instrument suite will revolutionize studies of global biogeochemistry, carbon cycles, and air–sea exchanges in the ocean–atmosphere system.

Ocean color↗

Regional Application of an Ecosystem Production Model for Studies of Biogeochemistry in the...

The degree to which primary production, soil carbon, and trace gas fluxes in tropical forests of the Amazon are limited by moisture availability and other environmental factors was examined using an ecosystem modeling application for the country of Brazil. A regional geographic information system (GIS) serves as the data source of climate drivers, satellite images, land cover, and soil properties for input to the NASA Ames-CASA (Carnegie-Ames-Stanford Approach) model over a 8-km grid resolution. Simulation results supports the hypothesis that net primary production (NPP) is limited by cloud interception of solar radiation over the humid northwestern portion of the region. Peak annual rates for NPP of nearly 1.4 kg C m-2yr -1are localized in the seasonally dry eastern Amazon in areas that we assume are primarily deep-rooted evergreen forest cover. Regional effects of forest conversion on NPP and soil carbon content are indicated in the model results, especially in seasonally dry areas. Comparison of model flux predictions along selected eco-climatic transects reveal moisture, soil, and land use controls on gradients of ecosystem production and soil trace gas emissions (CO2, N2O, and NO). These results are used to formulate a series of research hypotheses for testing in the next phase of regional modeling, which includes recalibration of the light-use efficiency term in CASA using field measurements of NPP, and refinements of vegetation index and soil property (texture and potential rooting depth) maps for the region.

Potter, C. S.↗

Lidar Remote Sensing of Forests: New Instruments and Modeling Capabilities

Lidar instruments provide scientists with the unique opportunity to characterize the 3D structure of forest ecosystems. This information allows us to estimate properties such as wood volume, biomass density, stocking density, canopy cover, and leaf area. Structural information also can be used as drivers for photosynthesis and ecosystem demography models to predict forest growth and carbon sequestration. All lidars use time-in-flight measurements to compute accurate ranging measurements; however, there is a wide range of instruments and data types that are currently available, and instrument technology continues to advance at a rapid pace. This seminar will present new technologies that are in use and under development at NASA for airborne and space-based missions. Opportunities for instrument and data fusion will also be discussed, as Dr. Cook is the PI for G-LiHT, Goddard's LiDAR, Hyperspectral, and Thermal airborne imager. Lastly, this talk will introduce radiative transfer models that can simulate interactions between laser light and forest canopies. Developing modeling capabilities is important for providing continuity between observations made with different lidars, and to assist the design of new instruments. Dr. Bruce Cook is a research scientist in NASA's Biospheric Sciences Laboratory at Goddard Space Flight Center, and has more than 25 years of experience conducting research on ecosystem processes, soil biogeochemistry, and exchange of carbon, water vapor and energy between the terrestrial biosphere and atmosphere. His research interests include the combined use of lidar, hyperspectral, and thermal data for characterizing ecosystem form and function. He is Deputy Project Scientist for the Landsat Data Continuity Mission (LDCM); Project Manager for NASA s Carbon Monitoring System (CMS) pilot project for local-scale forest biomass; and PI of Goddard's LiDAR, Hyperspectral, and Thermal (G-LiHT) airborne imager.

Cook, Bruce D.↗

Sensitivity of Ocean Reflectance Inversion Models for Identifying and Discriminating Between Phytoplankton Functional Groups

The daily, synoptic images provided by satellite ocean color instruments provide viable data streams for observing changes in the biogeochemistrY of marine ecosystems. Ocean reflectance inversion models (ORMs) provide a common mechanism for inverting the "color" of the water observed a satellite into marine inherent optical properties (lOPs) through a combination of empiricism and radiative transfer theory. lOPs, namely the spectral absorption and scattering characteristics of ocean water and its dissolved and particulate constituents, describe the contents of the upper ocean, information critical for furthering scientific understanding of biogeochemical oceanic processes. Many recent studies inferred marine particle sizes and discriminated between phytoplankton functional groups using remotely-sensed lOPs. While all demonstrated the viability of their approaches, few described the vertical distributions of the water column constituents under consideration and, thus, failed to report the biophysical conditions under which their model performed (e.g., the depth and thickness of the phytoplankton bloom(s)). We developed an ORM to remotely identifY Noctiluca miliaris and other phytoplankton functional types using satellite ocean color data records collected in the northern Arabian Sea. Here, we present results from analyses designed to evaluate the applicability and sensitivity of the ORM to varied biophysical conditions. Specifically, we: (1) synthesized a series of vertical profiles of spectral inherent optical properties that represent a wide variety of bio-optical conditions for the northern Arabian Sea under aN Miliaris bloom; (2) generated spectral remote-sensing reflectances from these profiles using Hydrolight; and, (3) applied the ORM to the synthesized reflectances to estimate the relative concentrations of diatoms and N Miliaris for each example. By comparing the estimates from the inversion model to those from synthesized vertical profiles, we were able to identifY those bio-optical conditions under which the inversion model performs both well and poorly.

Werdell, P. Jeremy↗

Satellite Remote Sensing: Ocean Color

Satellite ocean color instruments routinely provide global, synoptic views of the Earth's marine biosphere. These spaceborne radiometers measure light exiting the top of the atmosphere at discrete wavelengths in the ultraviolet to shortwave infrared region of the spectrum. This includes measurements of the color of the ocean - information used to infer the contents of the sunlit upper ocean, such as concentrations of phytoplankton, suspended sediments, and dissolved organic carbon. Continuous marine biological, ecological, and biogeochemical data records from satellite ocean color instruments now span over twenty years. This time-series not only supports Earth system and climate research, but also ecosystem and watershed management activities, including detection of nuisance and harmful algal blooms.

Biosphere↗

The Arctic-Boreal vulnerability experiment model benchmarking system

NASA's Arctic-Boreal Vulnerability Experiment (ABoVE) integrates field and airborne data into modeling and synthesis activities for understanding Arctic and Boreal ecosystem dynamics. The ABoVE Benchmarking System (ABS) is an operational software package to evaluate terrestrial biosphere models against key indicators of Arctic and Boreal ecosystem dynamics, i.e.: carbon biogeochemistry, vegetation, permafrost, hydrology, and disturbance. The ABS utilizes satellite remote sensing data, airborne data, and field data from ABoVE as well as collaborating research networks in the region, e.g.: the Permafrost Carbon Network, the International Soil Carbon Network, the Northern Circumpolar Soil Carbon Database, AmeriFlux sites, the Moderate Resolution Imaging Spectroradiometer, the Orbiting Carbon Observatory 2, and the Soil Moisture Active Passive mission. The ABS is designed to be interactive for researchers interested in having their models accurately represent observations of key Arctic indicators: a user submits model results to the system, the system evaluates the model results against a set of Arctic-Boreal benchmarks outlined in the ABoVE Concise Experiment Plan, and the user then receives a quantitative scoring of model strengths and deficiencies through a web interface. This interactivity allows model developers to iteratively improve their model for the Arctic-Boreal Region by evaluating results from successive model versions. We show here, for illustration, the improvement of the Lund–Potsdam–Jena-Wald Schnee und Landschaft (LPJwsl) version model through the ABoVE ABS as a new permafrost module is coupled to the existing model framework. The ABS will continue to incorporate new benchmarks that address indicators of Arctic-Boreal ecosystem dynamics as they become available.

ABoVE↗

Imaging Systems Provide Maps for U.S. Soldiers

Spanning nearly four decades, the remarkable Landsat program has continuously provided data about the Earth s surface, including detailed maps of vegetation, land use, forest extent and health, surface water, population distribution, as well as how these features have changed over time. Managed by NASA and the U.S. Geological Survey, Landsat s series of satellites obtain data through passive remote sensing, or the use of sensors to read the energy reflected or emitted from the Earth s surface. After the data from the sensors is processed and analyzed, it can be applied to create information-rich images of the planet. While the Landsat program has launched seven satellites since 1972, only Landsat 5 and 7 are currently operating. The next spacecraft in line to ensure continuity of data for years to come is the Landsat Data Continuity Mission (LDCM). Planned for launch in 2012, LDCM will take measurements of the Earth in visible, nearinfrared, shortwave infrared, and thermal infrared bands. In addition to widespread use for land use planning and monitoring on local to regional scales, support for disaster response and evaluations, as well as water use monitoring, LDCM measurements will directly serve NASA s research in the areas of climate, the carbon cycle, ecosystems, the water cycle, biogeochemistry, and Earth s surface and interior.

Source record↗

BOREAS TGB-1/TGB-3 NEE Data over the NSA Fen

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-1) and TGB-3 teams collected several data sets that contributed to understanding the measured trace gas fluxes over sites in the Northern Study Area (NSA). This data set contains Net Ecosystem Exchange of CO2 (NEE) measurements collected with chambers at the NSA fen in 1994 and 1996. Gas samples were extracted approximately every 7 days from chambers and analyzed at the NSA lab facility. The data are provided in tabular ASCII files.

Bellisario, Lianne↗

Biogeochemistry of hypersaline microbial mats illustrates the dynamics of modern microbial ecosystems and the early evolution of the biosphere

Photosynthetic microbial mats are remarkably complete self-sustaining ecosystems at the millimeter scale, yet they have substantially affected environmental processes on a planetary scale. These mats may be direct descendents of the most ancient biological communities in which even oxygenic photosynthesis might have developed. Photosynthetic mats are excellent natural laboratories to help us to learn how microbial populations associate to control dynamic biogeochemical gradients.

Ecosystem↗

Comparative Ecology of H2 Cycling in Organotrophic and Phototrophic Ecosystems

The simple biochemistry of H2 is critical to a large number of microbial processes, affecting the interaction of organisms with each other and with the environment. The sensitivity of these many processes to H2 can be described quantitatively, at a basic thermodynamic level. This shared dependence on H2 may provide a means for interpreting the ecology and system-level biogeochemistry of widely variant microbial ecosystems on a common (and quantitative) level. Understanding the factors that control H2 itself is a critical prerequisite. Here, we examine two ecosystems that vary widely with respect to H2 cycling. In anoxic, 'organotrophic' sediments from Cape Lookout Bight (North Carolina, USA), H2 partial pressures are strictly maintained at low, steady-state levels by H2-consuming organisms, in a fashion that can be quantitatively predicted by simple thermodynamic calculations. In phototrophic microbial mats from Baja, Mexico, H2 partial pressures are instead controlled by the activity of light-sensitive H2-producing organisms. In consequence, H2 partial pressures within the system fluctuate by orders of magnitude on hour-long time scales. The differences in H2 cycling subsequently impact H2-sensitive microbial processes, such as methanogenesis. For example, the presence of sulfate in the organotrophic system always yielded low levels of H2 that were inhibitory to methanogenesis; however, the elevated levels of H2 in the phototrophic system favored methane production at significant levels, even in the presence of high sulfate concentrations. The myriad of other H2-sensitive microbial processes are expected to exhibit similar behavior.

Hoehler, Tori M.↗

BOREAS TGB-3 Plant Species Composition Data over the NSA Fen

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-3) team collected several data sets that contributed to understanding the measured trace gas fluxes over sites in the Northern Study Area (NSA). This data set contains information about the composition of plant species that were within the collars used to measure Net Ecosystem Exchange of CO2 (NEE). The species composition was identified to understand the differences in NEE among the various plant communities in the NSA fen. The data were collected in July of 1994 and 1996. The data are contained in comma-delimited, ASCII files.

Bubier, Jill L.↗

BOREAS TGB-5 Dissolved Organic Carbon Data from NSA Beaver Ponds

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-5) team collected several data sets related to carbon and trace gas fluxes and concentrations in the Northern Study Area (NSA). This data set contains concentrations of dissolved organic and inorganic carbon species from water samples collected at various NSA sites. In particular, this set covers the NSA Tower Beaver Pond Site and the NSA Gillam Road Beaver Pond Site, including data from all visits to open water sampling locations during the BOREAS field campaigns from April to September 1994. The data are provided in tabular ASCII files.

Bourbonniere, Rick↗

BOREAS TGB-3 CH4 and CO2 Chamber Flux Data over NSA Upland Sites

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-3) team collected methane and carbon dioxide (CH4, CO2) chamber flux measurements at the Northern Study Area (NSA) Fen, Old Black Spruce (OBS), Young Jack Pine (YJP), and auxiliary sites along Gillam Road and the 1989 burn site. Gas samples were extracted from chambers and analyzed at the NSA lab facility approximately every 7 days during May to September 1994 and June to October 1996. The data are provided in tabular ASCII files.

Savage, Kathleen↗