SEARCH · Search NASA
Results for “fingerprinting”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Fingerprinting Interactions between Proteins and Ligands for Facilitating Machine Learning in Drug Discovery
Molecular recognition is fundamental in biology, underpinning intricate processes through specific protein–ligand interactions. This understanding is pivotal in drug discovery, yet traditional experimental methods face limitations in exploring the vast chemical space. Computational approaches, notably quantitative structure–activity/property relationship analysis, have gained prominence. Molecular fingerprints encode molecular structures and serve as property profiles, which are essential in drug discovery. While two-dimensional (2D) fingerprints are commonly used, three-dimensional (3D) structural interaction fingerprints offer enhanced structural features specific to target proteins. Machine learning models trained on interaction fingerprints enable precise binding prediction. Recent focus has shifted to structure-based predictive modeling, with machine-learning scoring functions excelling due to feature engineering guided by key interactions. Notably, 3D interaction fingerprints are gaining ground due to their robustness. Various structural interaction fingerprints have been developed and used in drug discovery, each with unique capabilities. This review recapitulates the developed structural interaction fingerprints and provides two case studies to illustrate the power of interaction fingerprint-driven machine learning. The first elucidates structure–activity relationships in β2 adrenoceptor ligands, demonstrating the ability to differentiate agonists and antagonists. The second employs a retrosynthesis-based pre-trained molecular representation to predict protein–ligand dissociation rates, offering insights into binding kinetics. Despite remarkable progress, challenges persist in interpreting complex machine learning models built on 3D fingerprints, emphasizing the need for strategies to make predictions interpretable. Binding site plasticity and induced fit effects pose additional complexities. Interaction fingerprints are promising but require continued research to harness their full potential.
Do Molecular Fingerprints Identify Diverse Active Drugs in Large-Scale Virtual Screening? (No)
Computational approaches for small-molecule drug discovery now regularly scale to the consideration of libraries containing billions of candidate small molecules. One promising approach to increased the speed of evaluating billion-molecule libraries is to develop succinct representations of each molecule that enable the rapid identification of molecules with similar properties. Molecular fingerprints are thought to provide a mechanism for producing such representations. Here, we explore the utility of commonly used fingerprints in the context of predicting similar molecular activity. We show that fingerprint similarity provides little discriminative power between active and inactive molecules for a target protein based on a known active—while they may sometimes provide some enrichment for active molecules in a drug screen, a screened data set will still be dominated by inactive molecules. We also demonstrate that high-similarity actives appear to share a scaffold with the query active, meaning that they could more easily be identified by structural enumeration. Furthermore, even when limited to only active molecules, fingerprint similarity values do not correlate with compound potency. In sum, these results highlight the need for a new wave of molecular representations that will improve the capacity to detect biologically active molecules based on their similarity to other such molecules.
Explore Information Content Efficiently from Current and Future Hyperspectral Satellite Missions using a Spectral Fingerprinting Method
Hyperspectral remote sensors from current and future missions provide measurements of the Top of Atmosphere (TOA) radiance or reflectance spectra with high information content. For example, the Atmospheric Infrared Sounder (AIRS), together with the Cross-track Infrared Sounder (CrIS), and the Infrared Atmospheric Sounding Interferometer (IASI) have provided more than 20 years radiance measurements with thousands of spectral channels. These measurements will be continued for the next two decades with the same or more advanced hyperspectral sensors. The upcoming missions such as NASA’s CLARREO Pathfinder (CPF) and ESA’s TRUTHS will provide unprecedented accurate TOA hyperspectral radiance measurements in solar spectral region. Traditional ways to derive Climate Data Records (CDRs) from these measurements are performing spatial and temporal averages of the retrieved Level-2 products. However, it is a time-consuming process to generate decades of Level-2 data from Level-1 data. Furthermore, the differences in Level-2 algorithms used for different satellite sensors will introduce errors in derived CDRs. In this presentation, we will describe a spectral fingerprinting method to generate high-quality CDRs directly from spatiotemporally averaged Level-1 data. By using consistent radiative kernels which contain the spectral information of various atmospheric and surface CDRs, we can reduce the errors due to algorithm inconsistency. Additionally, the spectral fingerprinting method reduces the time needed to generate CDRs by more than three orders of magnitude. This makes it easy to reprocess CDRs once the Level-1 data from different satellites have been improved via either re-calibrations or inter-satellite calibrations. We will present results of applying spectral fingerprinting method to 20-years of AIRS and CrIS data. The resulting CDRs include: 1) vertical profiles of atmospheric temperature and water vapor, 2) cloud properties such as optical depth, effective size, and height, 3) vertical profiles or column amounts for atmospheric trace gases such as O3 and CO, and 4) surface emissivity spectra and skin temperatures. These CDRs will be publicly available at NASA GES DISC in late 2024. The same fingerprinting method is planned to be applied to future CPF and TRUTHS data for solar spectral region.
Exceptional stratospheric contribution to human fingerprints on atmospheric temperature
In 1967, scientists used a simple climate model to predict that human-caused increases in atmospheric CO 2 should warm Earth’s troposphere and cool the stratosphere. This important signature of anthropogenic climate change has been documented in weather balloon and satellite temperature measurements extending from near-surface to the lower stratosphere. Stratospheric cooling has also been confirmed in the mid to upper stratosphere, a layer extending from roughly 25 to 50 km above the Earth’s surface (S 25 − 50 ). To date, however, S 25 − 50 temperatures have not been used in pattern-based attribution studies of anthropogenic climate change. Here, we perform such a “fingerprint” study with satellite-derived patterns of temperature change that extend from the lower troposphere to the upper stratosphere. Including S 25 − 50 information increases signal-to-noise ratios by a factor of five, markedly enhancing fingerprint detectability. Key features of this global-scale human fingerprint include stratospheric cooling and tropospheric warming at all latitudes, with stratospheric cooling amplifying with height. In contrast, the dominant modes of internal variability in S 25 − 50 have smaller-scale temperature changes and lack uniform sign. These pronounced spatial differences between S 25 − 50 signal and noise patterns are accompanied by large cooling of S 25 − 50 (1 to 2 ° C over 1986 to 2022) and low S 25 − 50 noise levels. Our results explain why extending “vertical fingerprinting” to the mid to upper stratosphere yields incontrovertible evidence of human effects on the thermal structure of Earth’s atmosphere.
Transformer Masked Autoencoders for RF Device Fingerprinting
Machine learning methods for RF device fingerprinting typically rely on CNN-based models. Transformer-based models have outperformed CNNs for modulation classification tasks, but there are few implementations for device fingerprinting. We train a transformer for device fingerprinting with the largest device count to date and explore several variations of the architecture. Additionally, we demonstrate that pre-training an RF transformer as a Masked Autoencoder improves classification accuracy, as has been observed for CNN fingerprinting models and vision transformers.
A detection of the sea level fingerprint of Greenland Ice Sheet melt
Rapid melting of ice sheets and glaciers drives a unique geometry, or fingerprint, of sea level change. However, the detection of individual fingerprints has been challenging because of sparse observations at high latitudes and the difficulty of disentangling ocean dynamic variability from the signal. Here we predict the fingerprint of Greenland Ice Sheet (GrIS) melt using recent ice mass loss estimates from radar altimetry data and model reconstructions of nearby glaciers and compare this prediction to an independent, altimetry-derived sea surface height trend corrected for ocean dynamic variability in the region adjacent to the ice sheet. A statistically significant correlation between the two fields (P < 0.001) provides an unambiguous observational detection of the near-field sea level fingerprint of recent GrIS melting in our warming world.
The Fingerprints of Stratospheric Aerosol Injection in E3SM
The June 15, 1991 Mt. Pinatubo eruption is simulated in E3SM by injecting 10 Tg of SO 2 gas in the stratosphere, turning off prescribed volcanic aerosols, and enabling E3SM to treat stratospheric volcanic aerosols prognostically. This experimental prognostic treatment of volcanic aerosols in the stratosphere results in some realistic behaviors (SO 2 evolves into H 2 SO 4 which heats the lower stratosphere), and some expected biases (H 2 SO 4 aerosols sediment out of the stratosphere too quickly). Climate fingerprinting techniques are used to establish a Mt. Pinatubo fingerprint based on the vertical profile of temperature from the E3SMv1 DECK ensemble. By projecting reanalysis data and preindustrial simulations onto the fingerprint, the Mt. Pinatubo stratospheric heating anomaly is detected. Projecting the experimental prognostic aerosol simulation onto the fingerprint also results in a detectable heating anomaly, but, as expected, the duration is too short relative to reanalysis data.
Fingerprinting of Materials: Technical Supplement
This supplement to the Guidelines for Maintaining a Chemical Fingerprinting Program has been developed to assist NASA personnel, contractors, and sub-contractors in defining the technical aspects and basic concepts which can be used in chemical fingerprinting programs. This material is not meant to be totally inclusive to all chemical fingerprinting programs, but merely to present current concepts. Each program will be tailored to meet the needs of the individual organizations using chemical fingerprinting to improve their quality and reliability in the production of aerospace systems.
Chemical Fingerprinting of Materials Developed Due to Environmental Issues
Instrumental chemical analysis methods are developed and used to chemically fingerprint new and modified External Tank materials made necessary by changing environmental requirements. Chemical fingerprinting can detect and diagnose variations in material composition. To chemically characterize each material, fingerprint methods are selected from an extensive toolbox based on the material's chemistry and the ability of the specific methods to detect the material's critical ingredients. Fingerprint methods have been developed for a variety of materials including Thermal Protection System foams, adhesives, primers, and composites.
A Radiometric Consistent Spectral Fingerprinting Algorithm for Continuity Products of Hyperspectral Sounders
A radiometric consistent climate fingerprinting methodology has been developed to derive long-term temperature, water vapor, cloud, trace gases, and surface skin temperature anomaly time series from the hyper-spectral sounder measurements of multiple platforms. The spectral fingerprinting methodology requires the use of radiative kernels that are radiometrically consistent with observations. Radiative kernels are built using space-time averaged Jacobians that are physically retrieved from observations under all sky conditions. The physical retrieval algorithm uses the Principal Component based Radiative Transfer Model (PCRTM) for the forward simulation. The incorporation of multiple scattering simulation in PCRTM allows the direct radiative relationship between single field-of-view (FOV) radiance observations and corresponding thermal dynamic variables including cloud properties to be established. Therefore, radiance ?closure? can be achieved under all-sky conditions by the fingerprinting scheme. This methodology has been used to derive climate anomalies from the space-time averaged spectra of AIRS/AMSU and CrIS/ATMS. The use of a consistent fingerprinting scheme provides an effective mean of generating continuity product by merging observations from different platforms and therefore facilitating the long-term climate trend study.
Materials Fingerprinting Classification
Significant progress in many classes of materials could be made with the availability of experimentally-derived large datasets composed of atomic identities and three-dimensional coordinates. Methods for visualizing the local atomic structure, such as atom probe tomography (APT), which routinely generate datasets comprised of millions of atoms, are an important step in realizing this goal. However, state-of-the-art APT instruments generate noisy and sparse datasets that provide information about elemental type, but obscure atomic structures, thus limiting their subsequent value for materials discovery. The application of a materials fingerprinting process, a machine learning algorithm coupled with topological data analysis, provides an avenue by which here-to-fore unprecedented structural information can be extracted from an APT dataset. As a proof of concept, the material fingerprint is applied to high-entropy alloy APT datasets containing body-centered cubic (BCC) and face-centered cubic (FCC) crystal structures. A local atomic configuration centered on an arbitrary atom is assigned a topological descriptor, with which it can be characterized as a BCC or FCC lattice with near perfect accuracy, despite the inherent noise in the dataset. Finally, this successful identification of a fingerprint is a crucial first step in the development of algorithms which can extract more nuanced information, such as chemical ordering, from existing datasets of complex materials.
Position-Specific Carbon Isotope Fingerprinting of Fluorinated Organics and Degradation Products
Fluorinated organic compounds are of growing environmental and forensic relevance due to their widespread use in pharmaceuticals, agrochemicals, and consumer products, their environmental persistence, and potential ecological and human health impacts. Elucidating their sources and transformation pathways is therefore a major focus of current research. Stable carbon isotope analysis provides a powerful approach for tracing molecular origins and linking parent compounds to degradation products. Recent isotope measurements have largely relied on mass-spectrometry techniques, which provide only an average isotope ratio across a compound. In this work, we employ a novel nuclear magnetic resonance (NMR) spectroscopy tool to determine position-specific carbon isotope ratios ( 13 C/ 12 C) in organofluorine compounds and their degradation products. This approach enables isotope measurements without combustion or extensive purification and, crucially, resolves ratios at individual carbon positions rather than bulk averages. The resulting intramolecular isotope fingerprints are unique to a molecule’s source. Applied to selected pharmaceuticals and pesticides, these fingerprints allow discrimination of chemically identical compounds. Moreover, we show that the 13 C/ 12 C signature at the fluorinated carbon persists through degradation, demonstrated for lansoprazole and fipronil. The 19 F NMR data produced for the 13 C/ 12 C analyses are also well suited for impurity profiling, providing an additional dimension for fingerprinting fluorinated organics. These findings suggest that position-specific isotope analysis can serve as part of a broader suite of tools for source characterization of organofluorine compounds and their breakdown derivatives, with potential applications in product validation, forensics, and linking these compounds to their breakdown products.
Microsecond fingerprint stimulated Raman spectroscopic imaging by ultrafast tuning and spatial-spectral learning
Label-free vibrational imaging by stimulated Raman scattering (SRS) provides unprecedented insight into real-time chemical distributions. Specifically, SRS in the fingerprint region (400–1800 cm -1 ) can resolve multiple chemicals in a complex bio-environment. However, due to the intrinsic weak Raman cross-sections and the lack of ultrafast spectral acquisition schemes with high spectral fidelity, SRS in the fingerprint region is not viable for studying living cells or large-scale tissue samples. Here, we report a fingerprint spectroscopic SRS platform that acquires a distortion-free SRS spectrum at 10 cm -1 spectral resolution within 20 µs using a polygon scanner. Meanwhile, we significantly improve the signal-to-noise ratio by employing a spatial-spectral residual learning network, reaching a level comparable to that with 100 times integration. Collectively, our system enables high-speed vibrational spectroscopic imaging of multiple biomolecules in samples ranging from a single live microbe to a tissue slice.
Likely accelerated weakening of Atlantic overturning circulation emerges in optimal salinity fingerprint
The long-term response of the Atlantic meridional overturning circulation (AMOC) to anthropogenic forcing has been difficult to detect from the short direct measurements available due to strong interdecadal variability. Here, we present observational and modeling evidence for a likely accelerated weakening of the AMOC since the 1980s under the combined forcing of anthropogenic greenhouse gases and aerosols. This likely accelerated AMOC weakening signal can be detected in the AMOC fingerprint of salinity pileup remotely in the South Atlantic, but not in the classic warming hole fingerprint locally in the North Atlantic, because the latter is contaminated by the “noise” of interdecadal variability. Our optimal salinity fingerprint retains much of the signal of the long-term AMOC trend response to anthropogenic forcing, while dynamically filtering out shorter climate variability. Given the ongoing anthropogenic forcing, our study indicates a potential further acceleration of AMOC weakening with associated climate impacts in the coming decades.
Genomic fingerprints of the world’s soil ecosystems
Despite the explosion of soil metagenomic data, we lack a synthesized understanding of patterns in the distribution and functions of soil microorganisms. These patterns are critical to predictions of soil microbiome responses to climate change and resulting feedbacks that regulate greenhouse gas release from soils. To address this gap, we assay 1,512 manually curated soil metagenomes using complementary annotation databases, read-based taxonomy, and machine learning to extract multidimensional genomic fingerprints of global soil microbiomes. Our objective is to uncover novel biogeographical patterns of soil microbiomes across environmental factors and ecological biomes with high molecular resolution. We reveal shifts in the potential for (i) microbial nutrient acquisition across pH gradients; (ii) stress-, transport-, and redox-based processes across changes in soil bulk density; and (iii) greenhouse gas emissions across biomes. We also use an unsupervised approach to reveal a collection of soils with distinct genomic signatures, characterized by coordinated changes in soil organic carbon, nitrogen, and cation exchange capacity and in bulk density and clay content that may ultimately reflect soil environments with high microbial activity. Genomic fingerprints for these soils highlight the importance of resource scavenging, plant-microbe interactions, fungi, and heterotrophic metabolisms. Across all analyses, we observed phylogenetic coherence in soil microbiomes—more closely related microorganisms tended to move congruently in response to soil factors. Collectively, the genomic fingerprints uncovered here present a basis for global patterns in the microbial mechanisms underlying soil biogeochemistry and help beget tractable microbial reaction networks for incorporation into process-based models of soil carbon and nutrient cycling.
Frequency Emitter Geolocation Using Signal Strength Fingerprinting Informed By 3D Propagation Modeling
This work focuses on the problem of RF geolocation in complex multipath environments. Using 3D electromagnetic propagation modeling to characterize environments of interest will enable more accurate RF geolocation. Specifically, a path-loss radio map can be generated in simulation for use in received signal strength indicators (RSSI) fingerprinting, or pattern matching. RSSI fingerprinting is an example of data-based method that takes site specific information into account which should allow for better performance than other model-based methods that use a generalized model of electromagnetic propagation. This modeling capability will also be used to evaluate the relative performance of RSSI fingerprinting, pathloss model based RSSI methods such as differential received signal strength circles (DRSS), RSSI joint gaussian estimation, and time-difference of arrival (TDOA). New methods using this simulation derived electromagnetic characterization could improve the efficacy of currently deployed and future RF spectral monitoring solutions. Wireless InSite developed by Remcom is used as the simulation tool of choice in this work. An indoor location is simulated with a grid of fixed receivers and a grid of transmit locations. Using the output of the Wireless InSite simulation the response from a given transmit location to a given receive location can be generated. During the first year of the project various geolocation methods evaluated on purely synthetic, but realistic, data. The second year focused on testing and validating the efficacy of simulation informed RF geolocation using two physical testbeds. This work has shown that data-based approaches are more accurate than model-based ones at the expensive of requiring measured or simulated site-specific training data.
Dual-Polarization Radar Fingerprints of Precipitation Physics: A Review
This article reviews how precipitation microphysics processes are observed in dual-polarization radar observations. These so-called “fingerprints” of precipitation processes are observed as vertical gradients in radar observables. Fingerprints of rain processes are first reviewed, followed by processes involving snow and ice. Then, emerging research is introduced, which includes more quantitative analysis of these dual-polarization radar fingerprints to obtain microphysics model parameters and microphysical process rates. New results based on a detailed rain shaft bin microphysical model are presented, and we conclude with an outlook of potentially fruitful future research directions.