Building Minimalist Models for Functionalized Metal Nanoparticles
In our opinion, the presented strategy includes all the crucial elements of an optimal low resolution model: the choice of the minimal possible resolution, compatibility between different levels of resolution, a parameterization including the specific coating present on the NP by means of superficial higher resolution interacting sites. The effective charges could be further optimized by directly adopting a RESP procedure for their fitting. This task and the model validation at different concentrations and ionic strengths vs. the aggregation tendency are currently in due course (Brancolini et al., submitted). The following steps will be the use of the model in combination with proteins models at the same CG level (minimalist), to verify their effective capability of preventing the amyloids aggregation. Furthermore, the strategy here outlined is extensible to larger NPs and different functionalization, which opens the possibility of in silico optimization of the NPs size and chemistry for therapeutic use.